Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0064A_(RVBD0064A)_71586_71825
DateTue Jul 23 14:50:09 BST 2019
Unique Job ID9c71d2c7b408b9af
SequenceMATIQVRDLP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:41.374 Y:42.273 Z:47.724
Model (left) based on template c2h1oH_
Top template information
PDB header:gene regulation/dna complex
Chain: H: PDB Molecule:trafficking protein a;
PDBTitle: structure of fitab bound to ir36 dna fragment
Confidence and coverage
Confidence: 95.1% Coverage: 76%
60 residues ( 76% of your sequence) have been modelled with 95.1% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2h1oH_



95.1 30
PDB header:gene regulation/dna complex
Chain: H: PDB Molecule:trafficking protein a;
PDBTitle: structure of fitab bound to ir36 dna fragment
2d2bsqe1



95.0 30
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Trafficking protein A-like
3c3h87D_



57.6 35
PDB header:toxin/antitoxin
Chain: D: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
4c5z1nA_



20.7 31
PDB header:protein binding
Chain: A: PDB Molecule:g-protein interacting protein 1;
PDBTitle: crystal structure of c terminal region of g-protein interacting2 protein 1 (gip1) from dictyostelium discoideum
5c4gehB_



16.8 61
PDB header:protein binding/transferase
Chain: B: PDB Molecule:serine/threonine-protein kinase mst4;
PDBTitle: crystal structure of mst4 dimerization domain complex with pdcd10
6c3w8hB_



15.5 61
PDB header:protein binding/transferase
Chain: B: PDB Molecule:serine/threonine-protein kinase 25;
PDBTitle: crystal structure of ccm3 in complex with the c-terminal regulatory2 domain of stk25
7d1mgra_



14.9 16
Fold:Microbial ribonucleases
Superfamily:Microbial ribonucleases
Family:Bacterial ribonucleases
8d1pyla_



14.5 21
Fold:Microbial ribonucleases
Superfamily:Microbial ribonucleases
Family:Bacterial ribonucleases
9c1b9qA_



12.1 41
PDB header:collagen facit xiv
Chain: A: PDB Molecule:protein (collagen alpha 1);
PDBTitle: nmr structure of heparin binding site of non collagenous2 domain i (nc1) of collagen facit xiv
10c1b9pA_



12.0 41
PDB header:collagen facit xiv
Chain: A: PDB Molecule:protein (collagen alpha 1);
PDBTitle: nmr structure of heparin binding site of non collagenous2 domain i (nc1) of collagen facit xiv
11c2k5jB_



11.9 17
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
12c2wttL_



11.5 41
PDB header:transcription
Chain: L: PDB Molecule:tumor protein p73;
PDBTitle: structure of the human p73 tetramerization domain (crystal form ii)
13d1ofux_



8.8 27
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Bacterial cell division inhibitor SulA
14c1oftC_



8.6 27
PDB header:bacterial cell division inhibitor
Chain: C: PDB Molecule:hypothetical protein pa3008;
PDBTitle: crystal structure of sula from pseudomonas aeruginosa
15c3zy1A_



8.2 35
PDB header:transcription
Chain: A: PDB Molecule:tumor protein 63;
PDBTitle: crystal structure of the human p63 tetramerization domain
16c4d1mE_



8.2 41
PDB header:transcription
Chain: E: PDB Molecule:cellular tumor antigen p53;
PDBTitle: tetramerization domain of zebrafish p53 (crystal form ii)
17c4a9zD_



7.7 35
PDB header:transcription
Chain: D: PDB Molecule:tumor protein 63;
PDBTitle: crystal structure of human p63 tetramerization domain
18d1ulza1



7.4 23
Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:BC C-terminal domain-like
19c5hobB_



7.4 41
PDB header:transcription
Chain: B: PDB Molecule:tumor protein p73;
PDBTitle: p73 homo-tetramerization domain mutant i
20d1w96c1



7.3 16
Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:BC C-terminal domain-like
21c1kjkA_



not modelled 7.0 50
PDB header:viral protein
Chain: A: PDB Molecule:integrase;
PDBTitle: solution structure of the lambda integrase amino-terminal2 domain
22d1z1ba1



not modelled 7.0 50
Fold:DNA-binding domain
Superfamily:DNA-binding domain
Family:lambda integrase N-terminal domain
23c2bw2A_



not modelled 6.8 32
PDB header:signaling protein
Chain: A: PDB Molecule:bypass of forespore c;
PDBTitle: bofc from bacillus subtilis
24c3kwvF_



not modelled 6.4 36
PDB header:toxin/protein transport
Chain: F: PDB Molecule:lethal factor;
PDBTitle: structural basis for the unfolding of anthrax lethal factor by2 protective antigen oligomers
25c4a9zC_



not modelled 6.3 35
PDB header:transcription
Chain: C: PDB Molecule:tumor protein 63;
PDBTitle: crystal structure of human p63 tetramerization domain
26d1j7na1



not modelled 5.7 36
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Anthrax toxin lethal factor, N- and C-terminal domains
27d1zl8a1



not modelled 5.5 20
Fold:L27 domain
Superfamily:L27 domain
Family:L27 domain
28c4uzxA_



not modelled 5.3 24
PDB header:rna binding protein
Chain: A: PDB Molecule:protein tho1;
PDBTitle: high-resolution nmr structures of the domains of saccharomyces2 cerevisiae tho1

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite