Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0051_(-)_55693_57375
DateTue Jul 23 14:50:08 BST 2019
Unique Job IDa90288a83de0f0dd
SequenceVTGALSQSSN ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:60.851 Y:45.792 Z:62.897
Model (left) based on template c5f15A_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:4-amino-4-deoxy-l-arabinose (l-ara4n) transferase;
PDBTitle: crystal structure of arnt from cupriavidus metallidurans bound to2 undecaprenyl phosphate
Confidence and coverage
Confidence: 99.0% Coverage: 58%
326 residues ( 58% of your sequence) have been modelled with 99.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
393 residues ( 70%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
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Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5f15A_



99.0 13
PDB header:transferase
Chain: A: PDB Molecule:4-amino-4-deoxy-l-arabinose (l-ara4n) transferase;
PDBTitle: crystal structure of arnt from cupriavidus metallidurans bound to2 undecaprenyl phosphate
2c6p25A_



98.0 14
PDB header:transferase
Chain: A: PDB Molecule:dolichyl-phosphate-mannose--protein mannosyltransferase 1;
PDBTitle: structure of s. cerevisiae protein o-mannosyltransferase pmt1-pmt22 complex bound to the sugar donor and a peptide acceptor
3c6p2rB_



97.8 13
PDB header:transferase
Chain: B: PDB Molecule:dolichyl-phosphate-mannose--protein mannosyltransferase 2;
PDBTitle: structure of s. cerevisiae protein o-mannosyltransferase pmt1-pmt22 complex bound to the sugar donor
4c3wajA_



97.2 15
PDB header:transferase
Chain: A: PDB Molecule:transmembrane oligosaccharyl transferase;
PDBTitle: crystal structure of the archaeoglobus fulgidus2 oligosaccharyltransferase (o29867_arcfu) complex with zn and sulfate
5c6eznF_



65.3 12
PDB header:membrane protein
Chain: F: PDB Molecule:dolichyl-diphosphooligosaccharide--protein
PDBTitle: cryo-em structure of the yeast oligosaccharyltransferase (ost) complex
6c3rceA_



49.3 13
PDB header:transferase/peptide
Chain: A: PDB Molecule:oligosaccharide transferase to n-glycosylate proteins;
PDBTitle: bacterial oligosaccharyltransferase pglb
7c5zihA_



35.0 13
PDB header:membrane protein
Chain: A: PDB Molecule:sensory opsin a,chrimson;
PDBTitle: crystal structure of the red light-activated channelrhodopsin2 chrimson.
8d1xioa_



20.9 9
Fold:Family A G protein-coupled receptor-like
Superfamily:Family A G protein-coupled receptor-like
Family:Bacteriorhodopsin-like
9c1xioA_



20.9 9
PDB header:signaling protein
Chain: A: PDB Molecule:anabaena sensory rhodopsin;
PDBTitle: anabaena sensory rhodopsin
10c3ug9A_



18.6 9
PDB header:membrane protein
Chain: A: PDB Molecule:archaeal-type opsin 1, archaeal-type opsin 2;
PDBTitle: crystal structure of the closed state of channelrhodopsin
11c3dcgF_



9.5 56
PDB header:ligase/viral protein
Chain: F: PDB Molecule:virion infectivity factor;
PDBTitle: crystal structure of the hiv vif bc-box in complex with human elonginb2 and elonginc
12c5v77B_



8.6 30
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of an uncharacterized protein from neisseria2 gonorrhoeae
13c6et5b_



7.9 24
PDB header:photosynthesis
Chain: B: PDB Molecule:
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
14c3fnkA_



6.8 29
PDB header:structural protein
Chain: A: PDB Molecule:cellulosomal scaffoldin adaptor protein b;
PDBTitle: crystal structure of the second type ii cohesin module from the2 cellulosomal adaptor scaa scaffoldin of acetivibrio cellulolyticus
15c1mjeB_



6.8 50
PDB header:gene regulation/antitumor protein/dna
Chain: B: PDB Molecule:deleted in split hand/split foot protein 1;
PDBTitle: structure of a brca2-dss1-ssdna complex
16d1xrda1



6.7 17
Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
17c1xrdA_



6.7 17
PDB header:membrane protein
Chain: A: PDB Molecule:light-harvesting protein b-880, alpha chain;
PDBTitle: light-harvesting complex 1 alfa subunit from wild-type2 rhodospirillum rubrum
18d1nyca_



6.6 33
Fold:Streptavidin-like
Superfamily:beta-Barrel protease inhibitors
Family:Staphostatin
19c3zueB_



6.4 24
PDB header:virus
Chain: B: PDB Molecule:capsid structural protein vp60;
PDBTitle: rabbit hemorrhagic disease virus (rhdv)capsid protein
20c5gy6A_



6.4 25
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease t1;
PDBTitle: ribonuclease from hericium erinaceus (rnase he1)
21c3wmmY_



not modelled 6.2 26
PDB header:photosynthesis
Chain: Y: PDB Molecule:lh1 alpha polypeptide;
PDBTitle: crystal structure of the lh1-rc complex from thermochromatium tepidum2 in c2 form
22c6hwhX_



not modelled 6.2 15
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
23c6adqP_



not modelled 6.1 15
PDB header:electron transport
Chain: P: PDB Molecule:prokaryotic respiratory supercomplex associate factor 1
PDBTitle: respiratory complex ciii2civ2sod2 from mycobacterium smegmatis
24d1tska_



not modelled 5.9 55
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Scorpion toxin-like
Family:Short-chain scorpion toxins
25c2m9lA_



not modelled 5.5 80
PDB header:toxin
Chain: A: PDB Molecule:beta-theraphotoxin-tp1a;
PDBTitle: solution structure of protoxin-1
26d1mxaa3



not modelled 5.4 54
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
27d1qm4a3



not modelled 5.3 46
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
28c5h4eA_



not modelled 5.3 16
PDB header:hydrolase
Chain: A: PDB Molecule:beta 1-3 glucanase;
PDBTitle: crystal structure of a beta-1,3-glucanase domain (gh64) from2 clostridium beijerinckii

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below