Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0061c_(RVBD0061c)_65009_65347
DateTue Jul 23 14:50:09 BST 2019
Unique Job ID9f3d59ea841b8b5f
SequenceMKLKFARLST ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:28.875 Y:38.633 Z:35.623
Model (left) based on template c2uurA_
Top template information
PDB header:structural protein
Chain: A: PDB Molecule:collagen alpha-1(ix) chain;
PDBTitle: n-terminal nc4 domain of collagen ix
Confidence and coverage
Confidence: 43.5% Coverage: 35%
39 residues ( 35% of your sequence) have been modelled with 43.5% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2uurA_
43.5 21
PDB header:structural protein
Chain: A: PDB Molecule:collagen alpha-1(ix) chain;
PDBTitle: n-terminal nc4 domain of collagen ix
2d1hn0a1
30.4 50
Fold:alpha/alpha toroid
Superfamily:Chondroitin AC/alginate lyase
Family:Hyaluronate lyase-like catalytic, N-terminal domain
3c2vtcB_
28.4 39
PDB header:hydrolase
Chain: B: PDB Molecule:cel61b;
PDBTitle: the structure of a glycoside hydrolase family 61 member,2 cel61b from the hypocrea jecorina.
4d1fjra_
26.3 19
Fold:Methuselah ectodomain
Superfamily:Methuselah ectodomain
Family:Methuselah ectodomain
5c5nltD_
23.5 67
PDB header:oxidoreductase
Chain: D: PDB Molecule:cvaa9a;
PDBTitle: cvaa9a
6c2q1fA_
23.4 33
PDB header:lyase
Chain: A: PDB Molecule:chondroitinase;
PDBTitle: crystal structure of chondroitin sulfate lyase abc from bacteroides2 thetaiotaomicron wal2926
7d1cwva5
23.2 43
Fold:C-type lectin-like
Superfamily:C-type lectin-like
Family:Invasin/intimin cell-adhesion fragment, C-terminal domain
8c5ufvE_
22.5 31
PDB header:hydrolase/oxidoreductase
Chain: E: PDB Molecule:glycoside hydrolase family 61 protein;
PDBTitle: crystal structure of a cellulose-active polysaccharide monooxygenase2 from m. thermophila (mtpmo3*)
9c1hn0A_
22.4 50
PDB header:lyase
Chain: A: PDB Molecule:chondroitin abc lyase i;
PDBTitle: crystal structure of chondroitin abc lyase i from proteus2 vulgaris at 1.9 angstroms resolution
10c5o2xA_
21.2 44
PDB header:oxidoreductase
Chain: A: PDB Molecule:glycoside hydrolase family 61;
PDBTitle: extended catalytic domain of h. jecorina lpmo9a a.k.a eg4
11d8i1ba_
20.9 35
Fold:beta-Trefoil
Superfamily:Cytokine
Family:Interleukin-1 (IL-1)
12c5fohA_
20.7 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:polysaccharide monooxygenase;
PDBTitle: crystal structure of the catalytic domain of nclpmo9a
13c1vi7A_
20.0 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein yigz;
PDBTitle: crystal structure of an hypothetical protein
14c3ejaB_
19.1 33
PDB header:unknown function
Chain: B: PDB Molecule:protein gh61e;
PDBTitle: magnesium-bound glycoside hydrolase 61 isoform e from thielavia2 terrestris
15c2yetB_
19.1 44
PDB header:hydrolase
Chain: B: PDB Molecule:gh61 isozyme a;
PDBTitle: thermoascus gh61 isozyme a
16d1a0ia1
18.8 60
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:DNA ligase/mRNA capping enzyme postcatalytic domain
17d1l2ha_
18.6 24
Fold:beta-Trefoil
Superfamily:Cytokine
Family:Interleukin-1 (IL-1)
18d2erfa1
18.5 25
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Laminin G-like module
