Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0007_(-)_9914_10828
DateTue Jul 23 14:50:03 BST 2019
Unique Job ID61c82ce27ecdc319
SequenceVTAPNEPGAL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:23.126 Y:49.618 Z:30.179
Model (left) based on template c4gx2B_
Top template information
PDB header:transport protein
Chain: B: PDB Molecule:trka domain protein;
PDBTitle: gsuk channel bound to nad
Confidence and coverage
Confidence: 87.4% Coverage: 27%
83 residues ( 27% of your sequence) have been modelled with 87.4% confidence by the single highest scoring template.
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Warning: 69% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4gx2B_
87.4 16
PDB header:transport protein
Chain: B: PDB Molecule:trka domain protein;
PDBTitle: gsuk channel bound to nad
2c6eu6A_
73.9 11
PDB header:membrane protein
Chain: A: PDB Molecule:ammonium transporter;
PDBTitle: sensor amt protein
3c6o7xa_
73.6 14
PDB header:membrane protein
Chain: A: PDB Molecule:vacuolar atp synthase catalytic subunit a;
PDBTitle: saccharomyces cerevisiae v-atpase stv1-v1vo state 3
4c1ciiA_
59.3 16
PDB header:transmembrane protein
Chain: A: PDB Molecule:colicin ia;
PDBTitle: colicin ia
5c5yylC_
53.6 20
PDB header:signaling protein
Chain: C: PDB Molecule:apisimin;
PDBTitle: structure of major royal jelly protein 1 oligomer
6c4gx5D_
53.4 14
PDB header:transport protein
Chain: D: PDB Molecule:trka domain protein;
PDBTitle: gsuk channel
7c5yylD_
51.9 20
PDB header:signaling protein
Chain: D: PDB Molecule:apisimin;
PDBTitle: structure of major royal jelly protein 1 oligomer
8c3aygA_
51.5 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitric oxide reductase;
PDBTitle: crystal structure of nitric oxide reductase complex with hqno
9c5voxb_
48.3 14
PDB header:hydrolase
Chain: B: PDB Molecule:v-type proton atpase subunit b;
PDBTitle: yeast v-atpase in complex with legionella pneumophila effector sidk2 (rotational state 1)
10c6mizC_
42.4 12
PDB header:membrane protein
Chain: C: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: human trpm2 ion channel in an adpr-bound state
11c6fkip_
41.0 17
PDB header:membrane protein
Chain: P: PDB Molecule:atp synthase subunit c, chloroplastic;
PDBTitle: chloroplast f1fo conformation 3
12c5ws4A_
40.7 18
PDB header:membrane protein
Chain: A: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: crystal structure of tripartite-type abc transporter macb from2 acinetobacter baumannii
13c5vkqC_
38.7 18
PDB header:membrane protein
Chain: C: PDB Molecule:no mechanoreceptor potential c isoform l;
PDBTitle: structure of a mechanotransduction ion channel drosophila nompc in2 nanodisc
14c6o7ua_
37.2 10
PDB header:membrane protein
Chain: A: PDB Molecule:
PDBTitle: saccharomyces cerevisiae v-atpase stv1-vo
15c6iu3A_
35.9 14
PDB header:metal transport
Chain: A: PDB Molecule:vit1;
PDBTitle: crystal structure of iron transporter vit1 with zinc ions
16c6d79A_
35.6 23
PDB header:transport protein
Chain: A: PDB Molecule:sulfate transporter cysz;
PDBTitle: structure of cysz, a sulfate permease from pseudomonas fragi
17c4j7cK_
35.1 14
PDB header:transport protein
Chain: K: PDB Molecule:ktr system potassium uptake protein b;
PDBTitle: ktrab potassium transporter from bacillus subtilis
18c4mndA_
33.8 9
PDB header:transferase
Chain: A: PDB Molecule:ctp l-myo-inositol-1-phosphate cytidylyltransferase/cdp-l-
PDBTitle: crystal structure of archaeoglobus fulgidus ipct-dipps bifunctional2 membrane protein
19c5tj5A_
33.0 16
PDB header:motor protein
Chain: A: PDB Molecule:v-type proton atpase subunit a;
