Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0056_(rplI)_59406_59864
DateTue Jul 23 14:50:08 BST 2019
Unique Job IDd3482b82df1ca112
SequenceMKLILTADVD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:61.690 Y:46.214 Z:43.072
Model (left) based on template c5o60H_
Top template information
PDB header:ribosome
Chain: H: PDB Molecule:50s ribosomal protein l9;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
Confidence and coverage
Confidence:100.0% Coverage: 99%
151 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5o60H_



100.0 73
PDB header:ribosome
Chain: H: PDB Molecule:50s ribosomal protein l9;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
2c2qbcH_



100.0 38
PDB header:ribosome
Chain: H: PDB Molecule:50s ribosomal protein l9;
PDBTitle: crystal structure of the bacterial ribosome from escherichia coli in2 complex with gentamicin. this file contains the 50s subunit of the3 second 70s ribosome, with gentamicin bound. the entire crystal4 structure contains two 70s ribosomes and is described in remark 400.
3c2b66I_



100.0 33
PDB header:ribosome
Chain: I: PDB Molecule:50s ribosomal protein l9;
PDBTitle: 50s ribosomal subunit from a crystal structure of release factor rf1,2 trnas and mrna bound to the ribosome. this file contains the 50s3 subunit from a crystal structure of release factor rf1, trnas and4 mrna bound to the ribosome and is described in remark 400
4c2v49I_



100.0 34
PDB header:ribosome
Chain: I: PDB Molecule:50s ribosomal protein l9;
PDBTitle: structure of the ribosome recycling factor bound to the2 thermus thermophilus 70s ribosome with mrna, asl-phe and3 trna-fmet (part 4 of 4). this file contains the 50s4 subunit of molecule 2.
5c3bboJ_



100.0 33
PDB header:ribosome
Chain: J: PDB Molecule:ribosomal protein l9;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
6d1diva1



99.9 30
Fold:Ribosomal protein L9 C-domain
Superfamily:Ribosomal protein L9 C-domain
Family:Ribosomal protein L9 C-domain
7d2gycf1



99.9 35
Fold:Ribosomal protein L9 C-domain
Superfamily:Ribosomal protein L9 C-domain
Family:Ribosomal protein L9 C-domain
8d2gycf2



99.8 44
Fold:MbtH/L9 domain-like
Superfamily:L9 N-domain-like
Family:Ribosomal protein L9 N-domain
9c4ce4I_



99.8 45
PDB header:ribosome
Chain: I: PDB Molecule:mrpl9;
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
10d2j01i2



99.8 45
Fold:MbtH/L9 domain-like
Superfamily:L9 N-domain-like
Family:Ribosomal protein L9 N-domain
11d2hbaa1



99.8 38
Fold:MbtH/L9 domain-like
Superfamily:L9 N-domain-like
Family:Ribosomal protein L9 N-domain
12d1cqua_



99.8 36
Fold:MbtH/L9 domain-like
Superfamily:L9 N-domain-like
Family:Ribosomal protein L9 N-domain
13c4v19I_



99.8 45
PDB header:ribosome
Chain: I: PDB Molecule:mitoribosomal protein bl9m, mrpl9;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
14c1pnyF_



99.8 45
PDB header:ribosome
Chain: F: PDB Molecule:50s ribosomal protein l9;
PDBTitle: crystal structure of the wild type ribosome from e. coli, 50s subunit2 of 70s ribosome. this file, 1pny, contains only molecules of the 50s3 ribosomal subunit. the 30s subunit is in the pdb file 1pnx.
15c1sm1F_



99.8 45
PDB header:ribosome/antibiotic
Chain: F: PDB Molecule:50s ribosomal protein l9;
PDBTitle: complex of the large ribosomal subunit from deinococcus radiodurans2 with quinupristin and dalfopristin
16d2j01i1



99.8 27
Fold:Ribosomal protein L9 C-domain
Superfamily:Ribosomal protein L9 C-domain
Family:Ribosomal protein L9 C-domain
17c1vw4G_



98.4 21
PDB header:ribosome
Chain: G: PDB Molecule:54s ribosomal protein l50, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
18c4qjty_



