Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0011c_(-)_13714_13995
DateTue Jul 23 14:50:03 BST 2019
Unique Job ID5a7909df80ac12c4
SequenceMPKSKVRKKN ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:25.435 Y:20.366 Z:42.321
Model (left) based on template c2mmuA_
Top template information
PDB header:cell cycle
Chain: A: PDB Molecule:cell division protein crga;
PDBTitle: structure of crga, a cell division structural and regulatory protein2 from mycobacterium tuberculosis, in lipid bilayers
Confidence and coverage
Confidence: 99.9% Coverage: 52%
48 residues ( 52% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2mmuA_
99.9 100
PDB header:cell cycle
Chain: A: PDB Molecule:cell division protein crga;
PDBTitle: structure of crga, a cell division structural and regulatory protein2 from mycobacterium tuberculosis, in lipid bilayers
2c3j65n_
53.3 24
PDB header:ribosome
Chain: N: PDB Molecule:60s ribosomal protein l28;
PDBTitle: arx1 pre-60s particle. this entry contains the r-proteins and2 biogenesis factors.
3c3mk7F_
50.3 21
PDB header:oxidoreductase
Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p;
PDBTitle: the structure of cbb3 cytochrome oxidase
4c5z62J_
26.3 20
PDB header:electron transport
Chain: J: PDB Molecule:cytochrome c oxidase subunit 7a2, mitochondrial;
PDBTitle: structure of human cytochrome c oxidase
5d1v54j_
25.3 17
Fold:Single transmembrane helix
Superfamily:Mitochondrial cytochrome c oxidase subunit VIIa
Family:Mitochondrial cytochrome c oxidase subunit VIIa
6c4zyoA_
24.7 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:acyl-coa desaturase;
PDBTitle: crystal structure of human integral membrane stearoyl-coa desaturase2 with substrate
7c4ymkA_
24.4 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:acyl-coa desaturase 1;
PDBTitle: crystal structure of stearoyl-coenzyme a desaturase 1
8c2y69Z_
21.5 23
PDB header:electron transport
Chain: Z: PDB Molecule:cytochrome c oxidase polypeptide 8h;
PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular oxygen
9c2y69W_
21.3 17
PDB header:electron transport
Chain: W: PDB Molecule:cytochrome c oxidase polypeptide 7a1;
PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular oxygen
10c2n7rA_
19.9 27
PDB header:membrane protein
Chain: A: PDB Molecule:nicastrin;
PDBTitle: structure of the transmembrane domain of human nicastrin in dpc2 micelles
11c3jcuj_
16.0 23
PDB header:membrane protein
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
12c5xnmj_
15.8 32
PDB header:membrane protein
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: structure of unstacked c2s2m2-type psii-lhcii supercomplex from pisum2 sativum
13c2momC_
13.8 29
PDB header:membrane protein
Chain: C: PDB Molecule:lysosome-associated membrane glycoprotein 2;
PDBTitle: structural insights of tm domain of lamp-2a in dpc micelles
14c5z62M_
13.6 23
PDB header:electron transport
Chain: M: PDB Molecule:cytochrome c oxidase subunit 8a, mitochondrial;
PDBTitle: structure of human cytochrome c oxidase
15d1jb0f_
12.6 44
Fold:Single transmembrane helix
Superfamily:Subunit III of photosystem I reaction centre, PsaF
Family:Subunit III of photosystem I reaction centre, PsaF
16c2momB_
12.5 29
PDB header:membrane protein
Chain: B: PDB Molecule:lysosome-associated membrane glycoprotein 2;
PDBTitle: structural insights of tm domain of lamp-2a in dpc micelles
17d1v54m_
12.4 23
Fold:Single transmembrane helix
Superfamily:Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)
Family:Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)
18c4kt0F_
11.6 44
PDB header:electron transport
Chain: F: PDB Molecule:photosystem i subunit iii;
