Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0060_(-)_63906_64964
DateTue Jul 23 14:50:09 BST 2019
Unique Job ID7f33f496484f97f9
SequenceMITYGSGDLL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:37.539 Y:43.214 Z:37.044
Model (left) based on template c5m3iB_
Top template information
PDB header:antitoxin
Chain: B: PDB Molecule:rnase iii inhibitor;
PDBTitle: macrodomain of mycobacterium tuberculosis darg
Confidence and coverage
Confidence:100.0% Coverage: 43%
150 residues ( 43% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5m3iB_



100.0 100
PDB header:antitoxin
Chain: B: PDB Molecule:rnase iii inhibitor;
PDBTitle: macrodomain of mycobacterium tuberculosis darg
2c5m31A_



100.0 56
PDB header:antitoxin
Chain: A: PDB Molecule:appr-1-p processing domain protein;
PDBTitle: macrodomain of thermus aquaticus darg
3c5e3bA_



100.0 25
PDB header:hydrolase
Chain: A: PDB Molecule:macrodomain protein;
PDBTitle: structure of macrodomain protein from streptomyces coelicolor
4c2eeeA_



100.0 24
PDB header:gene regulation
Chain: A: PDB Molecule:uncharacterized protein c6orf130;
PDBTitle: solution structure of the a1pp domain from human protein2 c6orf130
5d2fg1a1



100.0 22
Fold:Macro domain-like
Superfamily:Macro domain-like
Family:Macro domain
6c5iitC_



100.0 18
PDB header:inositol phosphate binding protein
Chain: C: PDB Molecule:vacuolar transporter chaperone 4,core histone macro-h2a.1;
PDBTitle: structure of spx domain of the yeast inorganic polyphophate polymerase2 vtc4 crystallized by carrier-driven crystallization in fusion with3 the macro domain of human histone macroh2a1.1
7c2dx6B_



100.0 23
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein ttha0132;
PDBTitle: crystal structure of conserved hypothetical protein, ttha0132 from2 thermus thermophilus hb8
8c3q71A_



100.0 17
PDB header:transferase
Chain: A: PDB Molecule:poly [adp-ribose] polymerase 14;
PDBTitle: human parp14 (artd8) - macro domain 2 in complex with adenosine-5-2 diphosphoribose
9c3vfqA_



100.0 19
PDB header:transferase
Chain: A: PDB Molecule:poly [adp-ribose] polymerase 14;
PDBTitle: human parp14 (artd8, bal2) - macro domains 1 and 2 in complex with2 adenosine-5-diphosphoribose
10d1zr5a1



100.0 16
Fold:Macro domain-like
Superfamily:Macro domain-like
Family:Macro domain
11c1zr5B_



100.0 16
PDB header:gene regulation
Chain: B: PDB Molecule:h2afy protein;
PDBTitle: crystal structure of the macro-domain of human core histone variant2 macroh2a1.2
12d1spva_



100.0 17
Fold:Macro domain-like
Superfamily:Macro domain-like
Family:Macro domain
13d1yd9a1



100.0 17
Fold:Macro domain-like
Superfamily:Macro domain-like
Family:Macro domain
14c2xd7B_



100.0 16
PDB header:dna binding protein
Chain: B: PDB Molecule:core histone macro-h2a.2;
PDBTitle: crystal structure of the macro domain of human core histone h2a
15c5l9kB_



100.0 16
PDB header:hydrolase
Chain: B: PDB Molecule:macrod-type macrodomain;
PDBTitle: oceanobacillus iheyensis macrodomain with adpr
16c3q6zA_



99.9 20
PDB header:transferase
Chain: A: PDB Molecule:poly [adp-ribose] polymerase 14;
PDBTitle: human parp14 (artd8)-macro domain 1 in complex with adenosine-5-2 diphosphoribose
17c5iq5A_



99.9 24
PDB header:viral protein
Chain: A: PDB Molecule:macro domain;
PDBTitle: nmr solution structure of mayaro virus macro domain
18c4iqyB_



99.9 17
PDB header:hydrolase
Chain: B: PDB Molecule:o-acetyl-adp-ribose deacetylase macrod2;
PDBTitle: crystal structure of the human protein-proximal adp-ribosyl-hydrolase2 macrod2
19d1vhua_



