Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0010c_(-)_13133_13558
DateTue Jul 23 14:50:03 BST 2019
Unique Job ID649c6cbdcdeca1a9
SequenceMQQTAWAPRT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:27.105 Y:12.399 Z:17.598
Model (left) based on template d1mpga2
Top template information
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:DNA repair glycosylase, N-terminal domain
Confidence and coverage
Confidence: 60.5% Coverage: 13%
18 residues ( 13% of your sequence) have been modelled with 60.5% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1mpga2



60.5 39
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:DNA repair glycosylase, N-terminal domain
2d1gg3a2



44.1 19
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Third domain of FERM
3c3tu3A_



37.6 22
PDB header:toxin/toxin chaperone
Chain: A: PDB Molecule:exou chaperone;
PDBTitle: 1.92 angstrom resolution crystal structure of the full-length spcu in2 complex with full-length exou from the type iii secretion system of3 pseudomonas aeruginosa
4d1e5wa2



37.2 30
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Third domain of FERM
5c4akxA_



34.6 22
PDB header:transport protein
Chain: A: PDB Molecule:spcu;
PDBTitle: structure of the heterodimeric complex exou-spcu from the type iii2 secretion system (t3ss) of pseudomonas aeruginosa
6d1isna2



31.9 26
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Third domain of FERM
7d1j19a2



27.8 26
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Third domain of FERM
8d1ef1a2



24.9 26
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Third domain of FERM
9d1ef4a_



24.5 50
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:RNA polymerase subunit RPB10
Family:RNA polymerase subunit RPB10
10c2mc5A_



21.6 38
PDB header:protein binding
Chain: A: PDB Molecule:45l;
PDBTitle: a bacteriophage transcription regulator inhibits bacterial2 transcription initiation by -factor displacement
11d1ywya1



18.6 26
Fold:PH domain-like barrel
Superfamily:PA2021-like
Family:PA2021-like
12c4qiwV_



18.3 50
PDB header:transcription
Chain: V: PDB Molecule:dna-directed rna polymerase subunit n;
PDBTitle: crystal structure of euryarchaeal rna polymerase from thermococcus2 kodakarensis
13d2zpya2



17.0 15
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Third domain of FERM
14c1e5wA_



16.7 26
PDB header:membrane protein
Chain: A: PDB Molecule:moesin;
PDBTitle: structure of isolated ferm domain and first long helix of moesin
15c2pmzN_



13.0 44
PDB header:translation, transferase
Chain: N: PDB Molecule:dna-directed rna polymerase subunit n;
PDBTitle: archaeal rna polymerase from sulfolobus solfataricus
16c4g6tA_



12.7 15
PDB header:chaperone
Chain: A: PDB Molecule:type iii chaperone protein shca;
PDBTitle: structure of the hopa1-scha chaperone-effector complex
17d1qupa2



10.7 15
Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
18c6d2kA_



9.8 18
PDB header:signaling protein
Chain: A: PDB Molecule:ferm, arhgef and pleckstrin domain-containing protein 2;
PDBTitle: crystal structure of the ferm domain of mouse farp2
19c2i1kA_



9.6 22
PDB header:cell adhesion, membrane protein
Chain: A: PDB Molecule:moesin;
PDBTitle: moesin from spodoptera frugiperda reveals the coiled-coil domain at2 3.0 angstrom resolution
20c4rm9A_



9.0 22
PDB header:peptide binding protein
Chain: A: PDB Molecule:ezrin;
PDBTitle: crystal structure of human ezrin in space group c2221
21d1mxaa3



not modelled 8.7 13
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
22c2i88A_



not modelled 8.4 16
PDB header:membrane protein
Chain: A: PDB Molecule:colicin-e1;
PDBTitle: crystal structure of the channel-forming domain of colicin e1
23d2p02a3



not modelled 8.1 19
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
24d2jxta1



not modelled 7.3 26
Fold:RplX-like
Superfamily:RplX-like
Family:RplX-like
25d1fe0a_



not modelled 7.2 21
Fold:Ferredoxin-like
Superfamily:HMA, heavy metal-associated domain
Family:HMA, heavy metal-associated domain
26d1twfj_



not modelled 7.2 25
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:RNA polymerase subunit RPB10
Family:RNA polymerase subunit RPB10
27d2pb9a1



not modelled 7.2 33
Fold:AraD/HMP-PK domain-like
Superfamily:AraD/HMP-PK domain-like
Family:Phosphomethylpyrimidine kinase C-terminal domain-like
28d1ib8a1



not modelled 6.9 24
Fold:Sm-like fold
Superfamily:YhbC-like, C-terminal domain
Family:YhbC-like, C-terminal domain
29d2phpa1



not modelled 6.8 33
Fold:AraD/HMP-PK domain-like
Superfamily:AraD/HMP-PK domain-like
Family:Phosphomethylpyrimidine kinase C-terminal domain-like
30d1h4ra2



not modelled 6.7 13
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Third domain of FERM
31c2i1jA_



not modelled 6.2 26
PDB header:cell adhesion, membrane protein
Chain: A: PDB Molecule:moesin;
PDBTitle: moesin from spodoptera frugiperda at 2.1 angstroms resolution
32c3j21l_



not modelled 6.0 21
PDB header:ribosome
Chain: L: PDB Molecule:50s ribosomal protein l15p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
33c5lc5F_



not modelled 6.0 33
PDB header:oxidoreductase
Chain: F: PDB Molecule:nadh dehydrogenase [ubiquinone] flavoprotein 1,
PDBTitle: structure of mammalian respiratory complex i, class2
34d1qm4a3



not modelled 5.8 19
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
35c6d2qA_



not modelled 5.7 22
PDB header:signaling protein
Chain: A: PDB Molecule:ferm, rhogef (arhgef) and pleckstrin domain protein 1
PDBTitle: crystal structure of the ferm domain of zebrafish farp1
36d2arza1



not modelled 5.6 17
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
37c1gg3A_



not modelled 5.5 16
PDB header:membrane protein
Chain: A: PDB Molecule:erythroid membrane protein 4.1r;
PDBTitle: crystal structure of the protein 4.1r membrane binding2 domain
38d1ciia1



not modelled 5.5 16
Fold:Toxins' membrane translocation domains
Superfamily:Colicin
Family:Colicin
39d1tz7a1



not modelled 5.4 30
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
40c4a19X_



not modelled 5.4 23
PDB header:ribosome
Chain: X: PDB Molecule:rpl18a;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 26s rrna and3 proteins of molecule 2.
41d1eswa_



not modelled 5.3 35
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
42c1rg9D_



not modelled 5.3 13
PDB header:transferase
Chain: D: PDB Molecule:s-adenosylmethionine synthetase;
PDBTitle: s-adenosylmethionine synthetase complexed with sam and ppnp

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below