PDBTitle: atomic model for the membrane-embedded motor of a eukaryotic v-atpase
20d3bnea1
33.0 24
Fold:Lipoxigenase
Superfamily:Lipoxigenase
Family:Plant lipoxigenases
21c3e8gB_
not modelled 32.9 16
PDB header:membrane protein
Chain: B: PDB Molecule:potassium channel protein;
PDBTitle: crystal structure of the the open nak channel-na+/ca2+ complex
22c3rlbB_
not modelled 32.6 20
PDB header:thiamine-binding protein
Chain: B: PDB Molecule:thit;
PDBTitle: crystal structure at 2.0 a of the s-component for thiamin from an ecf-2 type abc transporter
23c3b9yA_
not modelled 31.9 23
PDB header:transport protein
Chain: A: PDB Molecule:ammonium transporter family rh-like protein;
PDBTitle: crystal structure of the nitrosomonas europaea rh protein
24c5tfpA_
not modelled 31.4 16
PDB header:transferase
Chain: A: PDB Molecule:histone-lysine n-methyltransferase setdb2;
PDBTitle: crystal structure of the setdb2 amino terminal domain
25c5t4oJ_
not modelled 31.4 17
PDB header:hydrolase
Chain: J: PDB Molecule:atp synthase subunit b;
PDBTitle: autoinhibited e. coli atp synthase state 1
26c2voyG_
not modelled 31.2 33
PDB header:hydrolase
Chain: G: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium atpase 1;
PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus
27c5aezA_
not modelled 31.1 10
PDB header:membrane protein
Chain: A: PDB Molecule:mep2;
PDBTitle: crystal structure of candida albicans mep2
28c2qksA_
not modelled 31.0 16
PDB header:metal transport
Chain: A: PDB Molecule:kir3.1-prokaryotic kir channel chimera;
PDBTitle: crystal structure of a kir3.1-prokaryotic kir channel chimera
29c3pjzA_
not modelled 30.7 16
PDB header:transport protein
Chain: A: PDB Molecule:potassium uptake protein trkh;
PDBTitle: crystal structure of the potassium transporter trkh from vibrio2 parahaemolyticus
30c4o6mA_
not modelled 29.3 15
PDB header:transferase
Chain: A: PDB Molecule:af2299, a cdp-alcohol phosphotransferase;
PDBTitle: structure of af2299, a cdp-alcohol phosphotransferase (cmp-bound)
31c1iijA_
not modelled 29.3 26
PDB header:signaling protein
Chain: A: PDB Molecule:erbb-2 receptor protein-tyrosine kinase;
PDBTitle: solution structure of the neu/erbb-2 membrane spanning2 segment
32c2b2hA_
not modelled 28.7 14
PDB header:transport protein
Chain: A: PDB Molecule:ammonium transporter;
PDBTitle: ammonium transporter amt-1 from a. fulgidus (as)
33c3s0xB_
not modelled 28.1 12
PDB header:hydrolase
Chain: B: PDB Molecule:peptidase a24b, flak domain protein;
PDBTitle: the crystal structure of gxgd membrane protease flak
34c5d92B_
not modelled 28.0 15
PDB header:membrane protein
Chain: B: PDB Molecule:af2299 protein,phosphatidylinositol synthase;
PDBTitle: structure of a phosphatidylinositolphosphate (pip) synthase from2 renibacterium salmoninarum
35c3j1zP_
not modelled 27.6 18
PDB header:metal transport
Chain: P: PDB Molecule:cation efflux family protein;
PDBTitle: inward-facing conformation of the zinc transporter yiip revealed by2 cryo-electron microscopy
36c3hd7A_
not modelled 27.1 16
PDB header:exocytosis
Chain: A: PDB Molecule:vesicle-associated membrane protein 2;
PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1
37d1r11a3
not modelled 26.7 20
Fold:MutS N-terminal domain-like
Superfamily:tRNA-intron endonuclease N-terminal domain-like
Family:tRNA-intron endonuclease N-terminal domain-like
38d1r3jc_
not modelled 25.9 16
Fold:Voltage-gated potassium channels
Superfamily:Voltage-gated potassium channels
Family:Voltage-gated potassium channels
39c3vvpA_
not modelled 25.5 12
PDB header:transport protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of mate in complex with br-nrf