99.9 21
Fold:Macro domain-like
Superfamily:Macro domain-like
Family:Macro domain
20c5ailA_



99.9 19
PDB header:transcription
Chain: A: PDB Molecule:poly [adp-ribose] polymerase 9;
PDBTitle: human parp9 2nd macrodomain
21c2x47A_



not modelled 99.9 18
PDB header:signaling protein
Chain: A: PDB Molecule:macro domain-containing protein 1;
PDBTitle: crystal structure of human macrod1
22c3kh6A_



not modelled 99.9 20
PDB header:transferase
Chain: A: PDB Molecule:poly [adp-ribose] polymerase 15;
PDBTitle: human poly(adp-ribose) polymerase 15, macro domain 2 in complex with2 adenosine-5-diphosphoribose
23c4umlA_



not modelled 99.9 14
PDB header:signaling protein
Chain: A: PDB Molecule:ganglioside-induced differentiation-associated protein 2;
PDBTitle: crystal structure of ganglioside induced differentiation2 associated protein 2 (gdap2) macro domain
24c4ablA_



not modelled 99.9 18
PDB header:transferase
Chain: A: PDB Molecule:poly [adp-ribose] polymerase 14;
PDBTitle: human parp14 (artd8, bal2) - macro domain 3
25c3gpqA_



not modelled 99.9 24
PDB header:viral protein/rna
Chain: A: PDB Molecule:non-structural protein 3;
PDBTitle: crystal structure of macro domain of chikungunya virus in complex with2 rna
26c5fszA_



not modelled 99.9 12
PDB header:hydrolase
Chain: A: PDB Molecule:macrodomain;
PDBTitle: crystal structure of trypanosoma cruzi macrodomain
27c3ewqA_



not modelled 99.9 20
PDB header:hydrolase
Chain: A: PDB Molecule:non-structural protein 3;
PDBTitle: hcov-229e nsp3 adrp domain
28c5fsuA_



not modelled 99.9 12
PDB header:hydrolase
Chain: A: PDB Molecule:macrodomain;
PDBTitle: crystal structure of trypanosoma brucei macrodomain2 (crystal form 1)
29c3ejfA_



not modelled 99.9 17
PDB header:hydrolase
Chain: A: PDB Molecule:non-structural protein 3;
PDBTitle: crystal structure of ibv x-domain at ph 8.5
30c5kivA_



not modelled 99.9 15
PDB header:hydrolase
Chain: A: PDB Molecule:protein-adp-ribose hydrolase;
PDBTitle: crystal structure of saumacro (sav0325)
31c5dusA_



not modelled 99.9 19
PDB header:viral protein
Chain: A: PDB Molecule:orf1a;
PDBTitle: crystal structure of mers-cov macro domain in complex with adp-ribose
32c3ejgA_



not modelled 99.9 20
PDB header:hydrolase
Chain: A: PDB Molecule:non-structural protein 3;
PDBTitle: crystal structure of hcov-229e x-domain
33c3gqeA_



not modelled 99.9 20
PDB header:viral protein
Chain: A: PDB Molecule:non-structural protein 3;
PDBTitle: crystal structure of macro domain of venezuelan equine encephalitis2 virus
34c3ew5B_



not modelled 99.9 15
PDB header:rna binding protein
Chain: B: PDB Molecule:macro domain of non-structural protein 3;
PDBTitle: structure of the tetragonal crystal form of x (adrp) domain2 from fcov
35d2acfa1



not modelled 99.9 16
Fold:Macro domain-like
Superfamily:Macro domain-like
Family:Macro domain
36c2vriA_



not modelled 99.9 16
PDB header:viral protein
Chain: A: PDB Molecule:non-structural protein 3;
PDBTitle: structure of the nsp3 x-domain of human coronavirus nl63
37c4guaB_



not modelled 99.9 24
PDB header:hydrolase
Chain: B: PDB Molecule:non-structural polyprotein;
PDBTitle: alphavirus p23pro-zbd
38d1njra_



not modelled 99.7 21
Fold:Macro domain-like
Superfamily:Macro domain-like
Family:Macro domain
39c5lw0A_



