Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0065_(-)_71818_72219
DateTue Jul 23 14:50:09 BST 2019
Unique Job IDfac461e06ae6d4f2
SequenceVDECVVDAAA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:35.934 Y:47.798 Z:43.860
Model (left) based on template d1v8pa_
Top template information
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
Confidence and coverage
Confidence: 99.9% Coverage: 91%
121 residues ( 91% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1v8pa_



99.9 23
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
2c1v8pK_



99.9 23
PDB header:structural genomics, unknown function
Chain: K: PDB Molecule:hypothetical protein pae2754;
PDBTitle: crystal structure of pae2754 from pyrobaculum aerophilum
3d2fe1a1



99.9 28
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
4c2fe1A_



99.9 28
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein pae0151;
PDBTitle: crystal structure of pae0151 from pyrobaculum aerophilum
5c4xgrG_



99.8 14
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc30;
PDBTitle: crystal structure of addiction module from mycobacterial species
6c3tndC_



99.6 13
PDB header:translation, toxin
Chain: C: PDB Molecule:trna(fmet)-specific endonuclease vapc;
PDBTitle: crystal structure of shigella flexneri vapbc toxin-antitoxin complex
7c3zvkC_



99.6 16
PDB header:antitoxin/toxin/dna
Chain: C: PDB Molecule:toxin of toxin-antitoxin system;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
8c5l6mC_



99.6 15
PDB header:hydrolase
Chain: C: PDB Molecule:ribonuclease vapc;
PDBTitle: structure of caulobacter crescentus vapbc1 (vapb1deltac:vapc1 form)
9c5wzfB_



99.6 19
PDB header:hydrolase
Chain: B: PDB Molecule:23s rrna-specific endonuclease vapc20;
PDBTitle: crystal structure of mycobacterium tuberculosis vapc20 (rv2549c),2 sarcin-ricin loop cleaving toxin
10c3h87B_



99.5 15
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
11c5x3tD_



99.5 15
PDB header:antitoxin/toxin
Chain: D: PDB Molecule:ribonuclease vapc26;
PDBTitle: vapbc from mycobacterium tuberculosis
12c6nklA_



99.5 14
PDB header:antitoxin
Chain: A: PDB Molecule:ribonuclease vapc;
PDBTitle: 2.2 a resolution structure of vapbc-1 from nontypeable haemophilus2 influenzae
13c5sv2A_



99.5 18
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease vapc21;
PDBTitle: toxin vapc21 from mycobacterium tuberculosis
14c6a7vG_



99.5 18
PDB header:toxin/antitoxin
Chain: G: PDB Molecule:ribonuclease vapc11;
PDBTitle: crystal structure of mycobacterium tuberculosis vapbc11 toxin-2 antitoxin complex
15d2h1ca1



99.5 12
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
16c4chgC_



99.4 22
PDB header:toxin/antitoxin
Chain: C: PDB Molecule:probable ribonuclease vapc15;
PDBTitle: crystal structure of vapbc15 complex from mycobacterium tuberculosis
17c3dboB_



99.4 17
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a member of the vapbc family of toxin-antitoxin2 systems, vapbc-5, from mycobacterium tuberculosis
18d1y82a1



99.4 11
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
19d1v96a1



99.4 11
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
20c3i8oA_



99.0 15
PDB header:rna binding protein
Chain: A: PDB Molecule:kh domain-containing protein mj1533;
PDBTitle: a domain of a functionally unknown protein from2 methanocaldococcus jannaschii dsm 2661.
21c5ywwA_



not modelled 99.0 13
PDB header:hydrolase
Chain: A: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
22c5f4hF_



not modelled 98.9 13
PDB header:hydrolase
Chain: F: PDB Molecule:nucleotide binding protein pinc;
PDBTitle: archael ruvb-like holiday junction helicase
23c3ix7A_



not modelled 98.9 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ttha0540;
PDBTitle: crystal structure of a domain of functionally unknown protein from2 thermus thermophilus hb8
24d1w8ia_



not modelled 98.6 13
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
25d1o4wa_



not modelled 98.6 20
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:PIN domain
26c2lcqA_



not modelled 98.1 12
PDB header:metal binding protein
Chain: A: PDB Molecule:putative toxin vapc6;
PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii
27c2hwwC_



not modelled 97.2 18
PDB header:rna binding protein
Chain: C: PDB Molecule:telomerase-binding protein est1a;
PDBTitle: structure of pin domain of human smg6
28c5yz4A_



not modelled 97.0 22
PDB header:hydrolase
Chain: A: PDB Molecule:rrna-processing protein fcf1;
PDBTitle: structure of the pin domain endonuclease utp24
29c5jpqd_



