Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0053_(rpsF)_58189_58479
DateTue Jul 23 14:50:08 BST 2019
Unique Job IDfb43ea73dbdb0e37
SequenceMRPYEIMVIL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:35.561 Y:43.168 Z:27.784
Model (left) based on template c5o5jF_
Top template information
PDB header:ribosome
Chain: F: PDB Molecule:30s ribosomal protein s6;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
Confidence and coverage
Confidence:100.0% Coverage:100%
96 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5o5jF_



100.0 92
PDB header:ribosome
Chain: F: PDB Molecule:30s ribosomal protein s6;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
2d2j5aa1



100.0 30
Fold:Ferredoxin-like
Superfamily:Ribosomal protein S6
Family:Ribosomal protein S6
3d1loua_



100.0 35
Fold:Ferredoxin-like
Superfamily:Ribosomal protein S6
Family:Ribosomal protein S6
4d1qjha_



100.0 35
Fold:Ferredoxin-like
Superfamily:Ribosomal protein S6
Family:Ribosomal protein S6
5c3bbnF_



100.0 27
PDB header:ribosome
Chain: F: PDB Molecule:ribosomal protein s6;
PDBTitle: homology model for the spinach chloroplast 30s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome.
6c3j0xI_



100.0 33
PDB header:ribosome
Chain: I: PDB Molecule:30s ribosomal protein s6;
PDBTitle: structural characterization of mrna-trna translocation intermediates2 (30s ribosome of class 4b of the six classes)
7c1vmbA_



100.0 29
PDB header:translation
Chain: A: PDB Molecule:30s ribosomal protein s6;
PDBTitle: crystal structure of 30s ribosomal protein s6 (tm0603) from thermotoga2 maritima at 1.70 a resolution
8d1vmba_



100.0 29
Fold:Ferredoxin-like
Superfamily:Ribosomal protein S6
Family:Ribosomal protein S6
9d2qalf1



100.0 34
Fold:Ferredoxin-like
Superfamily:Ribosomal protein S6
Family:Ribosomal protein S6
10c2qbbF_



100.0 34
PDB header:ribosome
Chain: F: PDB Molecule:30s ribosomal protein s6;
PDBTitle: crystal structure of the bacterial ribosome from escherichia coli in2 complex with gentamicin. this file contains the 30s subunit of the3 second 70s ribosome, with gentamicin bound. the entire crystal4 structure contains two 70s ribosomes and is described in remark 400.
11c3r3tA_



99.9 37
PDB header:rna binding protein
Chain: A: PDB Molecule:30s ribosomal protein s6;
PDBTitle: crystal structure of 30s ribosomal protein s from bacillus anthracis
12c3j6vF_



99.9 28
PDB header:ribosome
Chain: F: PDB Molecule:28s ribosomal protein s6, mitochondrial;
PDBTitle: cryo-em structure of the small subunit of the mammalian mitochondrial2 ribosome
13c2kjwA_



99.7 41
PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s6;
PDBTitle: solution structure and backbone dynamics of the permutant p54-55
14c2zw2B_



56.0 13
PDB header:ligase
Chain: B: PDB Molecule:putative uncharacterized protein sts178;
PDBTitle: crystal structure of formylglycinamide ribonucleotide amidotransferase2 iii from sulfolobus tokodaii (stpurs)
15d1jjcb4



49.4 21
Fold:Ferredoxin-like
Superfamily:Anticodon-binding domain of PheRS
Family:Anticodon-binding domain of PheRS
16d1gtda_



37.1 14
Fold:PurS-like
Superfamily:PurS-like
Family:PurS subunit of FGAM synthetase
17d1phza1



32.2 7
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:Phenylalanine metabolism regulatory domain
18c2akwB_



29.8 21
PDB header:ligase
Chain: B: PDB Molecule:phenylalanyl-trna synthetase beta chain;
PDBTitle: crystal structure of t.thermophilus phenylalanyl-trna synthetase2 complexed with p-cl-phenylalanine
19d1sc6a3



29.6 18
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
20d1vq3a_



27.8 18
Fold:PurS-like
Superfamily:PurS-like
Family:PurS subunit of FGAM synthetase
21c2mdaB_



not modelled 26.5 9
PDB header:oxidoreductase
Chain: B: PDB Molecule:tyrosine 3-monooxygenase;
PDBTitle: the solution structure of the regulatory domain of tyrosine2 hydroxylase
22c5a13J_



not modelled 23.7 9
PDB header:oxidoreductase
Chain: J: PDB Molecule:chlorite dismutase;
PDBTitle: crystal structure of chlorite dismutase from2 magnetospirillum sp. in complex with thiocyanate
23d3b5ha2



not modelled 21.1 23
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
24c3fmbA_



not modelled 20.7 7
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:dimeric protein of unknown function and ferredoxin-like
PDBTitle: crystal structure of dimeric protein of unknown function and2 ferredoxin-like fold (yp_212648.1) from bacteroides fragilis nctc3 9343 at 1.85 a resolution
25c2ybvN_



not modelled 18.9 26
PDB header:lyase
Chain: N: PDB Molecule:ribulose bisphosphate carboxylase small subunit;
PDBTitle: structure of rubisco from thermosynechococcus elongatus
26d1uzhc1



not modelled 15.4 14
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
27d2nzca1



not modelled 15.1 9
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:TM1266-like
28c2yy8B_



not modelled 14.3 19
PDB header:transferase
Chain: B: PDB Molecule:upf0106 protein ph0461;
PDBTitle: crystal structure of archaeal trna-methylase for position2 56 (atrm56) from pyrococcus horikoshii, complexed with s-3 adenosyl-l-methionine
29d1svdm1



not modelled 13.9 10
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
30d1t4aa_



not modelled 13.9 15
Fold:PurS-like
Superfamily:PurS-like
Family:PurS subunit of FGAM synthetase
31d3bpda1



not modelled 12.9 33
Fold:Ferredoxin-like
Superfamily:MTH889-like
Family:MTH889-like
32d2raqa1



not modelled 12.8 22
Fold:Ferredoxin-like
Superfamily:MTH889-like
Family:MTH889-like
33c2yx5A_



not modelled 12.7 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0062 protein mj1593;
PDBTitle: crystal structure of methanocaldococcus jannaschii purs, one of the2 subunits of formylglycinamide ribonucleotide amidotransferase in the3 purine biosynthetic pathway
34c3nrbD_



not modelled 11.4 8
PDB header:hydrolase
Chain: D: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (puru,2 pp_1943) from pseudomonas putida kt2440 at 2.05 a resolution
35c2vxhF_



not modelled 11.2 17
PDB header:oxidoreductase
Chain: F: PDB Molecule:chlorite dismutase;
PDBTitle: the crystal structure of chlorite dismutase: a detox enzyme2 producing molecular oxygen
36c2x3dC_



not modelled 11.2 11
PDB header:unknown function
Chain: C: PDB Molecule:sso6206;
PDBTitle: crystal structure of sso6206 from sulfolobus solfataricus p2
37c5ekaA_



not modelled 10.8 14
PDB header:dna binding protein
Chain: A: PDB Molecule:dna-binding protein hu;
PDBTitle: hu dna-binding protein from thermus thermophilus
38c5fmsA_



not modelled 10.6 15
PDB header:transport protein
Chain: A: PDB Molecule:intraflagellar transport protein 52 homolog;
PDBTitle: mmift52 n-terminal domain
39d1a6fa_



not modelled 9.9 12
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:RNase P protein
40c5by3A_



not modelled 9.5 18
PDB header:sugar binding protein
Chain: A: PDB Molecule:btgh115a;
PDBTitle: a novel family gh115 4-o-methyl-alpha-glucuronidase, btgh115a, with2 specificity for decorated arabinogalactans
41c4qjuB_



not modelled 9.0 9
PDB header:dna binding protein/dna
Chain: B: PDB Molecule:dna-binding protein hu;
PDBTitle: crystal structure of dna-bound nucleoid associated protein, sav1473
42c4zmhA_



not modelled 9.0 30
PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a five-domain gh115 alpha-glucuronidase from the2 marine bacterium saccharophagus degradans 2-40t
43d3blhb1



not modelled 8.2 14
Fold:Cyclin-like
Superfamily:Cyclin-like
Family:Cyclin
44d1sqwa2



not modelled 8.2 17
Fold:Cystatin-like
Superfamily:Pre-PUA domain
Family:Nip7p homolog, N-terminal domain
45d1f9ya_



not modelled 8.1 23
Fold:Ferredoxin-like
Superfamily:6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
Family:6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
46c4c90B_



not modelled 8.0 30
PDB header:hydrolase
Chain: B: PDB Molecule:alpha-glucuronidase gh115;
PDBTitle: evidence that gh115 alpha-glucuronidase activity is2 dependent on conformational flexibility
47c5nv3P_



not modelled 7.6 15
PDB header:lyase
Chain: P: PDB Molecule:ribulose bisphosphate carboxylase small chain 1;
PDBTitle: structure of rubisco from rhodobacter sphaeroides in complex with cabp
48d1bwvs_



not modelled 7.3 13
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
49c2ljpA_



not modelled 7.3 9
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease p protein component;
PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for e.coli2 ribonuclease p protein
50c2rhsB_



not modelled 7.2 15
PDB header:ligase
Chain: B: PDB Molecule:phenylalanyl-trna synthetase beta chain;
PDBTitle: phers from staphylococcus haemolyticus- rational protein engineering2 and inhibitor studies
51c1y9jA_



not modelled 6.5 13
PDB header:protein transport
Chain: A: PDB Molecule:sec1 family domain containing protein 1;
PDBTitle: solution structure of the rat sly1 n-terminal domain
52c2jnvA_



not modelled 6.4 24
PDB header:metal transport
Chain: A: PDB Molecule:nifu-like protein 1, chloroplast;
PDBTitle: solution structure of c-terminal domain of nifu-like2 protein from oryza sativa
53d1huua_



not modelled 6.4 11
Fold:IHF-like DNA-binding proteins
Superfamily:IHF-like DNA-binding proteins
Family:Prokaryotic DNA-bending protein
54d1x4oa1



not modelled 6.3 13
Fold:Surp module (SWAP domain)
Superfamily:Surp module (SWAP domain)
Family:Surp module (SWAP domain)
55d2gtln1



not modelled 6.3 19
Fold:Streptavidin-like
Superfamily:Extracellular hemoglobin linker subunit, receptor domain
Family:Extracellular hemoglobin linker subunit, receptor domain
56c2yy3B_



not modelled 6.1 16
PDB header:translation
Chain: B: PDB Molecule:elongation factor 1-beta;
PDBTitle: crystal structure of translation elongation factor ef-1 beta from2 pyrococcus horikoshii
57c3fpjA_



not modelled 6.0 9
PDB header:biosynthetic protein, transferase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of e81q mutant of mtnas in complex with s-2 adenosylmethionine
58d1d6ta_



not modelled 5.8 15
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:RNase P protein
59c2z51A_



not modelled 5.7 29
PDB header:metal transport
Chain: A: PDB Molecule:nifu-like protein 2, chloroplast;
PDBTitle: crystal structure of arabidopsis cnfu involved in iron-sulfur cluster2 biosynthesis
60d2id1a1



not modelled 5.7 16
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Iojap/YbeB-like
61c6eznG_



not modelled 5.7 9
PDB header:membrane protein
Chain: G: PDB Molecule:dolichyl-diphosphooligosaccharide--protein
PDBTitle: cryo-em structure of the yeast oligosaccharyltransferase (ost) complex
62c1kcfB_



not modelled 5.6 17
PDB header:hydrolase
Chain: B: PDB Molecule:hypothetical 30.2 kd protein c25g10.02 in
PDBTitle: crystal structure of the yeast mitochondrial holliday2 junction resolvase, ydc2
63c5d4pA_



not modelled 5.6 33
PDB header:signaling protein
Chain: A: PDB Molecule:putative nitrogen regulatory protein p-ii glnb;
PDBTitle: structure of cpii bound to adp and bicarbonate, from thiomonas2 intermedia k12
64d2o3aa1



not modelled 5.5 15
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:AF0751-like
65c2np2B_



not modelled 5.4 12
PDB header:dna binding protein/dna
Chain: B: PDB Molecule:hbb;
PDBTitle: hbb-dna complex
66d1th5a1



not modelled 5.4 24
Fold:Alpha-lytic protease prodomain-like
Superfamily:Fe-S cluster assembly (FSCA) domain-like
Family:NifU C-terminal domain-like
67d1ir1s_



not modelled 5.3 17
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
68c4wcwB_



not modelled 5.3 22
PDB header:translation
Chain: B: PDB Molecule:ribosomal silencing factor rsfs;
PDBTitle: ribosomal silencing factor during starvation or stationary phase2 (rsfs) from mycobacterium tuberculosis

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