not modelled 99.4 17
PDB header:adp-ribose-binding protein
Chain: A: PDB Molecule:basic helix-loop-helix, putative, expressed;
PDBTitle: oryza sativa apl macrodomain in complex with adp-ribose
40c3siiA_



not modelled 96.4 12
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:poly(adp-ribose) glycohydrolase;
PDBTitle: the x-ray crystal structure of poly(adp-ribose) glycohydrolase bound2 to the inhibitor adp-hpd from thermomonospora curvata
41c5zdcL_



not modelled 96.3 10
PDB header:hydrolase
Chain: L: PDB Molecule:poly adp-ribose glycohydrolase;
PDBTitle: crystal structure of poly(adp-ribose) glycohydrolase (parg) from2 deinococcus radiodurans in complex with adp-ribose (p32)
42d1gyta1



not modelled 91.3 11
Fold:Macro domain-like
Superfamily:Macro domain-like
Family:Leucine aminopeptidase (Aminopeptidase A), N-terminal domain
43c1gytG_



not modelled 73.5 11
PDB header:hydrolase
Chain: G: PDB Molecule:cytosol aminopeptidase;
PDBTitle: e. coli aminopeptidase a (pepa)
44c3l7wA_



not modelled 71.5 16
PDB header:transcription
Chain: A: PDB Molecule:putative uncharacterized protein smu.1704;
PDBTitle: the crystal structure of smu.1704 from streptococcus mutans ua159
45c6omeA_



not modelled 63.1 11
PDB header:hydrolase
Chain: A: PDB Molecule:probable cytosol aminopeptidase;
PDBTitle: crystal structure of a probable cytosol aminopeptidase (leucine2 aminopeptidase, lap) from chlamydia trachomatis d/uw-3/cx
46c3r0aB_



not modelled 62.3 10
PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcriptional regulator;
PDBTitle: possible transcriptional regulator from methanosarcina mazei go1 (gi2 21227196)
47c1vqwB_



not modelled 60.6 18
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein with similarity to flavin-containing
PDBTitle: crystal structure of a protein with similarity to flavin-2 containing monooxygenases and to mammalian dimethylalanine3 monooxygenases
48c5jlsA_



not modelled 54.7 11
PDB header:transcription
Chain: A: PDB Molecule:adhesin competence repressor;
PDBTitle: crystal structure of adhesin competence repressor (adcr) from2 streptococcus pyogenes (c-terminally his tagged)
49d2esha1



not modelled 54.0 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:PadR-like
50c3jruB_



not modelled 51.8 9
PDB header:hydrolase
Chain: B: PDB Molecule:probable cytosol aminopeptidase;
PDBTitle: crystal structure of leucyl aminopeptidase (pepa) from xoo0834,2 xanthomonas oryzae pv. oryzae kacc10331
51c3h8gC_



not modelled 48.9 13
PDB header:hydrolase
Chain: C: PDB Molecule:cytosol aminopeptidase;
PDBTitle: bestatin complex structure of leucine aminopeptidase from pseudomonas2 putida
52c5zhcA_



not modelled 48.2 15
PDB header:dna binding protein
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of the padr-family transcriptional regulator rv34882 of mycobacterium tuberculosis h37rv
53c5lw6A_



not modelled 47.3 10
PDB header:adp-ribose binding protein
Chain: A: PDB Molecule:ddb_g0293866;
PDBTitle: crystal structure of a se-met substituted dictyostelium discoideum2 adp-ribose binding macrodomain (residues 342-563) of ddb_g0293866
54c4hw0B_



not modelled 46.6 13
PDB header:dna binding protein
Chain: B: PDB Molecule:dna-binding protein sso10a-2;
PDBTitle: crystal structure of sso10a-2, a dna-binding protein from sulfolobus2 solfataricus
55d1r7ja_



not modelled 45.6 12
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Archaeal DNA-binding protein
56c5nmwA_



not modelled 44.9 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavin-containing monooxygenase;
PDBTitle: crystal structure of the pyrrolizidine alkaloid n-oxygenase from2 zonocerus variegatus in complex with fad
57c5x11G_



not modelled 44.7 14
PDB header:transcription/dna
Chain: G: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of bacillus subtilis padr in complex with operator2 dna
58c1fx7C_



