Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0064_(-)_68617_71556
DateTue Jul 23 14:50:09 BST 2019
Unique Job IDd0064d33143d8098
SequenceMETGSPGKRP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:63.983 Y:45.062 Z:58.580
Model (left) based on template c5gasN_
Top template information
PDB header:hydrolase
Chain: N: PDB Molecule:archaeal/vacuolar-type h+-atpase subunit i;
PDBTitle: thermus thermophilus v/a-atpase, conformation 2
Confidence and coverage
Confidence: 85.1% Coverage: 22%
219 residues ( 22% of your sequence) have been modelled with 85.1% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5gasN_
85.1 11
PDB header:hydrolase
Chain: N: PDB Molecule:archaeal/vacuolar-type h+-atpase subunit i;
PDBTitle: thermus thermophilus v/a-atpase, conformation 2
2c5z1fA_
72.2 15
PDB header:metal transport
Chain: A: PDB Molecule:csc1-like protein erd4;
PDBTitle: structure of atosca3.1 channel
3c5ir6B_
59.8 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:bd-type quinol oxidase subunit ii;
PDBTitle: the structure of bd oxidase from geobacillus thermodenitrificans
4d2bs2c1
51.3 14
Fold:Heme-binding four-helical bundle
Superfamily:Fumarate reductase respiratory complex transmembrane subunits
Family:Fumarate reductase respiratory complex cytochrome b subunit, FrdC
5c2jysA_
51.2 19
PDB header:hydrolase
Chain: A: PDB Molecule:protease/reverse transcriptase;
PDBTitle: solution structure of simian foamy virus (mac) protease
6c6oceB_
50.1 14
PDB header:transport protein
Chain: B: PDB Molecule:stress-gated cation channel 1.2;
PDBTitle: structure of the rice hyperosmolality-gated ion channel osca1.2
7c4witB_
49.5 11
PDB header:lipid transport
Chain: B: PDB Molecule:predicted protein;
PDBTitle: tmem16 lipid scramblase in crystal form 2
8c4g59D_
45.1 20
PDB header:immune system
Chain: D: PDB Molecule:m152 protein;
PDBTitle: crystal structure of the murine cytomegalovirus mhc-i homolog m1522 with ligand rae-1 gamma
9c6f0kC_
42.5 14
PDB header:membrane protein
Chain: C: PDB Molecule:polysulphide reductase nrfd;
PDBTitle: alternative complex iii
10d1njra_
42.4 15
Fold:Macro domain-like
Superfamily:Macro domain-like
Family:Macro domain
11c4zwjA_
41.8 12
PDB header:signaling protein
Chain: A: PDB Molecule:chimera protein of human rhodopsin, mouse s-arrestin, and
PDBTitle: crystal structure of rhodopsin bound to arrestin by femtosecond x-ray2 laser
12c1xl6B_
40.9 13
PDB header:metal transport
Chain: B: PDB Molecule:inward rectifier potassium channel;
PDBTitle: intermediate gating structure 2 of the inwardly rectifying k+ channel2 kirbac3.1
13c5woyA_
40.7 20
PDB header:transferase
Chain: A: PDB Molecule:phosphoenolpyruvate-protein phosphotransferase;
PDBTitle: nmr solution structure of enzyme i (neit) protein using two 4d-spectra
14c3wvfA_
37.8 16
PDB header:chaperone
Chain: A: PDB Molecule:membrane protein insertase yidc;
PDBTitle: crystal structure of yidc from escherichia coli
15c1ezaA_
36.3 24
PDB header:phosphotransferase
Chain: A: PDB Molecule:enzyme i;
PDBTitle: amino terminal domain of enzyme i from escherichia coli nmr,2 restrained regularized mean structure
16c4zwjC_
35.5 12
PDB header:signaling protein
Chain: C: PDB Molecule:chimera protein of human rhodopsin, mouse s-arrestin, and
PDBTitle: crystal structure of rhodopsin bound to arrestin by femtosecond x-ray2 laser
17c5x89A_
34.1 25
PDB header:hydrolase
Chain: A: PDB Molecule:enda-like protein,trna-splicing endonuclease;
PDBTitle: the x-ray crystal structure of subunit fusion rna splicing2 endonuclease from methanopyrus kandleri
18c6f1eA_
33.8 23
PDB header:immune system
Chain: A: PDB Molecule:interferon gamma;
PDBTitle: crystal structure of olive flounder [paralichthys olivaceus]2 interferon gamma at 2.3 angstrom resolution
19c3edyA_
32.6 27
PDB header:hydrolase
Chain: A: PDB Molecule:tripeptidyl-peptidase 1;
PDBTitle: crystal structure of the precursor form of human tripeptidyl-peptidase2 1
20c4exrA_
32.4 24
PDB header:unknown function
