Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0029_(-)_32057_33154
DateTue Jul 23 14:50:05 BST 2019
Unique Job ID79238f393a7e8187
SequenceVAIFGRWSAR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:40.809 Y:51.454 Z:62.276
Model (left) based on template c5imuA_
Top template information
PDB header:signaling protein
Chain: A: PDB Molecule:tat (twin-arginine translocation) pathway signal sequence
PDBTitle: a fragment of conserved hypothetical protein rv3899c (residues 184-2 410) from mycobacterium tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 57%
209 residues ( 57% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5imuA_



100.0 34
PDB header:signaling protein
Chain: A: PDB Molecule:tat (twin-arginine translocation) pathway signal sequence
PDBTitle: a fragment of conserved hypothetical protein rv3899c (residues 184-2 410) from mycobacterium tuberculosis
2c5ganC_



42.5 24
PDB header:transcription
Chain: C: PDB Molecule:pre-mrna-splicing factor snu114;
PDBTitle: the overall structure of the yeast spliceosomal u4/u6.u5 tri-snrnp at2 3.7 angstrom
3c3jb9B_



37.3 27
PDB header:rna binding protein/rna
Chain: B: PDB Molecule:pre-mrna-splicing factor cwf10;
PDBTitle: cryo-em structure of the yeast spliceosome at 3.6 angstrom resolution
4c5mqfB_



35.5 35
PDB header:splicing
Chain: B: PDB Molecule:116 kda u5 small nuclear ribonucleoprotein component;
PDBTitle: cryo-em structure of a human spliceosome activated for step 2 of2 splicing (c* complex)
5d1afra_



35.1 20
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
6c6cknA_



35.0 20
PDB header:dna binding protein
Chain: A: PDB Molecule:protein af-10;
PDBTitle: crystal structure of an af10 fragment
7c5lj3C_



32.1 24
PDB header:splicing
Chain: C: PDB Molecule:pre-mrna-splicing factor snu114;
PDBTitle: structure of the core of the yeast spliceosome immediately after2 branching
8c3en0A_



24.5 18
PDB header:hydrolase
Chain: A: PDB Molecule:cyanophycinase;
PDBTitle: the structure of cyanophycinase
9d1bola_



23.8 50
Fold:Ribonuclease Rh-like
Superfamily:Ribonuclease Rh-like
Family:Ribonuclease Rh-like
10c3t0oA_



22.2 63
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease t2;
PDBTitle: crystal structure analysis of human rnase t2
11d1iooa_



21.0 63
Fold:Ribonuclease Rh-like
Superfamily:Ribonuclease Rh-like
Family:Ribonuclease Rh-like
12c5z58C_



20.3 36
PDB header:splicing
Chain: C: PDB Molecule:116 kda u5 small nuclear ribonucleoprotein component;
PDBTitle: cryo-em structure of a human activated spliceosome (early bact) at 4.92 angstrom.
13c1nchA_



19.7 40
PDB header:cell adhesion protein
Chain: A: PDB Molecule:n-cadherin;
PDBTitle: structural basis of cell-cell adhesion by cadherins
14d1iqqa_



19.6 24
Fold:Ribonuclease Rh-like
Superfamily:Ribonuclease Rh-like
Family:Ribonuclease Rh-like
15d2fc6a1



19.0 46
Fold:CCCH zinc finger
Superfamily:CCCH zinc finger
Family:CCCH zinc finger
16d1ucda_



19.0 63
Fold:Ribonuclease Rh-like
Superfamily:Ribonuclease Rh-like
Family:Ribonuclease Rh-like
17d1sgla_



18.5 50
Fold:Ribonuclease Rh-like
Superfamily:Ribonuclease Rh-like
Family:Ribonuclease Rh-like
18d1d0gr3



17.6 60
Fold:TNF receptor-like
Superfamily:TNF receptor-like
Family:TNF receptor-like
19d1jy5a_



17.5 50
Fold:Ribonuclease Rh-like
Superfamily:Ribonuclease Rh-like
Family:Ribonuclease Rh-like
20c2mv3A_



16.6 23
PDB header:nucleotide binding protein
Chain: A: PDB Molecule:mitochondrial inner membrane i-aaa protease supercomplex
PDBTitle: the n-domain of the aaa metalloproteinase yme1 from saccharomyces2 cerevisiae
21d1d4va3



not modelled 16.4 60
Fold:TNF receptor-like
Superfamily:TNF receptor-like
Family:TNF receptor-like
22c2fc6A_



not modelled 16.2 46
PDB header:transcription
Chain: A: PDB Molecule:target of egr1, member 1;
PDBTitle: solution structure of the zf-ccch domain of target of egr1,2 member 1 (nuclear)
23c5ancK_



