Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0048c_(-)_51828_52697
DateTue Jul 23 14:50:07 BST 2019
Unique Job ID4a44232ef896e475
SequenceVAKWLGAPLA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:28.220 Y:21.390 Z:31.775
Model (left) based on template d2pp4a1
Top template information
Fold:TAFH domain-like
Superfamily:TAFH domain-like
Family:TAFH domain-like
Confidence and coverage
Confidence: 47.5% Coverage: 15%
43 residues ( 15% of your sequence) have been modelled with 47.5% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2pp4a1
47.5 19
Fold:TAFH domain-like
Superfamily:TAFH domain-like
Family:TAFH domain-like
2d2caza1
47.3 18
Fold:Long alpha-hairpin
Superfamily:Endosomal sorting complex assembly domain
Family:VPS23 C-terminal domain
3d2f6ma1
47.1 18
Fold:Long alpha-hairpin
Superfamily:Endosomal sorting complex assembly domain
Family:VPS23 C-terminal domain
4c2cazD_
47.0 18
PDB header:protein transport
Chain: D: PDB Molecule:suppressor protein stp22 of temperature-sensitive alpha-
PDBTitle: escrt-i core
5c3s6kA_
28.5 14
PDB header:transferase
Chain: A: PDB Molecule:acetylglutamate kinase;
PDBTitle: crystal structure of xcnags
6d2p6va1
23.9 17
Fold:TAFH domain-like
Superfamily:TAFH domain-like
Family:TAFH domain-like
7c4egeA_
23.1 29
PDB header:hydrolase
Chain: A: PDB Molecule:dipeptidase pepe;
PDBTitle: crystal structure of dipeptidase pepe from mycobacterium ulcerans
8c5vj7B_
20.1 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:ferredoxin-nadp(+) reductase subunit alpha;
PDBTitle: ferredoxin nadp oxidoreductase (xfn)
9d2pnwa1
18.2 53
Fold:Double psi beta-barrel
Superfamily:Barwin-like endoglucanases
Family:MLTA-like
10c1ponB_
17.0 21
PDB header:calcium-binding protein
Chain: B: PDB Molecule:troponin c;
PDBTitle: site iii-site iv troponin c heterodimer, nmr
11c2odrC_
16.4 17
PDB header:ligase
Chain: C: PDB Molecule:phosphoseryl-trna synthetase;
PDBTitle: methanococcus maripaludis phosphoseryl-trna synthetase
12d1vbka2
16.4 22
Fold:THUMP domain
Superfamily:THUMP domain-like
Family:THUMP domain
13d1nosa_
16.3 27
Fold:Nitric oxide (NO) synthase oxygenase domain
Superfamily:Nitric oxide (NO) synthase oxygenase domain
Family:Nitric oxide (NO) synthase oxygenase domain
14d2p12a1
15.5 25
Fold:FomD barrel-like
Superfamily:FomD-like
Family:FomD-like
15c3e56A_
15.2 44
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: the 2.0 angstrom resolution crystal structure of npr1517, a putative2 heterocyst differentiation inhibitor from nostoc punctiforme
16d1j6ua2
14.0 17
Fold:MurD-like peptide ligases, peptide-binding domain
Superfamily:MurD-like peptide ligases, peptide-binding domain
Family:MurCDEF C-terminal domain
17d2g5da1
13.9 29
Fold:Double psi beta-barrel
Superfamily:Barwin-like endoglucanases
Family:MLTA-like
18c6f6jC_
13.7 18
PDB header:oxidoreductase
Chain: C: PDB Molecule:l-lysine 3-hydroxylase;
PDBTitle: crystal structure of the fe(ii)/alpha-ketoglutarate dependent2 dioxygenase kdo1 with fe(ii)/succinate/(3s)-3-hydroxy-l-lysine
19c3l20A_
13.1 29
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a hypothetical protein from staphylococcus aureus
20d2azeb1
11.8 6
Fold:E2F-DP heterodimerization region
Superfamily:E2F-DP heterodimerization region
Family:E2F dimerization segment
21c5jcaS_
not modelled 11.5 20
PDB header:oxidoreductase
Chain: S: PDB Molecule:nadh-dependent ferredoxin:nadp oxidoreductase (nfni)
PDBTitle: nadp(h) bound nadh-dependent ferredoxin:nadp oxidoreductase (nfni)2 from pyrococcus furiosus
22c2p22A_
not modelled 11.4 18
PDB header:transport protein
Chain: A: PDB Molecule:suppressor protein stp22 of temperature-sensitive alpha-
PDBTitle: structure of the yeast escrt-i heterotetramer core
23c3czbA_
not modelled 11.0 35
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative transglycosylase;
PDBTitle: crystal structure of putative transglycosylase from caulobacter2 crescentus
24c3ff0A_
not modelled 10.1 18
PDB header:biosynthetic protein
Chain: A: PDB Molecule:phenazine biosynthesis protein phzb 2;
PDBTitle: crystal structure of a phenazine biosynthesis-related protein (phzb2)2 from pseudomonas aeruginosa at 1.90 a resolution
25d1lkta_
not modelled 9.5 26