40c6n52B_
not modelled 24.9 11
PDB header:membrane protein
Chain: B: PDB Molecule:metabotropic glutamate receptor 5;
PDBTitle: metabotropic glutamate receptor 5 apo form
41d1rrha1
not modelled 24.3 24
Fold:Lipoxigenase
Superfamily:Lipoxigenase
Family:Plant lipoxigenases
42c5uowB_
not modelled 24.2 18
PDB header:membrane protein
Chain: B: PDB Molecule:n-methyl-d-aspartate receptor subunit nr2a;
PDBTitle: triheteromeric nmda receptor glun1/glun2a/glun2b in complex with2 glycine, glutamate, mk-801 and a glun2b-specific fab, at ph 6.5
43c3pjzB_
not modelled 24.2 16
PDB header:transport protein
Chain: B: PDB Molecule:potassium uptake protein trkh;
PDBTitle: crystal structure of the potassium transporter trkh from vibrio2 parahaemolyticus
44c1no3A_
not modelled 24.1 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:lipoxygenase-3;
PDBTitle: refined structure of soybean lipoxygenase-3 with 4-nitrocatechol at2 2.15 angstrom resolution
45c4dveA_
not modelled 23.3 14
PDB header:transport protein
Chain: A: PDB Molecule:biotin transporter bioy;
PDBTitle: crystal structure at 2.1 a of the s-component for biotin from an ecf-2 type abc transporter
46c5nikK_
not modelled 23.2 16
PDB header:transport protein
Chain: K: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: structure of the macab-tolc abc-type tripartite multidrug efflux pump
47c5lj7B_
not modelled 22.9 15
PDB header:transport protein
Chain: B: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: structure of aggregatibacter actinomycetemcomitans macb bound to atp2 (p21)
48c2vv5D_
not modelled 21.1 13
PDB header:membrane protein
Chain: D: PDB Molecule:small-conductance mechanosensitive channel;
PDBTitle: the open structure of mscs
49c6n3qB_
not modelled 20.9 25
PDB header:transport protein
Chain: B: PDB Molecule:protein transport protein sbh1;
PDBTitle: cryo-em structure of the yeast sec complex
50d2a9ha1
not modelled 20.5 13
Fold:Voltage-gated potassium channels
Superfamily:Voltage-gated potassium channels
Family:Voltage-gated potassium channels
51c6r7tB_
not modelled 19.9 17
PDB header:immune system
Chain: B: PDB Molecule:melanoma-associated antigen b1;
PDBTitle: crystal structure of human melanoma-associated antigen b1 (mageb1) in2 complex with nanobody
52c2yvxD_
not modelled 18.6 12
PDB header:transport protein
Chain: D: PDB Molecule:mg2+ transporter mgte;
PDBTitle: crystal structure of magnesium transporter mgte
53c3jycA_
not modelled 17.6 14
PDB header:metal transport
Chain: A: PDB Molecule:inward-rectifier k+ channel kir2.2;
PDBTitle: crystal structure of the eukaryotic strong inward-rectifier2 k+ channel kir2.2 at 3.1 angstrom resolution
54c2nuuF_
not modelled 17.2 19
PDB header:transport protein/signaling protein
Chain: F: PDB Molecule:ammonia channel;
PDBTitle: regulating the escherichia coli ammonia channel: the crystal structure2 of the amtb-glnk complex
55c5meeB_
not modelled 16.7 29
PDB header:oxidoreductase
Chain: B: PDB Molecule:arachidonate 15-lipoxygenase;
PDBTitle: cyanothece lipoxygenase 2 (csplox2) variant - l304v
56d2axtz1
not modelled 16.1 22
Fold:Transmembrane helix hairpin
Superfamily:PsbZ-like
Family:PsbZ-like
57c3rfuC_
not modelled 15.5 13
PDB header:hydrolase, membrane protein
Chain: C: PDB Molecule:copper efflux atpase;
PDBTitle: crystal structure of a copper-transporting pib-type atpase
58d1rzhh2
not modelled 15.4 25
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction centre subunit H, transmembrane region
Family:Photosystem II reaction centre subunit H, transmembrane region
59c3hd6A_
not modelled 14.4 14
PDB header:membrane protein, transport protein