not modelled 15.1 12
PDB header:translation
Chain: K: PDB Molecule:elongation factor tu gtp-binding domain-containing protein
PDBTitle: mechanism of eif6 release from the nascent 60s ribosomal subunit
24d1dixa_



not modelled 15.1 31
Fold:Ribonuclease Rh-like
Superfamily:Ribonuclease Rh-like
Family:Ribonuclease Rh-like
25d2p0ta1



not modelled 14.6 28
Fold:PSPTO4464-like
Superfamily:PSPTO4464-like
Family:PSPTO4464-like
26c2p0tA_



not modelled 14.6 28
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0307 protein pspto_4464;
PDBTitle: structural genomics, the crystal structure of a conserved putative2 protein from pseudomonas syringae pv. tomato str. dc3000
27c4k59A_



not modelled 14.1 36
PDB header:rna binding protein
Chain: A: PDB Molecule:rna binding protein rsmf;
PDBTitle: crystal structure of pseudomonas aeruginosa rsmf
28c2pqxA_



not modelled 14.0 50
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease i;
PDBTitle: e. coli rnase 1 (in vivo folded)
29c3ff8B_



not modelled 13.5 60
PDB header:cell adhesion/immune system
Chain: B: PDB Molecule:epithelial cadherin;
PDBTitle: structure of nk cell receptor klrg1 bound to e-cadherin
30d1iyba_



not modelled 13.4 29
Fold:Ribonuclease Rh-like
Superfamily:Ribonuclease Rh-like
Family:Ribonuclease Rh-like
31c3d3zA_



not modelled 12.6 35
PDB header:hydrolase
Chain: A: PDB Molecule:actibind;
PDBTitle: crystal structure of actibind a t2 rnase
32c1vd3A_



not modelled 12.4 29
PDB header:hydrolase
Chain: A: PDB Molecule:rnase ngr3;
PDBTitle: ribonuclease nt in complex with 2'-ump
33c3jcrB_



not modelled 12.4 35
PDB header:splicing
Chain: B: PDB Molecule:hsnu114;
PDBTitle: 3d structure determination of the human*u4/u6.u5* tri-snrnp complex
34c2r9aA_



not modelled 12.0 31
PDB header:protein binding
Chain: A: PDB Molecule:non-homologous end-joining factor 1;
PDBTitle: crystal structure of human xlf
35c6fcxA_



not modelled 11.9 41
PDB header:oxidoreductase
Chain: A: PDB Molecule:methylenetetrahydrofolate reductase;
PDBTitle: structure of human 5,10-methylenetetrahydrofolate reductase (mthfr)
36d1ncia_



not modelled 11.6 43
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Cadherin-like
Family:Cadherin
37c1nciA_



not modelled 11.6 43
PDB header:cell adhesion protein
Chain: A: PDB Molecule:n-cadherin;
PDBTitle: structural basis of cell-cell adhesion by cadherins
38c5frgA_



not modelled 11.5 27
PDB header:protein binding
Chain: A: PDB Molecule:formin-binding protein 1-like;
PDBTitle: the nmr structure of the cdc42-interacting region of toca1
39c4bfhA_



not modelled 11.3 50
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:wrightide r1;
PDBTitle: crystal structure of alpha-amylase inhibitor wrightide r1 (wr1)2 peptide from wrightia religiosa
40c2mauA_



not modelled 11.0 50
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:wrightide r1;
PDBTitle: solution structure of alpha-amylase inhibitor wrightide r1 (wr1)2 peptide from wrightia religiosa
41d3er7a1



not modelled 10.8 58
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Exig0174-like
42c5yrzD_



not modelled 10.3 100
PDB header:antitoxin/hydrolase
Chain: D: PDB Molecule:hica;
PDBTitle: toxin-antitoxin complex from streptococcus pneumoniae
43c5yrzB_



not modelled 10.3 100
PDB header:antitoxin/hydrolase
Chain: B: PDB Molecule:hica;
PDBTitle: toxin-antitoxin complex from streptococcus pneumoniae
44c6k6lA_



not modelled 10.0 50
PDB header:unknown function
Chain: A: PDB Molecule:pseudo deubiquitinase;
PDBTitle: ygl082w-catalytic domain
45c1nchB_



not modelled 9.9 55
PDB header:cell adhesion protein
Chain: B: PDB Molecule:n-cadherin;
PDBTitle: structural basis of cell-cell adhesion by cadherins
46c3t97A_



not modelled 9.4 33
PDB header:protein transport
Chain: A: PDB Molecule:nuclear pore glycoprotein p62;
PDBTitle: molecular architecture of the transport channel of the nuclear pore2 complex: nup62/nup54
47c3uwsA_



not modelled 9.4 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a clostripain (parmer_00083) from parabacteroides2 merdae atcc 43184 at 1.70 a resolution
48c5jknA_



