Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0022c_(whiB5)_27023_27442
DateTue Jul 23 14:50:05 BST 2019
Unique Job ID9ff7ded6047cfecc
SequenceMAHPCATDPE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:35.496 Y:30.633 Z:44.907
Model (left) based on template c5oayA_
Top template information
PDB header:signaling protein
Chain: A: PDB Molecule:transcriptional regulator whib1;
PDBTitle: m. tuberculosis [4fe-4s] protein whib1 is a four-helix bundle that2 forms a no-sensitive complex with sigmaa and regulates the major3 virulence factor esx-1
Confidence and coverage
Confidence: 98.0% Coverage: 37%
52 residues ( 37% of your sequence) have been modelled with 98.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5oayA_



98.0 35
PDB header:signaling protein
Chain: A: PDB Molecule:transcriptional regulator whib1;
PDBTitle: m. tuberculosis [4fe-4s] protein whib1 is a four-helix bundle that2 forms a no-sensitive complex with sigmaa and regulates the major3 virulence factor esx-1
2c2k1oA_



50.8 64
PDB header:gene regulation
Chain: A: PDB Molecule:putative;
PDBTitle: nmr structure of helicobacter pylori jhp0511 (hp0564).
3c2l6tA_



26.7 53
PDB header:antiviral protein
Chain: A: PDB Molecule:vir-576;
PDBTitle: efficacy of an hiv-1 entry inhibitor targeting the gp41 fusion peptide
4c2l6sA_



26.7 53
PDB header:antiviral protein
Chain: A: PDB Molecule:vir-576;
PDBTitle: efficacy of an hiv-1 entry inhibitor targeting the gp41 fusion peptide
5c2jsjA_



15.4 78
PDB header:hormone
Chain: A: PDB Molecule:appetite-regulating hormone, obestatin;
PDBTitle: obestatin in water solution
6c5dmpA_



12.1 41
PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: structure of the archaeal nhej phosphoesterase from methanocella2 paludicola.
7c1ei0A_



11.6 47
PDB header:cell cycle
Chain: A: PDB Molecule:p8mtcp1;
PDBTitle: nmr structure of the alpha-helical hairpin of p8mtcp1
8d1aopa2



11.6 14
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:Duplicated SiR/NiR-like domains 1 and 3
9c6ba3A_



11.3 60
PDB header:toxin
Chain: A: PDB Molecule:u21-hexatoxin-hi1a;
PDBTitle: nmr structure of u21-hexatoxin-hi1a toxin from australian funnel-web2 spider hadronyche infensa
10d1gpqa_



11.3 26
Fold:Inhibitor of vertebrate lysozyme, Ivy
Superfamily:Inhibitor of vertebrate lysozyme, Ivy
Family:Inhibitor of vertebrate lysozyme, Ivy
11c2jshA_



10.6 78
PDB header:hormone
Chain: A: PDB Molecule:appetite-regulating hormone, obestatin;
PDBTitle: obestatin nmr structure in sds/dpc micellar solution
12d1zj8a1



10.5 23
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:Duplicated SiR/NiR-like domains 1 and 3
13c4ce0A_



10.3 25
PDB header:transferase
Chain: A: PDB Molecule:o-methyltransferase;
PDBTitle: crystal structure of sah-bound spinosyn rhamnosyl 4'-o-2 methyltransferase spnh from saccharopolyspora spinosa
14c3b0nA_



9.8 34
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitrite reductase;
PDBTitle: q448k mutant of assimilatory nitrite reductase (nii3) from tobbaco2 leaf
15c6c4vA_



9.3 29
PDB header:transport protein
Chain: A: PDB Molecule:polyketide synthase pks13;
PDBTitle: 1.9 angstrom resolution crystal structure of acyl carrier protein2 domain (residues 1350-1461) of polyketide synthase pks13 from3 mycobacterium tuberculosis
16c3p4hA_



9.0 35
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent dna ligase, n-terminal domain protein;
PDBTitle: structures of archaeal members of the ligd 3'-phosphoesterase dna2 repair enzyme superfamily
17c5fwhA_



8.8 56
PDB header:structural protein
Chain: A: PDB Molecule:essc;
PDBTitle: n-terminal fha domain from essc a component of the2 bacterial type vii secretion apparatus
18c2wk1A_



8.3 39
PDB header:transferase
Chain: A: PDB Molecule:novp;
PDBTitle: structure of the o-methyltransferase novp
19c2n6rA_



8.0 50
PDB header:toxin
Chain: A: PDB Molecule:u4-hexatoxin-hi1a;
PDBTitle: nmr structure of spider toxin u4-hexatoxin-hi1a
20d2pkgc1



7.7 36
Fold:T-antigen specific domain-like
Superfamily:T-antigen specific domain-like
Family:T-antigen specific domain-like
21c4ui9D_



not modelled 7.7 56
PDB header:cell cycle
Chain: D: PDB Molecule:anaphase-promoting complex subunit 15;
PDBTitle: atomic structure of the human anaphase-promoting complex
22d2akja1



not modelled 7.6 16
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:Duplicated SiR/NiR-like domains 1 and 3
23d1ytda2



not modelled 7.5 20
Fold:alpha/beta-Hammerhead
Superfamily:Nicotinate/Quinolinate PRTase N-terminal domain-like
Family:NadC N-terminal domain-like
24c2akjA_



not modelled 7.3 31
PDB header:oxidoreductase
Chain: A: PDB Molecule:ferredoxin--nitrite reductase, chloroplast;
PDBTitle: structure of spinach nitrite reductase
25d1xp8a2



not modelled 7.0 32
Fold:Anti-LPS factor/recA domain
Superfamily:RecA protein, C-terminal domain
Family:RecA protein, C-terminal domain
26c4bgoA_



not modelled 6.8 18
PDB header:hydrolase
Chain: A: PDB Molecule:efem m75 peptidase;
PDBTitle: structural and functional role of the imelysin-like protein2 efem from pseudomonas syringae pv. syringae and3 implications in bacterial iron transport
27c4pwuC_



not modelled 6.3 58
PDB header:signaling protein
Chain: C: PDB Molecule:modulator protein mzra;
PDBTitle: crystal structure of a modulator protein mzra (kpn_03524) from2 klebsiella pneumoniae subsp. pneumoniae mgh 78578 at 2.45 a3 resolution
28c2l2rA_



not modelled 6.2 71
PDB header:antimicrobial protein
Chain: A: PDB Molecule:antimicrobial peptide ecamp1;
PDBTitle: helical hairpin structure of a novel antimicrobial peptide ecamp1 from2 seeds of barnyard grass (echinochloa crus-galli)
29d2gboa1



not modelled 6.2 22
Fold:Open three-helical up-and-down bundle
Superfamily:EF2458-like
Family:EF2458-like
30c2gboB_



not modelled 6.2 22
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:upf0358 protein ef2458;
PDBTitle: protein of unknown function ef2458 from enterococcus faecalis
31c1h7jA_



not modelled 6.1 67
PDB header:acyltransferase
Chain: A: PDB Molecule:aminolevulinic acid synthase 2, erythroid;
PDBTitle: solution structure of the 26 aa presequence of 5-alas
32d1f6fa_



not modelled 6.0 18
Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Long-chain cytokines
33c2lgxA_



not modelled 5.5 50
PDB header:cell adhesion
Chain: A: PDB Molecule:fermitin family homolog 2;
PDBTitle: nmr structure for kindle-2 n-terminus

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite