Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0028_(-)_31514_31819
DateTue Jul 23 14:50:05 BST 2019
Unique Job IDab2bebf15c7025ca
SequenceMTDANPAFDT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:34.206 Y:32.518 Z:24.125
Model (left) based on template c2gidP_
Top template information
PDB header:translation
Chain: P: PDB Molecule:mitochondrial rna-binding protein 2;
PDBTitle: crystal structures of trypanosoma bruciei mrp1/mrp2
Confidence and coverage
Confidence: 35.5% Coverage: 22%
22 residues ( 22% of your sequence) have been modelled with 35.5% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2gidP_



35.5 45
PDB header:translation
Chain: P: PDB Molecule:mitochondrial rna-binding protein 2;
PDBTitle: crystal structures of trypanosoma bruciei mrp1/mrp2
2d2giaa1



32.9 45
Fold:ssDNA-binding transcriptional regulator domain
Superfamily:ssDNA-binding transcriptional regulator domain
Family:Guide RNA binding protein gBP
3d1puga_



26.0 12
Fold:YbaB-like
Superfamily:YbaB-like
Family:YbaB-like
4d1qnta2



21.1 31
Fold:Ribonuclease H-like motif
Superfamily:Methylated DNA-protein cysteine methyltransferase domain
Family:Methylated DNA-protein cysteine methyltransferase domain
5d1j8ba_



18.8 12
Fold:YbaB-like
Superfamily:YbaB-like
Family:YbaB-like
6d3boja1



17.1 34
Fold:CdCA1 repeat-like
Superfamily:CdCA1 repeat-like
Family:CdCA1 repeat-like
7d3boea1



16.0 31
Fold:CdCA1 repeat-like
Superfamily:CdCA1 repeat-like
Family:CdCA1 repeat-like
8d2dnaa1



15.8 50
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
9c6qb7A_



15.5 26
PDB header:signaling protein
Chain: A: PDB Molecule:btb/poz domain-containing protein kctd16;
PDBTitle: structure of the h1 domain of human kctd16
10c6m8sM_



14.9 37
PDB header:signaling protein
Chain: M: PDB Molecule:btb/poz domain-containing protein kctd12;
PDBTitle: crystal structure of the kctd12 h1 domain in complex with gbeta1gamma22 subunits
11c3rlcA_



13.8 41
PDB header:structural protein
Chain: A: PDB Molecule:a1 protein;
PDBTitle: crystal structure of the read-through domain from bacteriophage qbeta2 a1 protein, hexagonal crystal form
12c4b86H_



12.1 33
PDB header:gene regulation
Chain: H: PDB Molecule:male-specific lethal 2 homolog;
PDBTitle: crystal structure of the msl1-msl2 complex (3.5a)
13c2yrvA_



11.9 26
PDB header:transcription
Chain: A: PDB Molecule:at-rich interactive domain-containing protein 4a;
PDBTitle: solution structure of the rbb1nt domain of human2 rb(retinoblastoma)-binding protein 1
14d2daha1



11.1 46
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
15c2cwbA_



10.3 36
PDB header:protein binding
Chain: A: PDB Molecule:chimera of immunoglobulin g binding protein g
PDBTitle: solution structure of the ubiquitin-associated domain of2 human bmsc-ubp and its complex with ubiquitin
16d5csma_



10.2 36
Fold:Chorismate mutase II
Superfamily:Chorismate mutase II
Family:Allosteric chorismate mutase
17d1gjja2



10.0 30
Fold:LEM/SAP HeH motif
Superfamily:LEM domain
Family:LEM domain
18c1wr1B_



9.9 23
PDB header:signaling protein
Chain: B: PDB Molecule:ubiquitin-like protein dsk2;
PDBTitle: the complex sturcture of dsk2p uba with ubiquitin
19c2dnaA_



9.6 54
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:unnamed protein product;
PDBTitle: solution structure of rsgi ruh-056, a uba domain from mouse2 cdna
20d2bwba1



9.5 23
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
21c2l81A_



not modelled 9.5 46
PDB header:cell adhesion
Chain: A: PDB Molecule:enhancer of filamentation 1;
PDBTitle: solution nmr structure of the serine-rich domain of hef1 (enhancer of2 filamentation 1) from homo sapiens, northeast structural genomics3 consortium target hr5554a
22d1vg5a_



not modelled 9.4 47
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
23c5w6yB_



not modelled 9.3 43
PDB header:biosynthetic protein,isomerase
Chain: B: PDB Molecule:chorismate mutase;
PDBTitle: physcomitrella patens chorismate mutase
24c2knpA_



not modelled 9.0 75
PDB header:unknown function
Chain: A: PDB Molecule:mcocc-1;
PDBTitle: isolation and characterization of peptides from momordica2 cochinchinensis seeds.
25d1veja1



not modelled 9.0 54
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
26c2rrdA_



not modelled 8.9 24
PDB header:dna binding protein
Chain: A: PDB Molecule:hrdc domain from bloom syndrome protein;
PDBTitle: structure of hrdc domain from human bloom syndrome protein, blm
27c2jy5A_



not modelled 8.8 62
PDB header:signaling protein
Chain: A: PDB Molecule:ubiquilin-1;
PDBTitle: nmr structure of ubiquilin 1 uba domain
28c2dahA_



not modelled 8.8 46
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ubiquilin-3;
PDBTitle: solution structure of the c-terminal uba domain in the2 human ubiquilin 3
29c4ppuA_



not modelled 8.6 29
PDB header:isomerase
Chain: A: PDB Molecule:chorismate mutase 1, chloroplastic;
PDBTitle: crystal structure of atcm1 with tyrosine bound in allosteric site
30c6nw8A_



not modelled 8.6 75
PDB header:toxin
Chain: A: PDB Molecule:cn29;
PDBTitle: solution structure of cn29, a toxin from centruroides noxius scorpion2 venom
31c1k87A_



not modelled 8.0 40
PDB header:oxidoreductase
Chain: A: PDB Molecule:proline dehydrogenase;
PDBTitle: crystal structure of e.coli puta (residues 1-669)
32c4yepA_



not modelled 7.5 33
PDB header:sugar binding protein
Chain: A: PDB Molecule:laminin subunit alpha-2;
PDBTitle: l4b domain of human laminin alpha-2
33c2b68A_



not modelled 7.2 83
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin;
PDBTitle: solution structure of the recombinant crassostrea gigas2 defensin
34c6eu1Q_



not modelled 7.2 29
PDB header:transcription
Chain: Q: PDB Molecule:dna-directed rna polymerase iii subunit rpc7;
PDBTitle: rna polymerase iii - open dna complex (oc-pol3)
35c3lfkC_



not modelled 6.9 36
PDB header:unknown function
Chain: C: PDB Molecule:marr like protein, tvg0766549;
PDBTitle: a reported archaeal mechanosensitive channel is a structural2 homolog of marr-like transcriptional regulators
36c1ko6A_



not modelled 6.8 34
PDB header:transferase
Chain: A: PDB Molecule:nuclear pore complex protein nup98;
PDBTitle: crystal structure of c-terminal autoproteolytic domain of2 nucleoporin nup98
37c6h3pB_



not modelled 6.6 36
PDB header:plant protein
Chain: B: PDB Molecule:chorismate mutase;
PDBTitle: crystal structure of the cytoplasmic chorismate mutase from zea mays
38d1tj1a2



not modelled 6.5 31
Fold:TIM beta/alpha-barrel
Superfamily:FAD-linked oxidoreductase
Family:Proline dehydrohenase domain of bifunctional PutA protein
39c4h6rA_



not modelled 6.3 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:proline dehydrogenase;
PDBTitle: structure of reduced deinococcus radiodurans proline dehydrogenase
40c2ekgB_



not modelled 6.1 26
PDB header:oxidoreductase
Chain: B: PDB Molecule:proline dehydrogenase/delta-1-pyrroline-5-carboxylate
PDBTitle: structure of thermus thermophilus proline dehydrogenase inactivated by2 n-propargylglycine
41d2ijra1



not modelled 5.7 21
Fold:Api92-like
Superfamily:Api92-like
Family:Api92-like
42d2cxfa1



not modelled 5.6 20
Fold:RUN domain-like
Superfamily:RUN domain-like
Family:RUN domain
43d1u58a2



not modelled 5.4 33
Fold:MHC antigen-recognition domain
Superfamily:MHC antigen-recognition domain
Family:MHC antigen-recognition domain
44c2jvuA_



not modelled 5.2 54
PDB header:unknown function
Chain: A: PDB Molecule:dispersin;
PDBTitle: solution structure of dispersin from enteroaggregative escherichia2 coli
45d1icaa_



not modelled 5.1 58
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Scorpion toxin-like
Family:Insect defensins

Binding site prediction 

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