Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0017c_(rodA)_20231_21640
DateTue Jul 23 14:50:04 BST 2019
Unique Job ID11892c3c4a7883ad
SequenceMTTRLQAPVA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:44.751 Y:55.636 Z:61.860
Model (left) based on template c6basA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:peptidoglycan glycosyltransferase roda;
PDBTitle: crystal structure of thermus thermophilus rod shape determining2 protein roda d255a mutant (q5six3_thet8)
Confidence and coverage
Confidence:100.0% Coverage: 63%
297 residues ( 63% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6basA_



100.0 30
PDB header:transferase
Chain: A: PDB Molecule:peptidoglycan glycosyltransferase roda;
PDBTitle: crystal structure of thermus thermophilus rod shape determining2 protein roda d255a mutant (q5six3_thet8)
2c6iedA_



61.9 19
PDB header:membrane protein
Chain: A: PDB Molecule:heme a synthase;
PDBTitle: crystal structure of heme a synthase from bacillus subtilis
3c2jo1A_



47.1 27
PDB header:hydrolase regulator
Chain: A: PDB Molecule:phospholemman;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles
4c4mt1A_



36.7 11
PDB header:membrane protein, tranport protein
Chain: A: PDB Molecule:drug efflux protein;
PDBTitle: crystal structure of the neisseria gonorrhoeae mtrd inner membrane2 multidrug efflux pump
5c6csxA_



35.4 17
PDB header:transport protein
Chain: A: PDB Molecule:multidrug efflux pump subunit acrb;
PDBTitle: single particles cryo-em structure of acrb d407a associated with lipid2 bilayer at 3.0 angstrom
6c6dmoA_



30.7 11
PDB header:protein binding
Chain: A: PDB Molecule:protein patched homolog 1;
PDBTitle: cryo-em structure of human ptch1 with three mutations2 l282q/t500f/p504l
7c6owsB_



30.6 15
PDB header:membrane protein
Chain: B: PDB Molecule:efflux pump membrane transporter;
PDBTitle: cryo-em structure of an acinetobacter baumannii multidrug efflux pump
8c5ejdK_



30.6 20
PDB header:biosynthetic protein
Chain: K: PDB Molecule:tqaa;
PDBTitle: the crystal structure of holo t3ct
9c2kncB_



28.6 26
PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
10c2v50A_



26.9 13
PDB header:membrane protein
Chain: A: PDB Molecule:multidrug resistance protein mexb;
PDBTitle: the missing part of the bacterial mexab-oprm system: structural2 determination of the multidrug exporter mexb
11d2azea1



26.1 20
Fold:E2F-DP heterodimerization region
Superfamily:E2F-DP heterodimerization region
Family:DP dimerization segment
12c4pxhF_



22.1 23
PDB header:oxidoreductase/protein binding
Chain: F: PDB Molecule:peptide synthetase;
PDBTitle: structure of p450sky (cyp163b3), a cytochrome p450 from skyllamycin2 biosynthesis in complex with a peptidyl carrier protein domain
13c2mr7A_



21.4 23
PDB header:biosynthetic protein
Chain: A: PDB Molecule:non-ribosomal peptide synthetase;
PDBTitle: apo structure of the peptidyl carrier protein domain 7 of the2 teicoplanin producing non-ribosomal peptide synthetase
14c6nbxG_



19.0 17
PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-quinone oxidoreductase subunit j;
PDBTitle: t.elongatus ndh (data-set 2)
15c5zk4D_



18.0 17
PDB header:transferase
Chain: D: PDB Molecule:disa protein;
PDBTitle: the structure of dszs acyltransferase with carrier protein
16d2pnga1



17.9 18
Fold:Acyl carrier protein-like
Superfamily:ACP-like
Family:Acyl-carrier protein (ACP)
17d2gdwa1



13.8 26
Fold:Acyl carrier protein-like
Superfamily:ACP-like
Family:Peptidyl carrier domain
18d1iwga8



13.4 11
Fold:Multidrug efflux transporter AcrB transmembrane domain
Superfamily:Multidrug efflux transporter AcrB transmembrane domain
Family:Multidrug efflux transporter AcrB transmembrane domain
19c4i4dA_



13.3 25
PDB header:biosynthetic protein
Chain: A: PDB Molecule:peptide synthetase nrps type ii-pcp;
PDBTitle: structure of blmi, a type-ii acyl-carrier-protein from streptomyces2 verticillus involved in bleomycin biosynthesis
20c2jp3A_



11.5 14
PDB header:transcription
Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4;
PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles
21c5zazA_



not modelled 11.4 21
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin beta-2;
PDBTitle: solution structure of integrin b2 monomer tranmembrane domain in2 bicelle
22c5u3hA_



not modelled 11.3 23
PDB header:ligase
Chain: A: PDB Molecule:hmwp2 nonribosomal peptide synthetase;
PDBTitle: solution structure of apo pcp1 from yersiniabactin synthetase
23d2r6gf1



not modelled 10.6 18
Fold:MalF N-terminal region-like
Superfamily:MalF N-terminal region-like
Family:MalF N-terminal region-like
24c5mtiA_



not modelled 9.9 27
PDB header:transport protein
Chain: A: PDB Molecule:phosphopantetheine-binding protein;
PDBTitle: bamb_5917 acyl-carrier protein
25c2rmzA_



not modelled 8.9 21
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin beta-3;
PDBTitle: bicelle-embedded integrin beta3 transmembrane segment
26c4pa5A_



not modelled 8.9 22
PDB header:transferase
Chain: A: PDB Molecule:protein-glutamine gamma-glutamyltransferase;
PDBTitle: tgl - a bacterial spore coat transglutaminase - cystamine complex
27c5msvB_



not modelled 8.5 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:thioester reductase domain-containing protein;
PDBTitle: structure of the phosphopantetheine modified pcp-r didomain of2 carboxylic acid reductase (car) in complex with nadp
28c2mkvA_



not modelled 8.1 16
PDB header:transport protein
Chain: A: PDB Molecule:sodium/potassium-transporting atpase subunit gamma;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd2b in micelles
29c5zgbI_



not modelled 6.3 46
PDB header:photosynthesis
Chain: I: PDB Molecule:psai;
PDBTitle: cryo-em structure of the red algal psi-lhcr
30c5zghI_



not modelled 6.3 46
PDB header:photosynthesis
Chain: I: PDB Molecule:psai;
PDBTitle: cryo-em structure of the red algal psi-lhcr
31c4v19U_



not modelled 6.1 13
PDB header:ribosome
Chain: U: PDB Molecule:mitoribosomal protein bl20m, mrpl20;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
32d1wuua2



not modelled 6.0 19
Fold:Ferredoxin-like
Superfamily:GHMP Kinase, C-terminal domain
Family:Galactokinase
33c2cq8A_



not modelled 5.7 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:10-formyltetrahydrofolate dehydrogenase;
PDBTitle: solution structure of rsgi ruh-033, a pp-binding domain of2 10-fthfdh from human cdna
34c6fosI_



not modelled 5.3 46
PDB header:photosynthesis
Chain: I: PDB Molecule:photosystem i reaction center subunit viii;
PDBTitle: cyanidioschyzon merolae photosystem i
35d1q90g_



not modelled 5.2 50
Fold:Single transmembrane helix
Superfamily:PetG subunit of the cytochrome b6f complex
Family:PetG subunit of the cytochrome b6f complex
36c1q90G_



not modelled 5.2 50
PDB header:photosynthesis
Chain: G: PDB Molecule:cytochrome b6f complex subunit petg;
PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below