Fold:Head-binding domain of phage P22 tailspike protein
Superfamily:Head-binding domain of phage P22 tailspike protein
Family:Head-binding domain of phage P22 tailspike protein
26c5cwwC_
not modelled 9.3 30
PDB header:transport protein
Chain: C: PDB Molecule:nucleoporin nup159;
PDBTitle: crystal structure of the chaetomium thermophilum heterotrimeric nup822 ntd-nup159 tail-nup145n apd complex
27c3fo8D_
not modelled 9.2 27
PDB header:viral protein
Chain: D: PDB Molecule:tail sheath protein gp18;
PDBTitle: crystal structure of the bacteriophage t4 tail sheath protein,2 protease resistant fragment gp18pr
28c4ylfA_
not modelled 9.0 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydroorotate dehydrogenase b (nad(+)), electron transfer
PDBTitle: insights into flavin-based electron bifurcation via the nadh-dependent2 reduced ferredoxin-nadp oxidoreductase structure
29d1kxpd3
not modelled 8.9 21
Fold:Serum albumin-like
Superfamily:Serum albumin-like
Family:Serum albumin-like
30c4n7vC_
not modelled 8.5 50
PDB header:cell cycle
Chain: C: PDB Molecule:centrosomal protein of 152 kda;
PDBTitle: crystal structure of human plk4 cryptic polo box (cpb) in complex with2 a cep152 n-terminal fragment
31d2bh1x1
not modelled 8.3 25
Fold:Alpha-lytic protease prodomain-like
Superfamily:EspE N-terminal domain-like
Family:GSPII protein E N-terminal domain-like
32c2bh1Y_
not modelled 8.3 25
PDB header:transport protein
Chain: Y: PDB Molecule:general secretion pathway protein e,;
PDBTitle: x-ray structure of the general secretion pathway complex of2 the n-terminal domain of epse and the cytosolic domain of3 epsl of vibrio cholerae
33c1zaxZ_
not modelled 8.1 22
PDB header:structural protein
Chain: Z: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form b
34c1zawU_
not modelled 8.0 22
PDB header:structural protein
Chain: U: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form a
35c1zawW_
not modelled 8.0 22
PDB header:structural protein
Chain: W: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form a
36c1zawV_
not modelled 8.0 22
PDB header:structural protein
Chain: V: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form a
37c4xaeB_
not modelled 8.0 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:feruloyl coa ortho-hydroxylase 1;
PDBTitle: structure of feruloyl-coa 6-hydroxylase (f6h) from arabidopsis2 thaliana
38c4p74D_
not modelled 8.0 17
PDB header:ligase/ligase inhibitor
Chain: D: PDB Molecule:phenylalanine--trna ligase alpha subunit;
PDBTitle: phers in complex with compound 3a
39c2odrD_
not modelled 7.9 17
PDB header:ligase
Chain: D: PDB Molecule:phosphoseryl-trna synthetase;
PDBTitle: methanococcus maripaludis phosphoseryl-trna synthetase
40c6cumA_
not modelled 7.9 27
PDB header:transferase
Chain: A: PDB Molecule:lao/ao transport system atpase;
PDBTitle: crystal structure of a c-terminal proteolytic fragment of a protein2 annotated as an lao/ao transport system atpase but likely meab and3 mmaa-like gtpase from mycobacterium smegmatis
41c1zaxW_
not modelled 7.9 22
PDB header:structural protein
Chain: W: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form b
42d1zavu1
not modelled 7.9 22
Fold:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
Superfamily:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
Family:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
43c1zavU_
not modelled 7.9 22
PDB header:structural protein
Chain: U: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p21
44c1zavV_
not modelled 7.9 22
PDB header:structural protein
Chain: V: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p21
45c1zaxV_
not modelled 7.9 22
PDB header:structural protein
Chain: V: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form b
46c1zavW_
not modelled 7.9 22
PDB header:structural protein
Chain: W: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p21
47c1zaxU_
not modelled 7.9 22
PDB header:structural protein
Chain: U: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form b
48c3li6D_
not modelled 7.8 29
PDB header:metal binding protein
Chain: D: PDB Molecule:calcium-binding protein;
PDBTitle: crystal structure and trimer-monomer transition of n-terminal domain2 of ehcabp1 from entamoeba histolytica