not modelled 43.1 15
PDB header:signaling protein
Chain: C: PDB Molecule:iron-dependent repressor ider;
PDBTitle: crystal structure of the iron-dependent regulator (ider) from2 mycobacterium tuberculosis
59c5zqhA_



not modelled 42.2 12
PDB header:dna binding protein
Chain: A: PDB Molecule:padr family transcriptional regulator;
PDBTitle: crystal structure of streptococcus transcriptional regulator
60c5cviB_



not modelled 41.8 15
PDB header:transcription regulator
Chain: B: PDB Molecule:slor;
PDBTitle: structure of the manganese regulator slor
61c2qvoA_



not modelled 39.9 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein af_1382;
PDBTitle: crystal structure of af1382 from archaeoglobus fulgidus
62c1xmaA_



not modelled 39.8 7
PDB header:transcription
Chain: A: PDB Molecule:predicted transcriptional regulator;
PDBTitle: structure of a transcriptional regulator from clostridium thermocellum2 cth-833
63d1xmaa_



not modelled 39.8 7
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:PadR-like
64c3krbB_



not modelled 39.5 22
PDB header:oxidoreductase
Chain: B: PDB Molecule:aldose reductase;
PDBTitle: structure of aldose reductase from giardia lamblia at 1.75a resolution
65c5dymA_



not modelled 39.3 10
PDB header:dna binding protein
Chain: A: PDB Molecule:padr-family transcriptional regulator;
PDBTitle: crystal structure of a padr family transcription regulator from2 hypervirulent clostridium difficile r20291 - cdpadr_0991 to 1.893 angstrom resolution
66d1vp5a_



not modelled 39.1 23
Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
67c5h20A_



not modelled 35.0 12
PDB header:transcription regulator
Chain: A: PDB Molecule:putative padr-family transcriptional regulatory protein;
PDBTitle: x-ray structure of padr-like transcription factor from bacteroid2 fragilis
68d1ixra2



not modelled 34.8 32
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:DNA helicase RuvA subunit, N-terminal domain
69d1cuka3



not modelled 34.1 24
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:DNA helicase RuvA subunit, N-terminal domain
70c2e1nA_



not modelled 33.3 16
PDB header:circadian clock protein
Chain: A: PDB Molecule:pex;
PDBTitle: crystal structure of the cyanobacterium circadian clock modifier pex
71c2x4hA_



not modelled 33.3 10
PDB header:transcription
Chain: A: PDB Molecule:hypothetical protein sso2273;
PDBTitle: crystal structure of the hypothetical protein sso2273 from2 sulfolobus solfataricus
72c4q3mF_



not modelled 32.6 16
PDB header:hydrolase
Chain: F: PDB Molecule:mgs-m4;
PDBTitle: crystal structure of mgs-m4, an aldo-keto reductase enzyme from a2 medee basin deep-sea metagenome library
73c4esbA_



not modelled 31.9 15
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, padr family;
PDBTitle: crystal structure of padr-like transcriptional regulator (bc4206) from2 bacillus cereus strain atcc 14579
74c4otkA_



not modelled 31.0 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:mycobacterial enzyme rv2971;
PDBTitle: a structural characterization of the isoniazid mycobacterium2 tuberculosis drug target, rv2971, in its unliganded form
75c2bgsA_



not modelled 30.7 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:aldose reductase;
PDBTitle: holo aldose reductase from barley
76c1g3wA_



not modelled 30.3 15
PDB header:gene regulation
Chain: A: PDB Molecule:diphtheria toxin repressor;
PDBTitle: cd-cys102ser dtxr
77c6bsvB_



not modelled 30.2 11
PDB header:transferase
Chain: B: PDB Molecule:xyloglucan 6-xylosyltransferase 1;
PDBTitle: crystal structure of xyloglucan xylosyltransferase binary form
78c3f8fA_



not modelled 30.0 16
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, padr-like family;
PDBTitle: crystal structure of multidrug binding transcriptional regulator lmrr2 complexed with daunomycin
79d1bm9a_



not modelled 29.8 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Replication terminator protein (RTP)
80c3wbwA_