94.7 46
PDB header:ribosome
Chain: Y: PDB Molecule:
PDBTitle: crystal structure of elongation factor 4 (ef4/lepa) bound to the2 thermus thermophilus 70s ribosome, 30s subunit of the 70s ribosome
19d3ddja1



29.3 17
Fold:CBS-domain pair
Superfamily:CBS-domain pair
Family:CBS-domain pair
20c6nrwA_



29.0 12
PDB header:cell adhesion
Chain: A: PDB Molecule:dpr1;
PDBTitle: crystal structure of dpr1 ig1 bound to dip-eta ig1
21c3rbgB_



not modelled 27.1 18
PDB header:immune system
Chain: B: PDB Molecule:cytotoxic and regulatory t-cell molecule;
PDBTitle: crystal structure analysis of class-i mhc restricted t-cell associated2 molecule
22d2j9la1



not modelled 23.0 27
Fold:CBS-domain pair
Superfamily:CBS-domain pair
Family:CBS-domain pair
23d1vr9a3



not modelled 22.1 18
Fold:CBS-domain pair
Superfamily:CBS-domain pair
Family:CBS-domain pair
24c4fryA_



not modelled 21.8 27
PDB header:signaling protein
Chain: A: PDB Molecule:putative signal-transduction protein with cbs domains;
PDBTitle: the structure of a putative signal-transduction protein with cbs2 domains from burkholderia ambifaria mc40-6
25c2k50A_



not modelled 21.4 27
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:replication factor a related protein;
PDBTitle: solution nmr structure of the replication factor a related2 protein from methanobacterium thermoautotrophicum.3 northeast structural genomics target tr91a.
26c2pfiA_



not modelled 20.4 21
PDB header:transport protein
Chain: A: PDB Molecule:chloride channel protein clc-ka;
PDBTitle: crystal structure of the cytoplasmic domain of the human2 chloride channel clc-ka
27d1nksa_



not modelled 20.3 21
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
28c6cozB_



not modelled 20.2 32
PDB header:transport protein
Chain: B: PDB Molecule:chloride channel protein 1;
PDBTitle: human clc-1 chloride ion channel, c-terminal cytosolic domain
29c2afdA_



not modelled 20.1 16
PDB header:ligand binding protein
Chain: A: PDB Molecule:protein asl1650;
PDBTitle: solution structure of asl1650, an acyl carrier protein from anabaena2 sp. pcc 7120 with a variant phosphopantetheinylation-site sequence
30c2or7A_



not modelled 18.7 17
PDB header:immune system
Chain: A: PDB Molecule:t-cell immunoglobulin and mucin domain-
PDBTitle: tim-2
31c1vr9B_



not modelled 18.4 18
PDB header:unknown function
Chain: B: PDB Molecule:cbs domain protein/act domain protein;
PDBTitle: crystal structure of a cbs domain pair/act domain protein (tm0892)2 from thermotoga maritima at 1.70 a resolution
32c6nrrA_



not modelled 18.1 21
PDB header:cell adhesion
Chain: A: PDB Molecule:defective proboscis extension response 11, isoform b;
PDBTitle: crystal structure of dpr11 ig1 bound to dip-gamma ig+ig2
33d2yzia1



not modelled 17.4 18
Fold:CBS-domain pair
Superfamily:CBS-domain pair
Family:CBS-domain pair
34c3lqnA_



not modelled 16.3 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:cbs domain protein;
PDBTitle: crystal structure of cbs domain-containing protein of2 unknown function from bacillus anthracis str. ames ancestor
35c3ddjA_



not modelled 16.1 17
PDB header:amp-binding protein
Chain: A: PDB Molecule:cbs domain-containing protein;
PDBTitle: crystal structure of a cbs domain-containing protein in complex with2 amp (sso3205) from sulfolobus solfataricus at 1.80 a resolution
36d1q1va_



not modelled 16.0 17
Fold:Another 3-helical bundle
Superfamily:DEK C-terminal domain
Family:DEK C-terminal domain
37c4owxB_



not modelled 15.5 31
PDB header:dna binding protein/dna
Chain: B: PDB Molecule:soss complex subunit b1;
PDBTitle: structural basis of soss1 in complex with a 12nt ssdna
38c3m45D_