Chain: A: PDB Molecule:putative lipoprotein;
PDBTitle: crystal structure of a putative lipoprotein (cd1622) from clostridium2 difficile 630 at 1.85 a resolution
21d3eeqa2
not modelled 31.9 15
Fold:CbiG N-terminal domain-like
Superfamily:CbiG N-terminal domain-like
Family:CbiG N-terminal domain-like
22c2vvdA_
not modelled 30.3 16
PDB header:viral protein
Chain: A: PDB Molecule:spike protein p1;
PDBTitle: crystal structure of the receptor binding domain of the2 spike protein p1 from bacteriophage pm2
23c6mhvD_
not modelled 29.9 14
PDB header:transport protein
Chain: D: PDB Molecule:transient receptor potential cation channel subfamily v
PDBTitle: structure of human trpv3 in the presence of 2-apb in c4 symmetry
24c3rj2X_
not modelled 29.7 41
PDB header:protein binding
Chain: X: PDB Molecule:putative uncharacterized protein;
PDBTitle: structural and functional characterization of a novel histone h32 binding protein orf158l from the singapore grouper iridovirus (sgiv)
25c5t1oB_
not modelled 29.7 30
PDB header:transferase
Chain: B: PDB Molecule:phosphoenolpyruvate-protein phosphotransferase ptsp;
PDBTitle: solution-state nmr and saxs structural ensemble of npr (1-85) in2 complex with ein-ntr (170-424)
26c5my7A_
not modelled 29.4 16
PDB header:cell adhesion
Chain: A: PDB Molecule:adhesin;
PDBTitle: adhesin complex protein from neisseria meningitidis
27c4k4kA_
not modelled 29.1 17
PDB header:cell adhesion
Chain: A: PDB Molecule:putative cell adhesion protein;
PDBTitle: crystal structure of a putative cell adhesion protein (bacuni_00621)2 from bacteroides uniformis atcc 8492 at 1.67 a resolution
28c3eeqB_
not modelled 28.4 16
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative cobalamin biosynthesis protein g homolog;
PDBTitle: crystal structure of a putative cobalamin biosynthesis protein g2 homolog from sulfolobus solfataricus
29d1osya_
not modelled 28.2 20
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fungal immunomodulatory protein, FIP
Family:Fungal immunomodulatory protein, FIP
30c5cajB_
not modelled 27.0 17
PDB header:unknown function
Chain: B: PDB Molecule:upf0246 protein yaaa;
PDBTitle: crystal structure of e. coli yaaa, a member of the duf328/upf02462 family
31d1ouoa_
not modelled 25.4 21
Fold:His-Me finger endonucleases
Superfamily:His-Me finger endonucleases
Family:Endonuclease I
32c6btmC_
not modelled 25.3 10
PDB header:membrane protein
Chain: C: PDB Molecule:alternative complex iii subunit c;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
33c1y08A_
not modelled 25.1 26
PDB header:hydrolase
Chain: A: PDB Molecule:hypothetical protein spy0861;
PDBTitle: structure of the streptococcal endopeptidase ides, a novel2 cysteine proteinase with strict specificity for igg
34d1y08a_
not modelled 25.1 26
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:IgG-specific endopeptidase IdeS (Sib38)
35c2llhA_
not modelled 25.0 12
PDB header:dna binding protein, chaperone
Chain: A: PDB Molecule:nucleophosmin;
PDBTitle: nmr structure of npm1_c70
36c4zv4C_
not modelled 24.7 29
PDB header:translation
Chain: C: PDB Molecule:tse6;
PDBTitle: structure of tse6 in complex with ef-tu
37c1no1C_
not modelled 24.5 22
PDB header:replication
Chain: C: PDB Molecule:replisome organizer;
PDBTitle: structure of truncated variant of b.subtilis spp1 phage g39p helicase2 loader/inhibitor protein
38d1no1a_
not modelled 24.5 22
Fold:Replisome organizer (g39p helicase loader/inhibitor protein)
Superfamily:Replisome organizer (g39p helicase loader/inhibitor protein)
Family:Replisome organizer (g39p helicase loader/inhibitor protein)
39c4ce4l_
not modelled 24.1 21
PDB header:ribosome
Chain: L: PDB Molecule:
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
40c4drvA_
not modelled 24.0 18
PDB header:viral protein
Chain: A: PDB Molecule:outer capsid protein vp4;
PDBTitle: cell attachment protein vp8* of a human rotavirus specifically2 interacts with a-type histo-blood group antigen
41d1zyma2
not modelled 23.7 19
Fold:The "swivelling" beta/beta/alpha domain