not modelled 9.4 38
PDB header:hydrolase
Chain: A: PDB Molecule:protein fam63a;
PDBTitle: crystal structure of deubiquitinase mindy-1
49c1zvnA_



not modelled 9.3 25
PDB header:cell adhesion
Chain: A: PDB Molecule:cadherin 1;
PDBTitle: crystal structure of chick mn-cadherin ec1
50d1gv0a2



not modelled 9.2 63
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
51c5gkeB_



not modelled 9.1 42
PDB header:hydrolase/dna
Chain: B: PDB Molecule:endonuclease endoms;
PDBTitle: structure of endoms-dsdna1 complex
52d2omwb1



not modelled 8.9 50
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Cadherin-like
Family:Cadherin
53c6cg7A_



not modelled 8.8 27
PDB header:cell adhesion
Chain: A: PDB Molecule:cadherin-22;
PDBTitle: mouse cadherin-22 ec1-2 adhesive fragment
54d1kifa1



not modelled 8.7 17
Fold:Nucleotide-binding domain
Superfamily:Nucleotide-binding domain
Family:D-aminoacid oxidase, N-terminal domain
55d1guza2



not modelled 8.7 50
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
56c2axcA_



not modelled 8.6 20
PDB header:hydrolase
Chain: A: PDB Molecule:colicin e7;
PDBTitle: crystal structure of cole7 translocation domain
57c2lm0A_



not modelled 8.3 13
PDB header:nuclear protein
Chain: A: PDB Molecule:af4/fmr2 family member 1/protein af-9 chimera;
PDBTitle: solution structure of the af4-af9 complex
58c4ozwA_



not modelled 8.1 22
PDB header:lyase
Chain: A: PDB Molecule:alginate lyase;
PDBTitle: crystal structure of the periplasmic alginate lyase algl h202a mutant
59c1q67B_



not modelled 8.0 21
PDB header:transcription
Chain: B: PDB Molecule:decapping protein involved in mrna degradation-
PDBTitle: crystal structure of dcp1p
60d1uxja2



not modelled 7.9 50
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
61c2kwtA_



not modelled 7.8 67
PDB header:viral protein
Chain: A: PDB Molecule:protease ns2-3;
PDBTitle: solution structure of ns2 [27-59]
62c4eo1A_



not modelled 7.6 43
PDB header:viral protein
Chain: A: PDB Molecule:attachment protein g3p;
PDBTitle: crystal structure of the tola binding domain from the filamentous2 phage ike
63c2ju0B_



not modelled 7.6 41
PDB header:metal binding protein/signaling protein
Chain: B: PDB Molecule:phosphatidylinositol 4-kinase pik1;
PDBTitle: structure of yeast frequenin bound to pdtins 4-kinase
64c4g4mA_



not modelled 7.5 50
PDB header:de novo protein
Chain: A: PDB Molecule:alpha4f3(6-13);
PDBTitle: crystal structure of the de novo designed fluorinated peptide2 alpha4f3(6-13)
65c4g4mB_



not modelled 7.5 50
PDB header:de novo protein
Chain: B: PDB Molecule:alpha4f3(6-13);
PDBTitle: crystal structure of the de novo designed fluorinated peptide2 alpha4f3(6-13)
66c4o2tB_



not modelled 7.5 24
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf4827 family protein (bdi_1692) from2 parabacteroides distasonis atcc 8503 at 2.40 a resolution
67c1yzxB_



not modelled 7.3 16
PDB header:transferase
Chain: B: PDB Molecule:glutathione s-transferase kappa 1;
PDBTitle: crystal structure of human kappa class glutathione transferase
68c2x3mA_



not modelled 7.3 29
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein orf239;
PDBTitle: crystal structure of hypothetical protein orf239 from pyrobaculum2 spherical virus
69c3l32B_



not modelled 7.2 14
PDB header:viral protein
Chain: B: PDB Molecule:phosphoprotein;
PDBTitle: structure of the dimerisation domain of the rabies virus2 phosphoprotein
70d2cvea2



not modelled 7.2 41
Fold:Ferredoxin-like
Superfamily:EF-G C-terminal domain-like
Family:YigZ C-terminal domain-like
71d2cuab_



not modelled 7.2 31
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Periplasmic domain of cytochrome c oxidase subunit II
72c1yxeA_



not modelled 7.1 57
PDB header:immune system
Chain: A: PDB Molecule:apical membrane antigen 1;
PDBTitle: structure and inter-domain interactions of domain ii from the blood2 stage malarial protein, apical membrane antigen 1
73c3ejkA_



not modelled 6.9 38
PDB header:isomerase
Chain: A: PDB Molecule:dtdp sugar isomerase;
PDBTitle: crystal structure of dtdp sugar isomerase (yp_390184.1) from2 desulfovibrio desulfuricans g20 at 1.95 a resolution
74c2pmpA_