not modelled 29.7 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative 2,5-diketo-d-gluconic acid reductase;
PDBTitle: crystal structure of gox0644 in complex with nadph
81c5yf1A_



not modelled 29.2 50
PDB header:transferase
Chain: A: PDB Molecule:carnosine n-methyltransferase;
PDBTitle: crystal structure of carnmt1 bound to carnosine and sfg
82c3ri2B_



not modelled 28.3 13
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, padr-like family;
PDBTitle: crystal structure of padr family transcriptional regulator from2 eggerthella lenta dsm 2243
83d1mzra_



not modelled 26.7 21
Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
84c4ftbD_



not modelled 26.2 22
PDB header:virus
Chain: D: PDB Molecule:capsid protein gamma;
PDBTitle: crystal structure of the authentic flock house virus particle
85c1ixrB_



not modelled 25.4 32
PDB header:hydrolase
Chain: B: PDB Molecule:holliday junction dna helicase ruva;
PDBTitle: ruva-ruvb complex
86c1ixrA_



not modelled 25.3 32
PDB header:hydrolase
Chain: A: PDB Molecule:holliday junction dna helicase ruva;
PDBTitle: ruva-ruvb complex
87c3df8A_



not modelled 25.0 19
PDB header:transcription
Chain: A: PDB Molecule:possible hxlr family transcriptional factor;
PDBTitle: the crystal structure of a possible hxlr family transcriptional factor2 from thermoplasma volcanium gss1
88c2h5xA_



not modelled 24.3 28
PDB header:dna binding protein
Chain: A: PDB Molecule:holliday junction atp-dependent dna helicase ruva;
PDBTitle: ruva from mycobacterium tuberculosis
89d2ch5a2



not modelled 23.8 17
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
90d1uh6a_



not modelled 23.6 31
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
91d1bvsa3



not modelled 23.6 24
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:DNA helicase RuvA subunit, N-terminal domain
92d1hsja1



not modelled 23.1 9
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MarR-like transcriptional regulators
93d1z7ua1



not modelled 22.9 11
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:HxlR-like
94d1hw6a_



not modelled 22.8 19
Fold:TIM beta/alpha-barrel
Superfamily:NAD(P)-linked oxidoreductase
Family:Aldo-keto reductases (NADP)
95c3elkA_



not modelled 22.8 12
PDB header:transcription regulator
Chain: A: PDB Molecule:putative transcriptional regulator ta0346;
PDBTitle: crystal structure of putative transcriptional regulator ta0346 from2 thermoplasma acidophilum
96c1d8lA_



not modelled 22.6 24
PDB header:gene regulation
Chain: A: PDB Molecule:protein (holliday junction dna helicase ruva);
PDBTitle: e. coli holliday junction binding protein ruva nh2 region lacking2 domain iii
97c1hjpA_



not modelled 22.4 24
PDB header:dna recombination
Chain: A: PDB Molecule:ruva;
PDBTitle: holliday junction binding protein ruva from e. coli
98c3hhhA_



not modelled 21.9 14
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, padr family;
PDBTitle: crystal structure of transcriptional regulator, a member of padr2 family, from enterococcus faecalis v583
99c3m0zD_



not modelled 21.4 15
PDB header:lyase
Chain: D: PDB Molecule:putative aldolase;
PDBTitle: crystal structure of putative aldolase from klebsiella pneumoniae.
100c3muxB_



not modelled 20.7 10
PDB header:lyase
Chain: B: PDB Molecule:putative 4-hydroxy-2-oxoglutarate aldolase;
PDBTitle: the crystal structure of a putative 4-hydroxy-2-oxoglutarate aldolase2 from bacillus anthracis to 1.45a
101c3m6yA_



not modelled 20.6 10
PDB header:lyase
Chain: A: PDB Molecule:4-hydroxy-2-oxoglutarate aldolase;
PDBTitle: structure of 4-hydroxy-2-oxoglutarate aldolase from bacillus cereus at2 1.45 a resolution.
102c4ijrA_



not modelled 20.5 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:d-arabinose dehydrogenase [nad(p)+] heavy chain;
PDBTitle: crystal structure of saccharomyces cerevisiae arabinose dehydrogenase2 ara1 complexed with nadph

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