Superfamily:Phosphohistidine domain
Family:N-terminal domain of enzyme I of the PEP:sugar phosphotransferase system
42c5boiA_
not modelled 23.3 33
PDB header:unknown function
Chain: A: PDB Molecule:germination protein ypeb;
PDBTitle: bacillus megaterium ypeb c-terminal domain
43c2qksA_
not modelled 23.2 13
PDB header:metal transport
Chain: A: PDB Molecule:kir3.1-prokaryotic kir channel chimera;
PDBTitle: crystal structure of a kir3.1-prokaryotic kir channel chimera
44c5nl2A_
not modelled 22.6 14
PDB header:membrane protein
Chain: A: PDB Molecule:anoctamin-1;
PDBTitle: cryo-em structure of the mtmem16a ion channel at 6.6 a resolution.
45d1kf6c_
not modelled 22.3 15
Fold:Heme-binding four-helical bundle
Superfamily:Fumarate reductase respiratory complex transmembrane subunits
Family:Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD)
46c3riaC_
not modelled 21.9 11
PDB header:transport protein/immune system
Chain: C: PDB Molecule:avermectin-sensitive glutamate-gated chloride channel glucl
PDBTitle: c. elegans glutamate-gated chloride channel (glucl) in complex with2 fab, ivermectin and iodide.
47d1sr3a_
not modelled 21.7 10
Fold:OB-fold
Superfamily:Heme chaperone CcmE
Family:Heme chaperone CcmE
48c2wnmA_
not modelled 21.6 50
PDB header:hydrolase
Chain: A: PDB Molecule:gene 2;
PDBTitle: solution structure of gp2
49c2lmcA_
not modelled 21.6 50
PDB header:transcription
Chain: A: PDB Molecule:bacterial rna polymerase inhibitor;
PDBTitle: structure of t7 transcription factor gp2-e. coli rnap jaw domain2 complex
50c3f3hA_
not modelled 21.6 20
PDB header:antitumor protein
Chain: A: PDB Molecule:immunomodulatory protein ling zhi-8;
PDBTitle: crystal structure and anti-tumor activity of lz-8 from the fungus2 ganoderma lucidium
51c3ajvA_
not modelled 21.2 20
PDB header:hydrolase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: splicing endonuclease from aeropyrum pernix
52c6nrb3_
not modelled 21.1 16
PDB header:chaperone
Chain: 3: PDB Molecule:prefoldin subunit 3;
PDBTitle: htric-hpfd class2
53d1vmja_
not modelled 21.1 26
Fold:YjbQ-like
Superfamily:YjbQ-like
Family:YjbQ-like
54c6nrb5_
not modelled 20.5 21
PDB header:chaperone
Chain: 5: PDB Molecule:prefoldin subunit 5;
PDBTitle: htric-hpfd class2
55c1qk1H_
not modelled 20.5 27
PDB header:transferase (creatine kinase)
Chain: H: PDB Molecule:creatine kinase, ubiquitous mitochondrial;
PDBTitle: crystal structure of human ubiquitous mitochondrial creatine kinase
56c2vveB_
not modelled 20.3 16
PDB header:viral protein
Chain: B: PDB Molecule:spike protein p1;
PDBTitle: crystal structure of the stem and receptor binding domain2 of the spike protein p1 from bacteriophage pm2
57c2yvxD_
not modelled 19.9 26
PDB header:transport protein
Chain: D: PDB Molecule:mg2+ transporter mgte;
PDBTitle: crystal structure of magnesium transporter mgte
58c3nqyA_
not modelled 19.7 31
PDB header:hydrolase
Chain: A: PDB Molecule:secreted metalloprotease mcp02;
PDBTitle: crystal structure of the autoprocessed complex of vibriolysin mcp-022 with a single point mutation e346a
59d1x3zb1
not modelled 19.4 19
Fold:XPC-binding domain
Superfamily:XPC-binding domain
Family:XPC-binding domain
60c5lw8A_
not modelled 19.3 22
PDB header:metal transport
Chain: A: PDB Molecule:protein tonb;
PDBTitle: nmr solution structure of helicobacter pylori tonb-ctd (residues 194-2 285)
61d3duea1
not modelled 19.1 15
Fold:BLIP-like
Superfamily:BT0923-like
Family:BT0923-like
62c4o9uB_
not modelled 19.0 20
PDB header:membrane protein
Chain: B: PDB Molecule:nad(p) transhydrogenase subunit beta;
PDBTitle: mechanism of transhydrogenase coupling proton translocation and2 hydride transfer
63c5x5sA_
not modelled 18.5 18
PDB header:hydrolase
Chain: A: PDB Molecule:amylase;
PDBTitle: ligand induced structure of amyp-sbd
64c3omsA_
not modelled 18.4 15
PDB header:transferase
Chain: A: PDB Molecule:phnb protein;
PDBTitle: putative 3-demethylubiquinone-9 3-methyltransferase, phnb protein,2 from bacillus cereus.