49c4yyfC_
not modelled 7.8 19
PDB header:hydrolase
Chain: C: PDB Molecule:beta-n-acetylhexosaminidase;
PDBTitle: the crystal structure of a glycosyl hydrolase of gh3 family member2 from [mycobacterium smegmatis str. mc2 155
50c2dhyA_
not modelled 7.7 7
PDB header:immune system
Chain: A: PDB Molecule:cue domain-containing protein 1;
PDBTitle: solution structure of the cue domain in the human cue2 domain containing protein 1 (cuedc1)
51c3b4oB_
not modelled 7.6 14
PDB header:biosynthetic protein
Chain: B: PDB Molecule:phenazine biosynthesis protein a/b;
PDBTitle: crystal structure of phenazine biosynthesis protein phza/b2 from burkholderia cepacia r18194, apo form
52d1s6ja_
not modelled 7.6 10
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
53d1ylea1
not modelled 7.5 18
Fold:Acyl-CoA N-acyltransferases (Nat)
Superfamily:Acyl-CoA N-acyltransferases (Nat)
Family:AstA-like
54c1rqtA_
not modelled 7.5 27
PDB header:ribosome
Chain: A: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: nmr structure of dimeric n-terminal domain of ribosomal2 protein l7 from e.coli
55c1rqtB_
not modelled 7.5 27
PDB header:ribosome
Chain: B: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: nmr structure of dimeric n-terminal domain of ribosomal2 protein l7 from e.coli
56d1rqta_
not modelled 7.5 27
Fold:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
Superfamily:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
Family:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
57d3orca_
not modelled 7.4 17
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
58d2hw4a1
not modelled 7.3 33
Fold:PHP14-like
Superfamily:PHP14-like
Family:Janus/Ocnus
59c6b2zd_
not modelled 7.2 30
PDB header:membrane protein
Chain: D: PDB Molecule:atp synthase subunit c, mitochondrial;
PDBTitle: cryo-em structure of the dimeric fo region of yeast mitochondrial atp2 synthase
60c4hicA_
not modelled 7.2 26
PDB header:unknown function
Chain: A: PDB Molecule:trak;
PDBTitle: crystal structure of the potential transfer protein trak from gram-2 positive conjugative plasmid pip501
61d1dd4c_
not modelled 7.1 22
Fold:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
Superfamily:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
Family:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
62c2fqhA_
not modelled 7.1 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ta0938;
PDBTitle: nmr structure of hypothetical protein ta0938 from2 termoplasma acidophilum
63d1dd3a1
not modelled 7.1 22
Fold:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
Superfamily:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
Family:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
64c1dd3C_
not modelled 7.0 25
PDB header:ribosome
Chain: C: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: crystal structure of ribosomal protein l12 from thermotoga maritima
65c1dd3D_
not modelled 7.0 25
PDB header:ribosome
Chain: D: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: crystal structure of ribosomal protein l12 from thermotoga maritima
66d2hh8a1
not modelled 7.0 18
Fold:YdfO-like
Superfamily:YdfO-like
Family:YdfO-like
67d1jj2h_
not modelled 7.0 14
Fold:alpha/beta-Hammerhead
Superfamily:Ribosomal protein L16p/L10e
Family:Ribosomal protein L10e
68c3sqlB_
not modelled 6.8 25
PDB header:hydrolase
Chain: B: PDB Molecule:glycosyl hydrolase family 3;
PDBTitle: crystal structure of glycoside hydrolase from synechococcus
69c3mvnA_
not modelled 6.8 17
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-medo-
PDBTitle: crystal structure of a domain from a putative udp-n-acetylmuramate:l-2 alanyl-gamma-d-glutamyl-medo-diaminopimelate ligase from haemophilus3 ducreyi 35000hp
70c2ld7A_
not modelled 6.8 26
PDB header:transcription
Chain: A: PDB Molecule:histone deacetylase complex subunit sap30;
PDBTitle: solution structure of the msin3a pah3-sap30 sid complex
71c3e90B_
not modelled 6.6 22
PDB header:hydrolase
Chain: B: PDB Molecule:ns3 protease;
PDBTitle: west nile vi rus ns2b-ns3protease in complexed with2 inhibitor naph-kkr-h
72d1u7ia_
not modelled 6.4 14
Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family:3-demethylubiquinone-9 3-methyltransferase
73c1t7lA_