19c4pkfB_
17.5 45
PDB header:lyase
Chain: B: PDB Molecule:tutg;
PDBTitle: benzylsuccinate synthase alpha-beta-gamma complex
20c2qieA_
17.4 56
PDB header:transferase
Chain: A: PDB Molecule:molybdopterin-converting factor subunit 2;
PDBTitle: staphylococcus aureus molybdopterin synthase in complex with precursor2 z
21d2hrva_
not modelled 17.0 35
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Viral cysteine protease of trypsin fold
22c4gafA_
not modelled 16.7 24
PDB header:signaling protein
Chain: A: PDB Molecule:ebi-005;
PDBTitle: crystal structure of ebi-005, a chimera of human il-1beta and il-1ra,2 bound to human interleukin-1 receptor type 1
23c4b5qA_
not modelled 16.5 27
PDB header:hydrolase
Chain: A: PDB Molecule:glycoside hydrolase family 61 protein d;
PDBTitle: the lytic polysaccharide monooxygenase gh61d structure from the2 basidiomycota fungus phanerochaete chrysosporium
24c5nnsB_
not modelled 16.3 31
PDB header:oxidoreductase
Chain: B: PDB Molecule:glycosyl hydrolase family 61, 2 protein;
PDBTitle: crystal structure of hilpmo9b
25c2cveA_
not modelled 15.4 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ttha1053;
PDBTitle: crystal structure of a conserved hypothetical protein tt1547 from2 thermus thermophilus hb8
26c4d7uB_
not modelled 14.8 32
PDB header:oxidoreductase
Chain: B: PDB Molecule:endoglucanase ii;
PDBTitle: the structure of the catalytic domain of nclpmo9c from the filamentous2 fungus neurospora crassa
27d1ilr1_
not modelled 14.1 35
Fold:beta-Trefoil
Superfamily:Cytokine
Family:Interleukin-1 (IL-1)
28d1uzdc1
not modelled 13.9 50
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
29c4eirB_
not modelled 13.8 30
PDB header:oxidoreductase
Chain: B: PDB Molecule:polysaccharide monooxygenase-2;
PDBTitle: structural basis for substrate targeting and catalysis by fungal2 polysaccharide monooxygenases (pmo-2)
30c4izeA_
not modelled 13.5 24
PDB header:signaling protein
Chain: A: PDB Molecule:interleukin-36 gamma;
PDBTitle: crystal structure of il-36gamma
31c2wryA_
not modelled 13.3 47
PDB header:immune system
Chain: A: PDB Molecule:interleukin-1beta;
PDBTitle: crystal structure of chicken cytokine interleukin 1 beta
32c1u5mA_
not modelled 12.8 42
PDB header:structural protein
Chain: A: PDB Molecule:alpha 1 type ii collagen isoform 1;
PDBTitle: structure of a chordin-like cysteine-rich repeat (vwc2 module) from collagen iia
33d1u5ma_
not modelled 12.8 42
Fold:FnI-like domain
Superfamily:FnI-like domain
Family:VWC domain
34c1z8rA_
not modelled 12.4 32
PDB header:hydrolase
Chain: A: PDB Molecule:coxsackievirus b4 polyprotein;
PDBTitle: 2a cysteine proteinase from human coxsackievirus b4 (strain2 jvb / benschoten / new york / 51)
35d1fm0e_
not modelled 12.3 44
Fold:alpha/beta-Hammerhead
Superfamily:Molybdopterin synthase subunit MoaE
Family:Molybdopterin synthase subunit MoaE
36c2fl8N_
not modelled 12.1 33
PDB header:virus/viral protein
Chain: N: PDB Molecule:baseplate structural protein gp10;
PDBTitle: fitting of the gp10 trimer structure into the cryoem map of the2 bacteriophage t4 baseplate in the hexagonal conformation.