not modelled 96.5 14
PDB header:ribosome
Chain: D: PDB Molecule:wd40 domain proteins;
PDBTitle: cryo-em structure of the 90s pre-ribosome
30c6g5iy_



not modelled 93.2 28
PDB header:ribosome
Chain: Y: PDB Molecule:40s ribosomal protein s24;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state r
31c2hwyB_



not modelled 86.8 20
PDB header:rna binding protein
Chain: B: PDB Molecule:protein smg5;
PDBTitle: structure of pin domain of human smg5.
32c4mj7B_



not modelled 86.1 12
PDB header:rna binding protein
Chain: B: PDB Molecule:rrna-processing protein utp23;
PDBTitle: crystal structure of the pin domain of saccharomyces cerevisiae utp23
33c2mdtA_



not modelled 85.1 15
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: a pilt n-terminus domain protein sso1118 from hyperthemophilic2 archaeon sulfolobus solfataricus p2
34c3v33A_



not modelled 79.7 26
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 conserved domain with zinc-finger motif
35c3v32B_



not modelled 74.6 26
PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease zc3h12a;
PDBTitle: crystal structure of mcpip1 n-terminal conserved domain
36d1cmwa2



not modelled 33.9 27
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
37d1xo1a2



not modelled 20.0 9
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
38d1hi9a_



not modelled 19.7 31
Fold:Dipeptide transport protein
Superfamily:Dipeptide transport protein
Family:Dipeptide transport protein
39d1vjla_



not modelled 18.0 22
Fold:Hypothetical protein TM0160
Superfamily:Hypothetical protein TM0160
Family:Hypothetical protein TM0160
40c3zddA_



not modelled 11.4 19
PDB header:hydrolase/dna
Chain: A: PDB Molecule:protein xni;
PDBTitle: structure of e. coli exoix in complex with the palindromic 5ov62 oligonucleotide and potassium
41c3j21P_



not modelled 10.0 8
PDB header:ribosome
Chain: P: PDB Molecule:50s ribosomal protein l18e;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
42c3izcR_



not modelled 9.6 19
PDB header:ribosome
Chain: R: PDB Molecule:60s ribosomal protein rpl18 (l18e);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
43c3t8iC_



not modelled 8.5 25
PDB header:hydrolase
Chain: C: PDB Molecule:purine nucleosidase, (iunh-2);
PDBTitle: structural analysis of thermostable s. solfataricus purine-specific2 nucleoside hydrolase
44c3zf7I_



not modelled 8.2 30
PDB header:ribosome
Chain: I: PDB Molecule:60s ribosomal protein l18;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
45d3eeqa1



not modelled 7.9 14
Fold:CobE/GbiG C-terminal domain-like
Superfamily:CobE/GbiG C-terminal domain-like
Family:CobE/GbiG C-terminal domain-like
46c3t8jA_



not modelled 7.4 13
PDB header:hydrolase
Chain: A: PDB Molecule:purine nucleosidase, (iunh-1);
PDBTitle: structural analysis of thermostable s. solfataricus pyrimidine-2 specific nucleoside hydrolase
47c3j39Q_



not modelled 7.4 19
PDB header:ribosome
Chain: Q: PDB Molecule:60s ribosomal protein l18;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
48c3iz5R_



not modelled 7.2 26
PDB header:ribosome
Chain: R: PDB Molecule:60s ribosomal protein l18 (l18e);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
49c6ba0D_



not modelled 7.0 13
PDB header:hydrolase
Chain: D: PDB Molecule:cytidine/uridine-specific hydrolase;
PDBTitle: pyrimidine-specific ribonucleoside hydrolase from gardnerella2 vaginalis
50c2c40B_



not modelled 7.0 0
PDB header:hydrolase
Chain: B: PDB Molecule:inosine-uridine preferring nucleoside hydrolase family
PDBTitle: crystal structure of inosine-uridine preferring nucleoside2 hydrolase from bacillus anthracis at 2.2a resolution
51c3j3bQ_



not modelled 6.9 22
PDB header:ribosome
Chain: Q: PDB Molecule:60s ribosomal protein l18;
PDBTitle: structure of the human 60s ribosomal proteins
52c2pb7A_



not modelled 6.6 22
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase uhrf1;
PDBTitle: crystal structure of the sra domain of the human uhrf12 protein
53c1s1iO_



not modelled 6.1 21
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l18;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1i, contains 60s subunit. the 40s4 ribosomal subunit is in file 1s1h.
54c4a1aN_



not modelled 5.7 30
PDB header:ribosome
Chain: N: PDB Molecule:rpl18;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3.
55c4nzpA_



not modelled 5.2 27
PDB header:ligase
Chain: A: PDB Molecule:argininosuccinate synthase;
PDBTitle: the crystal structure of argininosuccinate synthase from campylobacter2 jejuni subsp. jejuni nctc 11168

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