not modelled 15.4 15
PDB header:cell adhesion
Chain: D: PDB Molecule:cell adhesion molecule 2;
PDBTitle: crystal structure of ig1 domain of mouse syncam 2
39d1o50a3



not modelled 15.0 15
Fold:CBS-domain pair
Superfamily:CBS-domain pair
Family:CBS-domain pair
40c3kpbA_



not modelled 14.6 16
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein mj0100;
PDBTitle: crystal structure of the cbs domain pair of protein mj01002 in complex with 5 -methylthioadenosine and s-adenosyl-l-3 methionine.
41c3gbyA_



not modelled 13.7 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ct1051;
PDBTitle: crystal structure of a protein with unknown function ct10512 from chlorobium tepidum
42d1b8za_



not modelled 13.7 15
Fold:IHF-like DNA-binding proteins
Superfamily:IHF-like DNA-binding proteins
Family:Prokaryotic DNA-bending protein
43c2ouxB_



not modelled 13.7 23
PDB header:transport protein
Chain: B: PDB Molecule:magnesium transporter;
PDBTitle: crystal structure of the soluble part of a magnesium transporter
44c3e0eA_



not modelled 13.6 43
PDB header:replication
Chain: A: PDB Molecule:replication protein a;
PDBTitle: crystal structure of a domain of replication protein a from2 methanococcus maripaludis. northeast structural genomics3 targe mrr110b
45c1x37A_



not modelled 13.5 38
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent protease la 1;
PDBTitle: structure of bacillus subtilis lon protease ssd domain
46c4gitA_



not modelled 13.4 50
PDB header:hydrolase
Chain: A: PDB Molecule:lon protease;
PDBTitle: crystal structure of alpha sub-domain of lon protease from2 brevibacillus thermoruber
47d2ef7a1



not modelled 12.8 24
Fold:CBS-domain pair
Superfamily:CBS-domain pair
Family:CBS-domain pair
48d2d7oa1



not modelled 12.6 14
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
49c4nocA_



not modelled 12.5 14
PDB header:signaling protein
Chain: A: PDB Molecule:putative signal transduction protein with cbs domains;
PDBTitle: the crystal structure of a cbs domain-containing protein of unknown2 function from kribbella flavida dsm 17836.
50c2ds4A_



not modelled 12.4 19
PDB header:protein binding
Chain: A: PDB Molecule:tripartite motif protein 45;
PDBTitle: solution structure of the filamin domain from human2 tripartite motif protein 45
51c2emqA_



not modelled 12.4 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical conserved protein;
PDBTitle: hypothetical conserved protein (gk1048) from geobacillus kaustophilus
52d1m55a_



not modelled 12.3 35
Fold:Origin of replication-binding domain, RBD-like
Superfamily:Origin of replication-binding domain, RBD-like
Family:Replication protein Rep, nuclease domain
53c3ctuB_



not modelled 12.2 14
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:cbs domain protein;
PDBTitle: crystal structure of cbs domain protein from streptococcus2 pneumoniae tigr4
54d1j98a_



not modelled 12.1 18
Fold:LuxS/MPP-like metallohydrolase
Superfamily:LuxS/MPP-like metallohydrolase
Family:Autoinducer-2 production protein LuxS
55c2yvxD_



not modelled 12.1 24
PDB header:transport protein
Chain: D: PDB Molecule:mg2+ transporter mgte;
PDBTitle: crystal structure of magnesium transporter mgte
56c3rghA_



not modelled 12.0 15
PDB header:cell adhesion
Chain: A: PDB Molecule:filamin-a;
PDBTitle: structure of filamin a immunoglobulin-like repeat 10 from homo sapiens
57d1k1xa1



not modelled 11.6 43
Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Families 57/38 glycoside transferase middle domain
Family:4-alpha-glucanotransferase, domain 2
58d1j6xa_



not modelled 11.6 13
Fold:LuxS/MPP-like metallohydrolase
Superfamily:LuxS/MPP-like metallohydrolase
Family:Autoinducer-2 production protein LuxS
59d1qzma_



not modelled 11.5 38
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Extended AAA-ATPase domain
60c3nqrD_



not modelled 11.3 16
PDB header:transport protein
Chain: D: PDB Molecule:magnesium and cobalt efflux protein corc;
PDBTitle: a putative cbs domain-containing protein from salmonella typhimurium2 lt2
61d2d4za3



not modelled 11.3 34
Fold:CBS-domain pair
Superfamily:CBS-domain pair
Family:CBS-domain pair
62d1ixla_



not modelled 11.1 33
Fold:Thioesterase/thiol ester dehydrase-isomerase
Superfamily:Thioesterase/thiol ester dehydrase-isomerase
Family:PaaI/YdiI-like
63c2p9mD_



not modelled 11.1 24
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:hypothetical protein mj0922;
PDBTitle: crystal structure of conserved hypothetical protein mj0922 from2 methanocaldococcus jannaschii dsm 2661
64c2n5iA_



not modelled 11.0 12
PDB header:transport protein
Chain: A: PDB Molecule:peptidyl carrier protein pltl;
PDBTitle: pltl-pyrrolyl
65c6cxtA_



not modelled 10.7 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:alpha/beta hydrolase fold protein;
PDBTitle: crystal structure of fad-dependent dehydrogenase
66c2d4zB_



not modelled 10.6 34
PDB header:transport protein
Chain: B: PDB Molecule:chloride channel protein;
PDBTitle: crystal structure of the cytoplasmic domain of the chloride channel2 clc-0
67c3lhhA_



not modelled 10.6 24
PDB header:membrane protein
Chain: A: PDB Molecule:cbs domain protein;
PDBTitle: the crystal structure of cbs domain protein from shewanella2 oneidensis mr-1.
68c4bphA_



not modelled 10.5 9
PDB header:ligase
Chain: A: PDB Molecule:d-alanine--poly(phosphoribitol) ligase subunit 2;
PDBTitle: high resolution crystal structure of bacillus subtilis dltc
69d1o7ia_



not modelled 10.5 21
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Single strand DNA-binding domain, SSB
70c4ehxA_



not modelled 10.5 28
PDB header:transferase
Chain: A: PDB Molecule:tetraacyldisaccharide 4'-kinase;
PDBTitle: crystal structure of lpxk from aquifex aeolicus at 1.9 angstrom2 resolution
71c2yvzA_



not modelled 10.4 29
PDB header:transport protein
Chain: A: PDB Molecule:mg2+ transporter mgte;
PDBTitle: crystal structure of magnesium transporter mgte cytosolic domain,2 mg2+-free form
72c5iipA_



not modelled 10.4 31
PDB header:transport protein
Chain: A: PDB Molecule:glycine betaine/carnitine/choline abc transporter%2c atp-
PDBTitle: staphylococcus aureus opuca
73c6c4qA_



not modelled 10.4 21
PDB header:transport protein
Chain: A: PDB Molecule:polyketide synthase pks13;
PDBTitle: 1.16 angstrom resolution crystal structure of acyl carrier protein2 domain (residues 1-100) of polyketide synthase pks13 from3 mycobacterium tuberculosis
74c5dzoA_



not modelled 10.1 23
PDB header:immune system
Chain: A: PDB Molecule:hepatitis a virus cellular receptor 1;
PDBTitle: crystal structure of human t-cell immunoglobulin and mucin domain2 protein 1
75d2ooxe2



not modelled 10.0 26
Fold:CBS-domain pair
Superfamily:CBS-domain pair
Family:CBS-domain pair
76d1wlha1



not modelled 9.6 15
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
77c4h5sB_



not modelled 9.5 21
PDB header:cell adhesion
Chain: B: PDB Molecule:cell adhesion molecule 1;
PDBTitle: complex structure of necl-2 and crtam
78d2e9ia1



not modelled 9.4 23
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
79c1s1i0_



not modelled 9.4 42
PDB header:ribosome
Chain: 0: PDB Molecule:60s ribosomal protein l32;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1i, contains 60s subunit. the 40s4 ribosomal subunit is in file 1s1h.
80d1yava3