not modelled 6.7 18
PDB header:lyase
Chain: A: PDB Molecule:2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase;
PDBTitle: structure of 2c-methyl-d-erythritol 2,4-cyclodiphosphate synthase from2 the isoprenoid biosynthetic pathway of arabidopsis thaliana
75c2ke4A_



not modelled 6.6 22
PDB header:membrane protein
Chain: A: PDB Molecule:cdc42-interacting protein 4;
PDBTitle: the nmr structure of the tc10 and cdc42 interacting domain2 of cip4
76c5wbuR_



not modelled 6.4 63
PDB header:transferase
Chain: R: PDB Molecule:proline-rich akt1 substrate 1;
PDBTitle: crystal structure of mtor(deltan)-mlst8-pras40(alpha-helix & beta-2 strand) complex
77c5wbuQ_



not modelled 6.4 63
PDB header:transferase
Chain: Q: PDB Molecule:proline-rich akt1 substrate 1;
PDBTitle: crystal structure of mtor(deltan)-mlst8-pras40(alpha-helix & beta-2 strand) complex
78d1ejxb_



not modelled 6.3 44
Fold:beta-clip
Superfamily:Urease, beta-subunit
Family:Urease, beta-subunit
79c3j9tb_



not modelled 6.2 71
PDB header:hydrolase
Chain: B: PDB Molecule:v-type proton atpase subunit b;
PDBTitle: yeast v-atpase state 1
80c5fujB_



not modelled 6.2 63
PDB header:oxidoreductase
Chain: B: PDB Molecule:mroupo;
PDBTitle: crystallization of a dimeric heme peroxygenase from the2 fungus marasmius rotula
81c3fybA_



not modelled 6.1 41
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein of unknown function (duf1244);
PDBTitle: crystal structure of a protein of unknown function (duf1244) from2 alcanivorax borkumensis
82c3biyA_



not modelled 6.1 20
PDB header:transferase
Chain: A: PDB Molecule:histone acetyltransferase p300;
PDBTitle: crystal structure of p300 histone acetyltransferase domain in complex2 with a bisubstrate inhibitor, lys-coa
83c2kneB_



not modelled 6.1 67
PDB header:metal transport
Chain: B: PDB Molecule:atpase, ca++ transporting, plasma membrane 4;
PDBTitle: calmodulin wraps around its binding domain in the plasma2 membrane ca2+ pump anchored by a novel 18-1 motif
84c2mzyA_



not modelled 6.1 56
PDB header:iron binding protein
Chain: A: PDB Molecule:probable fe(2+)-trafficking protein;
PDBTitle: 1h, 13c, and 15n chemical shift assignments and structure of probable2 fe(2+)-trafficking protein from burkholderia pseudomallei 1710b.
85c2mitA_



not modelled 6.0 86
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: solution structure of oxidized dimeric form of human defensin 5
86d2omzb1



not modelled 5.9 42
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Cadherin-like
Family:Cadherin
87c1cffB_



not modelled 5.9 67
PDB header:calmodulin
Chain: B: PDB Molecule:calcium pump;
PDBTitle: nmr solution structure of a complex of calmodulin with a binding2 peptide of the ca2+-pump
88d1lmb3_



not modelled 5.9 18
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
89c4e86H_



not modelled 5.9 86
PDB header:antimicrobial protein
Chain: H: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29aba mutant)
90c4e86D_



not modelled 5.9 86
PDB header:antimicrobial protein
Chain: D: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29aba mutant)
91d2qtva2



not modelled 5.9 38
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:beta-sandwich domain of Sec23/24
Family:beta-sandwich domain of Sec23/24
92c4rbxA_



not modelled 5.9 86
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (glu21arg mutant)
93d2eyqa2



not modelled 5.9 23
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
94c1zmpA_



not modelled 5.8 86
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin 5;
PDBTitle: crystal structure of human defensin-5
95c2lxzA_



not modelled 5.8 86
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: solution structure of the antimicrobial peptide human defensin 5
96c1zmpB_



not modelled 5.8 86
PDB header:antimicrobial protein
Chain: B: PDB Molecule:defensin 5;
PDBTitle: crystal structure of human defensin-5
97c4z42B_



not modelled 5.8 22
PDB header:hydrolase
Chain: B: PDB Molecule:urease subunit beta;
PDBTitle: crystal structure of urease from yersinia enterocolitica
98c1zmpC_



not modelled 5.8 86
PDB header:antimicrobial protein
Chain: C: PDB Molecule:defensin 5;
PDBTitle: crystal structure of human defensin-5
99c4e83A_



not modelled 5.8 86
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-5;
PDBTitle: crystal structure of human alpha-defensin 5, hd5 (leu29nle mutant)

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