Chain: A: PDB Molecule:ammonium transporter rh type c;
PDBTitle: crystal structure of the human rhesus glycoprotein rhcg
60d1l9bh2
not modelled 14.2 25
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction centre subunit H, transmembrane region
Family:Photosystem II reaction centre subunit H, transmembrane region
61c2h3oA_
not modelled 14.0 31
PDB header:membrane protein
Chain: A: PDB Molecule:merf;
PDBTitle: structure of merft, a membrane protein with two trans-2 membrane helices
62c4hg6B_
not modelled 13.8 24
PDB header:transferase
Chain: B: PDB Molecule:cellulose synthase subunit b;
PDBTitle: structure of a cellulose synthase - cellulose translocation2 intermediate
63c4gn0D_
not modelled 13.6 13
PDB header:signaling protein
Chain: D: PDB Molecule:hamp domain of af1503;
PDBTitle: de novo phasing of a hamp-complex using an improved arcimboldo method
64c2n28A_
not modelled 13.6 10
PDB header:viral protein
Chain: A: PDB Molecule:protein vpu;
PDBTitle: solid-state nmr structure of vpu
65c4tqvJ_
not modelled 13.5 17
PDB header:transport protein
Chain: J: PDB Molecule:algm2;
PDBTitle: crystal structure of a bacterial abc transporter involved in the2 import of the acidic polysaccharide alginate
66c5aexB_
not modelled 12.9 12
PDB header:membrane protein
Chain: B: PDB Molecule:ammonium transporter mep2;
PDBTitle: crystal structure of saccharomyces cerevisiae mep2
67c2ks1A_
not modelled 12.9 8
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
68c2jwaA_
not modelled 12.9 8
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: erbb2 transmembrane segment dimer spatial structure
69c1zzaA_
not modelled 12.9 29
PDB header:membrane protein
Chain: A: PDB Molecule:stannin;
PDBTitle: solution nmr structure of the membrane protein stannin
70c3vouB_
not modelled 12.7 15
PDB header:transport protein
Chain: B: PDB Molecule:ion transport 2 domain protein, voltage-gated sodium
PDBTitle: the crystal structure of nak-navsulp chimera channel
71c2k9yA_
not modelled 12.2 41
PDB header:transferase
Chain: A: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
72c2k9yB_
not modelled 12.2 41
PDB header:transferase
Chain: B: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
73c4zwjC_
not modelled 12.1 14
PDB header:signaling protein
Chain: C: PDB Molecule:chimera protein of human rhodopsin, mouse s-arrestin, and
PDBTitle: crystal structure of rhodopsin bound to arrestin by femtosecond x-ray2 laser
74c6a69B_
not modelled 11.7 14
PDB header:structural protein
Chain: B: PDB Molecule:neuroplastin;
PDBTitle: cryo-em structure of a p-type atpase
75c2rmzA_
not modelled 11.5 17
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin beta-3;
PDBTitle: bicelle-embedded integrin beta3 transmembrane segment
76c3rfrK_
not modelled 11.5 19
PDB header:oxidoreductase
Chain: K: PDB Molecule:pmoc;
PDBTitle: crystal structure of particulate methane monooxygenase (pmmo) from2 methylocystis sp. strain m
77c2m67A_
not modelled 11.4 31
PDB header:transport protein
Chain: A: PDB Molecule:merf;
PDBTitle: full-length mercury transporter protein merf in lipid bilayer2 membranes
78c3k07A_
not modelled 11.4 21
PDB header:transport protein
Chain: A: PDB Molecule:cation efflux system protein cusa;
PDBTitle: crystal structure of cusa
79c2onkC_
not modelled 11.2 10
PDB header:membrane protein
Chain: C: PDB Molecule:molybdate/tungstate abc transporter, permease
PDBTitle: abc transporter modbc in complex with its binding protein2 moda
80d2onkc1
not modelled 11.2 10
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
81c5awwG_
not modelled 11.2 26
PDB header:protein transport/immune system