37d8ruci_
not modelled 12.0 50
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
38c4e4fD_
not modelled 11.9 38
PDB header:isomerase
Chain: D: PDB Molecule:mannonate dehydratase;
PDBTitle: crystal structure of enolase pc1_0802 (target efi-502240) from2 pectobacterium carotovorum subsp. carotovorum pc1
39d1pgsa2
not modelled 11.9 29
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:PHM/PNGase F
Family:Glycosyl-asparaginase
40d1cw0a_
not modelled 11.5 40
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Very short patch repair (VSR) endonuclease
41c1cb8A_
not modelled 11.3 25
PDB header:lyase
Chain: A: PDB Molecule:protein (chondroitinase ac);
PDBTitle: chondroitinase ac lyase from flavobacterium heparinum
42c4maiA_
not modelled 11.2 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:aa11 lytic polysaccharide monooxygenase;
PDBTitle: structure of aspergillus oryzae aa11 lytic polysaccharide2 monooxygenase with cu(i)
43d1vsra_
not modelled 11.1 44
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Very short patch repair (VSR) endonuclease
44c6f2pA_
not modelled 10.9 33
PDB header:lyase
Chain: A: PDB Molecule:paenibacillus xanthan lyase;
PDBTitle: structure of paenibacillus xanthan lyase to 2.6 a resolution
45c2m5tA_
not modelled 10.9 60
PDB header:viral protein
Chain: A: PDB Molecule:human rhinovirus 2a proteinase;
PDBTitle: solution structure of the 2a proteinase from a common cold agent,2 human rhinovirus rv-c02, strain w12
46c2k7rA_
not modelled 10.8 24
PDB header:replication
Chain: A: PDB Molecule:primosomal protein dnai;
PDBTitle: n-terminal domain of the bacillus subtilis helicase-loading2 protein dnai
47d1hg7a_
not modelled 10.7 38
Fold:beta-clip
Superfamily:AFP III-like domain
Family:AFP III-like domain
48d1ej7s_
not modelled 10.5 50
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
49c1bdsA_
not modelled 10.4 45
PDB header:anti-hypertensive, anti-viral protein
Chain: A: PDB Molecule:bds-i;
PDBTitle: determination of the three-dimensional solution structure of the2 antihypertensive and antiviral protein bds-i from the sea anemone3 anemonia sulcata. a study using nuclear magnetic resonance and hybrid4 distance geometry-dynamical simulated annealing
50d1bdsa_
not modelled 10.4 45
Fold:Defensin-like
Superfamily:Defensin-like
Family:Defensin
51c3v3wA_
not modelled 10.4 44
PDB header:lyase
Chain: A: PDB Molecule:starvation sensing protein rspa;
PDBTitle: crystal structure of an enolase from the soil bacterium cellvibrio2 japonicus (target efi-502161) with bound mg and glycerol
52d1x4ka2
not modelled 10.3 67
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
53c1zoqA_
not modelled 10.3 24
PDB header:transcription/transferase
Chain: A: PDB Molecule:interferon regulatory factor 3;
PDBTitle: irf3-cbp complex
54c5bowA_
not modelled 9.8 24
PDB header:signaling protein
Chain: A: PDB Molecule:interleukin-1 family member 10;
PDBTitle: crystal structure of il-38
55d2ilaa_
not modelled 9.7 20
Fold:beta-Trefoil
Superfamily:Cytokine
Family:Interleukin-1 (IL-1)
56c2xfeA_
not modelled 8.9 25
PDB header:sugar binding protein
Chain: A: PDB Molecule:carbohydrate binding module;
PDBTitle: vcbm60 in complex with galactobiose
57c2l61A_
not modelled 8.7 67
PDB header:metal binding protein
Chain: A: PDB Molecule:ec protein i/ii;
PDBTitle: protein and metal cluster structure of the wheat metallothionein2 domain g-ec-1. the second part of the puzzle.
58c2l62A_
not modelled 8.6 67
PDB header:metal binding protein
Chain: A: PDB Molecule:ec protein i/ii;
PDBTitle: protein and metal cluster structure of the wheat metallothionein2 domain g-ec-1. the second part of the puzzle.