65c2w0cL_
not modelled 18.4 16
PDB header:virus
Chain: L: PDB Molecule:protein 2;
PDBTitle: x-ray structure of the entire lipid-containing bacteriophage pm2
66c1tujA_
not modelled 18.3 70
PDB header:transport protein
Chain: A: PDB Molecule:odorant binding protein asp2;
PDBTitle: solution structure of the honey bee general odorant binding2 protein asp2 in complex with trimethylsilyl-d4 propionate
67c3m1gC_
not modelled 18.3 21
PDB header:transferase
Chain: C: PDB Molecule:putative glutathione s-transferase;
PDBTitle: the structure of a putative glutathione s-transferase from2 corynebacterium glutamicum
68c5wc3S_
not modelled 18.0 23
PDB header:protein transport
Chain: S: PDB Molecule:spoiiiag, stage iii sporulation engulfment assemblyprotein;
PDBTitle: spoiiiag
69c6o7ua_
not modelled 17.9 12
PDB header:membrane protein
Chain: A: PDB Molecule:
PDBTitle: saccharomyces cerevisiae v-atpase stv1-vo
70c3rkoM_
not modelled 17.7 12
PDB header:oxidoreductase
Chain: M: PDB Molecule:nadh-quinone oxidoreductase subunit m;
PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution
71c5vrhA_
not modelled 17.6 16
PDB header:transferase
Chain: A: PDB Molecule:apolipoprotein n-acyltransferase;
PDBTitle: apolipoprotein n-acyltransferase c387s active site mutant
72d3elga1
not modelled 17.6 24
Fold:BLIP-like
Superfamily:BT0923-like
Family:BT0923-like
73c5yd1B_
not modelled 17.6 15
PDB header:metal transport
Chain: B: PDB Molecule:protein osca1;
PDBTitle: structure of atosca1.1 channel
74d1ru3a_
not modelled 17.1 29
Fold:Prismane protein-like
Superfamily:Prismane protein-like
Family:Acetyl-CoA synthase
75c1mwuA_
not modelled 17.1 23
PDB header:biosynthetic protein
Chain: A: PDB Molecule:penicillin-binding protein 2a;
PDBTitle: structure of methicillin acyl-penicillin binding protein 2a from2 methicillin resistant staphylococcus aureus strain 27r at 2.60 a3 resolution.