not modelled 6.3 26
PDB header:transferase
Chain: A: PDB Molecule:5-methyltetrahydropteroyltriglutamate--homocysteine
PDBTitle: crystal structure of cobalamin-independent methionine synthase from t.2 maritima
74d2ijob1
not modelled 6.3 21
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Viral proteases
75c1wr2A_
not modelled 6.0 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ph1789;
PDBTitle: crystal structure of ph1788 from pyrococcus horikoshii ot3
76d1p3da2
not modelled 5.9 17
Fold:MurD-like peptide ligases, peptide-binding domain
Superfamily:MurD-like peptide ligases, peptide-binding domain
Family:MurCDEF C-terminal domain
77c3ppgA_
not modelled 5.8 16
PDB header:transferase
Chain: A: PDB Molecule:5-methyltetrahydropteroyltriglutamate--homocysteine
PDBTitle: crystal structure of the candida albicans methionine synthase by2 surface entropy reduction, alanine variant with zinc
78c2hw4A_
not modelled 5.7 35
PDB header:structural genomics, hydrolase
Chain: A: PDB Molecule:14 kda phosphohistidine phosphatase;
PDBTitle: crystal structure of human phosphohistidine phosphatase
79c5bzaA_
not modelled 5.7 10
PDB header:hydrolase
Chain: A: PDB Molecule:beta-n-acetylhexosaminidase;
PDBTitle: crystal structure of cbsa from thermotoga neapolitana
80c4pzjA_
not modelled 5.6 4
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, lysr family;
PDBTitle: 1.60 angstrom resolution crystal structure of a transcriptional2 regulator of the lysr family from eggerthella lenta dsm 2243
81d2fp7b1
not modelled 5.6 21
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Viral proteases
82c3h3hA_
not modelled 5.5 4
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized snoal-like protein;
PDBTitle: crystal structure of a snoal-like protein of unknown function2 (bth_ii0226) from burkholderia thailandensis e264 at 1.60 a3 resolution
83c3m1eA_
not modelled 5.5 9
PDB header:transcription regulator
Chain: A: PDB Molecule:hth-type transcriptional regulator benm;
PDBTitle: crystal structure of benm_dbd
84c6odmK_
not modelled 5.4 15
PDB header:viral protein
Chain: K: PDB Molecule:capsid vertex component 2;
PDBTitle: herpes simplex virus type 1 (hsv-1) portal vertex-adjacent2 capsid/catc, asymmetric unit
85d1okia1
not modelled 5.4 20
Fold:gamma-Crystallin-like
Superfamily:gamma-Crystallin-like
Family:Crystallins/Ca-binding development proteins
86c2odrB_
not modelled 5.4 17
PDB header:ligase
Chain: B: PDB Molecule:phosphoseryl-trna synthetase;
PDBTitle: methanococcus maripaludis phosphoseryl-trna synthetase
87c3lkwA_
not modelled 5.4 27
PDB header:viral protein,hydrolase
Chain: A: PDB Molecule:fusion protein of nonstructural protein 2b and
PDBTitle: crystal structure of dengue virus 1 ns2b/ns3 protease active site2 mutant
88c6f5dH_
not modelled 5.4 19
PDB header:hydrolase
Chain: H: PDB Molecule:atp synthase subunit delta, mitochondrial;
PDBTitle: trypanosoma brucei f1-atpase
89d3cjrb1
not modelled 5.3 25
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Ribosomal protein L11, C-terminal domain
Family:Ribosomal protein L11, C-terminal domain
90c2vkyB_
not modelled 5.3 26
PDB header:viral protein
Chain: B: PDB Molecule:tail protein, piigcn4;
PDBTitle: headbinding domain of phage p22 tailspike c-terminally fused to2 isoleucine zipper piigcn4 (chimera i)
91d1ctda_
not modelled 5.1 38
Fold:EF Hand-like
Superfamily:EF-hand
Family:Calmodulin-like
92c4ednO_
not modelled 5.1 55
PDB header:signaling protein/cell adhesion
Chain: O: PDB Molecule:paxillin;
PDBTitle: crystal structure of beta-parvin ch2 domain in complex with paxillin2 ld1 motif
93c5craB_
not modelled 5.1 8
PDB header:hydrolase
Chain: B: PDB Molecule:sdea;
PDBTitle: structure of the sdea dub domain
94c5lc0B_
not modelled 5.0 27
PDB header:hydrolase
Chain: B: PDB Molecule:ns2b-ns3 protease,ns2b-ns3 protease;
PDBTitle: crystal structure of zika virus ns2b-ns3 protease in complex with a2 boronate inhibitor
95d1dd4d_
not modelled 5.0 25
Fold:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
Superfamily:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
Family:Ribosomal protein L7/12, oligomerisation (N-terminal) domain

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below