59c5aciA_
not modelled 8.5 41
PDB header:oxidoreductase
Chain: A: PDB Molecule:lytic polysaccharide monooxygenase;
PDBTitle: x-ray structure of lpmo
60c3pmmA_
not modelled 8.4 18
PDB header:hydrolase
Chain: A: PDB Molecule:putative cytoplasmic protein;
PDBTitle: the crystal structure of a possible member of gh105 family from2 klebsiella pneumoniae subsp. pneumoniae mgh 78578
61d1x1ia1
not modelled 8.4 33
Fold:alpha/alpha toroid
Superfamily:Chondroitin AC/alginate lyase
Family:Hyaluronate lyase-like catalytic, N-terminal domain
62d1qwta_
not modelled 8.4 24
Fold:SMAD/FHA domain
Superfamily:SMAD/FHA domain
Family:Interferon regulatory factor 3 (IRF3), transactivation domain
63c2h1eB_
not modelled 8.3 36
PDB header:hydrolase
Chain: B: PDB Molecule:chromo domain protein 1;
PDBTitle: tandem chromodomains of budding yeast chd1
64c6jbzC_
not modelled 8.1 33
PDB header:transferase
Chain: C: PDB Molecule:molybdenum cofactor biosynthesis protein e;
PDBTitle: structural analysis of molybdopterin synthases from two mycobacteria2 pathogens
65d1biha2
not modelled 8.1 33
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
66c2wdaA_
not modelled 7.8 33
PDB header:lyase
Chain: A: PDB Molecule:putative secreted lyase;
PDBTitle: the x-ray structure of the streptomyces coelicolor a32 chondroitin ac lyase in complex with chondroitin sulphate
67c1rwcA_
not modelled 7.5 27
PDB header:lyase
Chain: A: PDB Molecule:chondroitin ac lyase;
PDBTitle: crystal structure of arthrobacter aurescens chondroitin ac lyase
68d2oz4a3
not modelled 7.4 38
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
69c2wseE_
not modelled 7.4 22
PDB header:photosynthesis
Chain: E: PDB Molecule:photosystem i reaction center subunit iv a, chloroplastic;
PDBTitle: improved model of plant photosystem i
70c3k11A_
not modelled 7.4 27
PDB header:hydrolase
Chain: A: PDB Molecule:putative glycosyl hydrolase;
PDBTitle: crystal structure of putative glycosyl hydrolase (np_813087.1) from2 bacteroides thetaiotaomicron vpi-5482 at 1.80 a resolution
71d1m9ma_
not modelled 7.2 38
Fold:Nitric oxide (NO) synthase oxygenase domain
Superfamily:Nitric oxide (NO) synthase oxygenase domain
Family:Nitric oxide (NO) synthase oxygenase domain
72c4eisA_
not modelled 7.2 35
PDB header:oxidoreductase
Chain: A: PDB Molecule:polysaccharide monooxygenase-3;
PDBTitle: structural basis for substrate targeting and catalysis by fungal2 polysaccharide monooxygenases (pmo-3)
73c2mfpA_
not modelled 7.2 67
PDB header:metal binding protein
Chain: A: PDB Molecule:ec protein i/ii;
PDBTitle: solution structure of the circular g-domain analog from the wheat2 metallothionein ec-1
74d1cr5a1
not modelled 6.9 14
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Cdc48 N-terminal domain-like
75c4wtrA_
not modelled 6.8 33
PDB header:transferase
Chain: A: PDB Molecule:beta-1,3-glucanosyltransferase;
PDBTitle: active-site mutant of rhizomucor miehei beta-1,3-glucanosyltransferase2 in complex with laminaribiose
76c1x1jA_
not modelled 6.8 33
PDB header:lyase
Chain: A: PDB Molecule:xanthan lyase;
PDBTitle: crystal structure of xanthan lyase (n194a) with a substrate.