76c5ws4A_
not modelled 17.1 15
PDB header:membrane protein
Chain: A: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: crystal structure of tripartite-type abc transporter macb from2 acinetobacter baumannii
77c3eudE_
not modelled 17.1 17
PDB header:nuclear protein
Chain: E: PDB Molecule:protein shq1;
PDBTitle: structure of the cs domain of the essential h/aca rnp assembly protein2 shq1p
78d2bdra1
not modelled 17.0 19
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Ureidoglycolate hydrolase AllA
79c1b43A_
not modelled 16.9 14
PDB header:transferase
Chain: A: PDB Molecule:protein (fen-1);
PDBTitle: fen-1 from p. furiosus
80c5j0hA_
not modelled 16.9 41
PDB header:de novo protein
Chain: A: PDB Molecule:design construct 2l6hc3_13;
PDBTitle: de novo design of protein homo-oligomers with modular hydrogen bond2 network-mediated specificity
81d2fhzb1
not modelled 16.8 19
Fold:Colicin D/E5 nuclease domain
Superfamily:Colicin D/E5 nuclease domain
Family:Colicin E5 nuclease domain
82c6e1oA_
not modelled 16.6 12
PDB header:lipid transport
Chain: A: PDB Molecule:plasma membrane channel protein (aqy1), putative;
PDBTitle: aftmem16 reconstituted in nanodiscs in the presence of ca2+ and2 ceramide 24:0
83c2lx0A_
not modelled 16.6 53
PDB header:membrane protein
Chain: A: PDB Molecule:membrane fusion protein p14;
PDBTitle: arced helix (arch) nmr structure of the reovirus p14 fusion-associated2 small transmembrane (fast) protein transmembrane domain (tmd) in3 dodecyl phosphocholine (dpc) micelles
84c4ev6E_
not modelled 16.5 12
PDB header:metal transport
Chain: E: PDB Molecule:magnesium transport protein cora;
PDBTitle: the complete structure of cora magnesium transporter from2 methanocaldococcus jannaschii
85d1qk1a1
not modelled 16.5 34
Fold:Guanido kinase N-terminal domain
Superfamily:Guanido kinase N-terminal domain
Family:Guanido kinase N-terminal domain
86c4dsdA_
not modelled 16.2 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative periplasmic protein;
PDBTitle: crystal structure of a putative periplasmic protein (bacova_05534)2 from bacteroides ovatus atcc 8483 at 1.75 a resolution
87c3ez0D_
not modelled 16.0 27
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:uncharacterized protein with ferritin-like fold;
PDBTitle: crystal structure of protein of unknown function with ferritin-like2 fold (yp_832262.1) from arthrobacter sp. fb24 at 2.33 a resolution
88c1sazA_
not modelled 16.0 23
PDB header:transferase
Chain: A: PDB Molecule:probable butyrate kinase 2;
PDBTitle: membership in the askha superfamily: enzymological2 properties and crystal structure of butyrate kinase 2 from3 thermotoga maritima
89c4v1al_
not modelled 15.9 23
PDB header:ribosome
Chain: L: PDB Molecule:
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 22 of 2
90c4gx2B_
not modelled 15.8 25
PDB header:transport protein
Chain: B: PDB Molecule:trka domain protein;
PDBTitle: gsuk channel bound to nad
91c6eznF_
not modelled 15.5 19
PDB header:membrane protein
Chain: F: PDB Molecule:dolichyl-diphosphooligosaccharide--protein
PDBTitle: cryo-em structure of the yeast oligosaccharyltransferase (ost) complex
92d1k38a_
not modelled 15.5 24
Fold:beta-lactamase/transpeptidase-like
Superfamily:beta-lactamase/transpeptidase-like
Family:beta-Lactamase/D-ala carboxypeptidase
93c3ee6A_
not modelled 15.5 23
PDB header:hydrolase
Chain: A: PDB Molecule:tripeptidyl-peptidase 1;
PDBTitle: crystal structure analysis of tripeptidyl peptidase -i
94c1j6qA_
not modelled 15.3 13
PDB header:chaperone
Chain: A: PDB Molecule:cytochrome c maturation protein e;
PDBTitle: solution structure and characterization of the heme2 chaperone ccme
95d1j6qa_
not modelled 15.3 13
Fold:OB-fold
Superfamily:Heme chaperone CcmE
Family:Heme chaperone CcmE
96c1hymB_
not modelled 15.2 46
PDB header:hydrolase (serine proteinase)
Chain: B: PDB Molecule:hydrolyzed cucurbita maxima trypsin inhibitor v;
PDBTitle: hydrolyzed trypsin inhibitor (cmti-v, minimized average nmr structure)
97c5mrwG_
not modelled 15.1 30
PDB header:hydrolase
Chain: G: PDB Molecule:potassium-transporting atpase kdpc subunit;
PDBTitle: structure of the kdpfabc complex
98c2k8qA_
not modelled 15.0 17
PDB header:structural protein
Chain: A: PDB Molecule:protein shq1;
PDBTitle: nmr structure of shq1p n-terminal domain
99c5n9yB_
not modelled 14.9 4
PDB header:membrane protein
Chain: B: PDB Molecule:zinc transport protein zntb;
PDBTitle: the full-length structure of zntb

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below