Chain: G: PDB Molecule:putative preprotein translocase, secg subunit;
PDBTitle: precise resting state of thermus thermophilus secyeg
82c3rlbA_
not modelled 10.9 20
PDB header:thiamine-binding protein
Chain: A: PDB Molecule:thit;
PDBTitle: crystal structure at 2.0 a of the s-component for thiamin from an ecf-2 type abc transporter
83c2kogA_
not modelled 10.7 23
PDB header:membrane protein
Chain: A: PDB Molecule:vesicle-associated membrane protein 2;
PDBTitle: lipid-bound synaptobrevin solution nmr structure
84c1lnqC_
not modelled 10.6 12
PDB header:metal transport
Chain: C: PDB Molecule:potassium channel related protein;
PDBTitle: crystal structure of mthk at 3.3 a
85c5aexJ_
not modelled 10.5 19
PDB header:membrane protein
Chain: J: PDB Molecule:ammonium transporter mep2;
PDBTitle: crystal structure of saccharomyces cerevisiae mep2
86c2wa0A_
not modelled 10.3 32
PDB header:immune system
Chain: A: PDB Molecule:melanoma-associated antigen 4;
PDBTitle: crystal structure of the human magea4
87c1lj2B_
not modelled 9.6 26
PDB header:viral protein/ translation
Chain: B: PDB Molecule:nonstructural rna-binding protein 34;
PDBTitle: recognition of eif4g by rotavirus nsp3 reveals a basis for2 mrna circularization
88c4f35C_
not modelled 9.4 17
PDB header:transport protein
Chain: C: PDB Molecule:transporter, nadc family;
PDBTitle: crystal structure of a bacterial dicarboxylate/sodium symporter
89c4h33A_
not modelled 9.4 12
PDB header:membrane protein
Chain: A: PDB Molecule:lmo2059 protein;
PDBTitle: crystal structure of a voltage-gated k+ channel pore module in a2 closed state in lipid membranes, tetragonal crystal form
90d1f6ga_
not modelled 9.1 9
Fold:Voltage-gated potassium channels
Superfamily:Voltage-gated potassium channels
Family:Voltage-gated potassium channels
91c2m59A_
not modelled 9.1 20
PDB header:transferase
Chain: A: PDB Molecule:vascular endothelial growth factor receptor 2;
PDBTitle: spatial structure of dimeric vegfr2 membrane domain in dpc micelles
92c2m59B_
not modelled 9.1 20
PDB header:transferase
Chain: B: PDB Molecule:vascular endothelial growth factor receptor 2;
PDBTitle: spatial structure of dimeric vegfr2 membrane domain in dpc micelles
93c5zovA_
not modelled 8.9 13
PDB header:transport protein
Chain: A: PDB Molecule:pts ascorbate-specific subunit iibc;
PDBTitle: inward-facing conformation of l-ascorbate transporter ulaa
94c4zwjA_
not modelled 8.9 14
PDB header:signaling protein
Chain: A: PDB Molecule:chimera protein of human rhodopsin, mouse s-arrestin, and
PDBTitle: crystal structure of rhodopsin bound to arrestin by femtosecond x-ray2 laser
95c3ifxB_
not modelled 8.9 12
PDB header:membrane protein
Chain: B: PDB Molecule:voltage-gated potassium channel;
PDBTitle: crystal structure of the spin-labeled kcsa mutant v48r1
96c6d73B_
not modelled 8.8 15
PDB header:transport protein
Chain: B: PDB Molecule:transient receptor potential cation channel, subfamily m;
PDBTitle: cryo-em structure of the zebrafish trpm2 channel in the presence of2 ca2+m2
97c4witB_
not modelled 8.8 18
PDB header:lipid transport
Chain: B: PDB Molecule:predicted protein;
PDBTitle: tmem16 lipid scramblase in crystal form 2
98c5v96A_
not modelled 8.8 24
PDB header:hydrolase
Chain: A: PDB Molecule:s-adenosyl-l-homocysteine hydrolase;
PDBTitle: crystal structure of s-adenosyl-l-homocysteine hydrolase from2 naegleria fowleri with bound nad and adenosine
99c2kixD_
not modelled 8.8 40
PDB header:transport protein
Chain: D: PDB Molecule:bm2 protein;
PDBTitle: channel domain of bm2 protein from influenza b virus

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below