77c1za4A_
not modelled 6.8 24
PDB header:cell adhesion
Chain: A: PDB Molecule:thrombospondin 1;
PDBTitle: crystal structure of the thrombospondin-1 n-terminal domain2 in complex with arixtra
78d1opsa_
not modelled 6.7 33
Fold:beta-clip
Superfamily:AFP III-like domain
Family:AFP III-like domain
79c4s3nA_
not modelled 6.7 38
PDB header:transferase/rna
Chain: A: PDB Molecule:2'-5'-oligoadenylate synthase 3;
PDBTitle: crystal structure of human oas3 domain i in complex with dsrna
80c3fgrA_
not modelled 6.6 50
PDB header:hydrolase
Chain: A: PDB Molecule:putative phospholipase b-like 2 28 kda form;
PDBTitle: two chain form of the 66.3 kda protein at 1.8 angstroem
81c3dshA_
not modelled 6.3 24
PDB header:dna binding protein
Chain: A: PDB Molecule:interferon regulatory factor 5;
PDBTitle: crystal structure of dimeric interferon regulatory factor 5 (irf-5)2 transactivation domain
82d1g40a4
not modelled 6.3 15
Fold:Complement control module/SCR domain
Superfamily:Complement control module/SCR domain
Family:Complement control module/SCR domain
83c3mi6A_
not modelled 6.2 47
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: crystal structure of the alpha-galactosidase from lactobacillus2 brevis, northeast structural genomics consortium target lbr11.
84d1vj1a1
not modelled 6.0 25
Fold:GroES-like
Superfamily:GroES-like
Family:Alcohol dehydrogenase-like, N-terminal domain
85c6imfB_
not modelled 6.0 36
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:small serum protein 2;
PDBTitle: crystal structure of toxin/antitoxin complex
86d1mjta_
not modelled 5.8 19
Fold:Nitric oxide (NO) synthase oxygenase domain
Superfamily:Nitric oxide (NO) synthase oxygenase domain
Family:Nitric oxide (NO) synthase oxygenase domain
87d1ir1s_
not modelled 5.8 50
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
88d2cvea1
not modelled 5.7 27
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:YigZ N-terminal domain-like
89c2m7tA_
not modelled 5.7 50
PDB header:protein binding
Chain: A: PDB Molecule:cystine knot protein 2.5d;
PDBTitle: solution nmr structure of engineered cystine knot protein 2.5d
90c3fy4C_
not modelled 5.7 40
PDB header:lyase
Chain: C: PDB Molecule:6-4 photolyase;
PDBTitle: (6-4) photolyase crystal structure
91c5wlxA_
not modelled 5.7 60
PDB header:toxin
Chain: A: PDB Molecule:kappa-theraphotoxin-aa1a;
PDBTitle: solution structure of kappa-theraphotoxin-aa1a
92c6igzE_
not modelled 5.7 22
PDB header:plant protein
Chain: E: PDB Molecule:psae;
PDBTitle: structure of psi-lhci
93d1om4a_
not modelled 5.6 31
Fold:Nitric oxide (NO) synthase oxygenase domain
Superfamily:Nitric oxide (NO) synthase oxygenase domain
Family:Nitric oxide (NO) synthase oxygenase domain
94d2fiya1
not modelled 5.6 15
Fold:FdhE-like
Superfamily:FdhE-like
Family:FdhE-like
95c2n9oA_
not modelled 5.5 31
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase rnf126;
PDBTitle: solution structure of rnf126 n-terminal zinc finger domain
96d1uzhc1
not modelled 5.4 25
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
97d1k8kd2
not modelled 5.4 25
Fold:Secretion chaperone-like
Superfamily:Arp2/3 complex subunits
Family:Arp2/3 complex subunits
98c2iz3A_
not modelled 5.3 45
PDB header:inhibitor
Chain: A: PDB Molecule:beta-microseminoprotein;
PDBTitle: solution structure of human and porcine beta-2 microseminoprotein
99c4o9iX_
not modelled 5.3 36
PDB header:hydrolase
Chain: X: PDB Molecule:chromodomain-helicase-dna-binding protein 4;
PDBTitle: structure of chd4 double chromodomains depicts cooperative folding for2 dna binding

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