PDBTitle: crystal structure of a virus like photosystem i from the2 cyanobacterium synechocystis pcc 6803
19c6igzF_
11.5 19
PDB header:plant protein
Chain: F: PDB Molecule:psaf;
PDBTitle: structure of psi-lhci
20c6fhvA_
10.8 29
PDB header:hydrolase
Chain: A: PDB Molecule:glucoamylase;
PDBTitle: crystal structure of penicillium oxalicum glucoamylase
21c1cn3F_
not modelled 9.5 29
PDB header:viral protein
Chain: F: PDB Molecule:fragment of coat protein vp2;
PDBTitle: interaction of polyomavirus internal protein vp2 with major2 capsid protein vp1 and implications for participation of3 vp2 in viral entry
22c6ijjF_
not modelled 8.9 31
PDB header:membrane protein
Chain: F: PDB Molecule:psaf;
PDBTitle: photosystem i of chlamydomonas reinhardtii
23c3hd7A_
not modelled 8.7 5
PDB header:exocytosis
Chain: A: PDB Molecule:vesicle-associated membrane protein 2;
PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1
24d1rkla_
not modelled 7.6 29
Fold:Single transmembrane helix
Superfamily:Oligosaccharyltransferase subunit ost4p
Family:Oligosaccharyltransferase subunit ost4p
25c1rklA_
not modelled 7.6 29
PDB header:transferase
Chain: A: PDB Molecule:dolichyl-diphosphooligosaccharide--protein
PDBTitle: nmr structure of yeast oligosaccharyltransferase subunit2 ost4p
26d1vema1
not modelled 6.5 50
Fold:Prealbumin-like
Superfamily:Starch-binding domain-like
Family:Starch-binding domain
27c2z0bB_
not modelled 6.2 50
PDB header:hydrolase
Chain: B: PDB Molecule:putative glycerophosphodiester phosphodiesterase 5;
PDBTitle: crystal structure of cbm20 domain of human putative2 glycerophosphodiester phosphodiesterase 5 (kiaa1434)
28c2kogA_
not modelled 6.1 5
PDB header:membrane protein
Chain: A: PDB Molecule:vesicle-associated membrane protein 2;
PDBTitle: lipid-bound synaptobrevin solution nmr structure
29c6fhwB_
not modelled 5.9 38
PDB header:hydrolase
Chain: B: PDB Molecule:glucoamylase p;
PDBTitle: structure of hormoconis resinae glucoamylase
30d1ppjd2
not modelled 5.6 22
Fold:Single transmembrane helix
Superfamily:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
Family:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
31c6btmC_
not modelled 5.6 13
PDB header:membrane protein
Chain: C: PDB Molecule:alternative complex iii subunit c;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
32c2xzn9_
not modelled 5.5 24
PDB header:ribosome
Chain: 9: PDB Molecule:rps31e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
33c2xzm9_
not modelled 5.5 24
PDB header:ribosome
Chain: 9: PDB Molecule:rps31e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
34d1kula_
not modelled 5.5 50
Fold:Prealbumin-like
Superfamily:Starch-binding domain-like
Family:Starch-binding domain
35c2ww9B_
not modelled 5.4 23
PDB header:ribosome
Chain: B: PDB Molecule:protein transport protein sss1;
PDBTitle: cryo-em structure of the active yeast ssh1 complex bound to the yeast2 80s ribosome
36d2axtj1
not modelled 5.4 23
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein J, PsbJ
Family:PsbJ-like
37c3a0hJ_
not modelled 5.4 23
PDB header:electron transport
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: crystal structure of i-substituted photosystem ii complex
38c4y3uB_
not modelled 5.4 40
PDB header:membrane protein
Chain: B: PDB Molecule:cardiac phospholamban;
PDBTitle: the structure of phospholamban bound to the calcium pump serca1a
39d1cxla2
not modelled 5.1 38
Fold:Prealbumin-like
Superfamily:Starch-binding domain-like
Family:Starch-binding domain
40d1cgta2
not modelled 5.0 50
Fold:Prealbumin-like
Superfamily:Starch-binding domain-like
Family:Starch-binding domain

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below