not modelled 9.4 22
Fold:CBS-domain pair
Superfamily:CBS-domain pair
Family:CBS-domain pair
81c2auvA_



not modelled 9.3 26
PDB header:oxidoreductase
Chain: A: PDB Molecule:potential nad-reducing hydrogenase subunit;
PDBTitle: solution structure of hndac : a thioredoxin-like [2fe-2s]2 ferredoxin involved in the nadp-reducing hydrogenase3 complex
82d1u2ca1



not modelled 9.3 22
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Cadherin-like
Family:Dystroglycan, N-terminal domain
83d1zfja4



not modelled 9.3 21
Fold:CBS-domain pair
Superfamily:CBS-domain pair
Family:CBS-domain pair
84d1nunb2



not modelled 9.2 15
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
85c2qstB_



not modelled 9.1 9
PDB header:cell adhesion
Chain: B: PDB Molecule:carcinoembryonic antigen-related cell adhesion
PDBTitle: crystal structure of the v39c mutant of the n-terminal2 domain of carcinoembryonic antigen (cea)
86c2ehtA_



not modelled 9.1 12
PDB header:lipid transport
Chain: A: PDB Molecule:acyl carrier protein;
PDBTitle: crystal structure of acyl carrier protein from aquifex aeolicus (form2 2)
87c3kxrA_



not modelled 8.9 31
PDB header:transport protein
Chain: A: PDB Molecule:magnesium transporter, putative;
PDBTitle: structure of the cystathionine beta-synthase pair domain of the2 putative mg2+ transporter so5017 from shewanella oneidensis mr-1.
88d2b78a1



not modelled 8.6 21
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:Hypothetical RNA methyltransferase domain (HRMD)
89c1z9mA_



not modelled 8.5 11
PDB header:cell adhesion
Chain: A: PDB Molecule:gapa225;
PDBTitle: crystal structure of nectin-like molecule-1 protein domain 1
90c2mf4A_



not modelled 8.4 19
PDB header:transferase
Chain: A: PDB Molecule:hybrid polyketide synthase-non ribosomal peptide
PDBTitle: 1h, 13c, 15n chemical shift assignments of streptomyces virginiae vira2 acp5a
91c2l7yA_



not modelled 8.4 16
PDB header:structural protein
Chain: A: PDB Molecule:putative endo-beta-n-acetylglucosaminidase;
PDBTitle: solution structure of a putative surface protein
92d2d7ma1



not modelled 8.4 8
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
93c2k75A_



not modelled 8.3 19
PDB header:dna binding protein
Chain: A: PDB Molecule:uncharacterized protein ta0387;
PDBTitle: solution nmr structure of the ob domain of ta0387 from2 thermoplasma acidophilum. northeast structural genomics3 consortium target tar80b.
94c3ns4A_



not modelled 8.3 56
PDB header:protein binding
Chain: A: PDB Molecule:vacuolar protein sorting-associated protein 53;
PDBTitle: structure of a c-terminal fragment of its vps53 subunit suggests2 similarity of garp to a family of tethering complexes
95d1dv5a_



not modelled 8.3 6
Fold:Acyl carrier protein-like
Superfamily:ACP-like
Family:apo-D-alanyl carrier protein
96c3fioB_



not modelled 8.2 16
PDB header:nucleotide binding protein, metal bindin
Chain: B: PDB Molecule:a cystathionine beta-synthase domain protein
PDBTitle: crystal structure of a fragment of a cystathionine beta-2 synthase domain protein fused to a zn-ribbon-like domain
97c4mz3A_



not modelled 8.1 20
PDB header:membrane protein
Chain: A: PDB Molecule:sodium channel subunit beta-4;
PDBTitle: crystal structure of the voltage-gated sodium channel beta 4 subunit2 extracellular domain, c131w mutant
98d1nq4a_



not modelled 8.1 23
Fold:Acyl carrier protein-like
Superfamily:ACP-like
Family:Acyl-carrier protein (ACP)
99c5abrB_



not modelled 8.1 15
PDB header:electron transport
Chain: B: PDB Molecule:ferredoxin, 2fe-2s;
PDBTitle: structure of fesi protein from azotobacter vinelandii

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