Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0069c_(sdaA)_76234_77619
DateTue Jul 23 14:50:10 BST 2019
Unique Job ID0154d1218c6018c1
SequenceMTISVFDLFT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:58.665 Y:66.790 Z:55.314
Model (left) based on template c4rqoB_
Top template information
PDB header:lyase
Chain: B: PDB Molecule:l-serine dehydratase;
PDBTitle: crystal structure of l-serine dehydratase from legionella pneumophila
Confidence and coverage
Confidence:100.0% Coverage: 96%
443 residues ( 96% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4rqoB_



100.0 50
PDB header:lyase
Chain: B: PDB Molecule:l-serine dehydratase;
PDBTitle: crystal structure of l-serine dehydratase from legionella pneumophila
2d2iafa1



100.0 42
Fold:FwdE/GAPDH domain-like
Superfamily:Serine metabolism enzymes domain
Family:Serine dehydratase beta chain-like
3c1ygyA_



99.7 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase;
PDBTitle: crystal structure of d-3-phosphoglycerate dehydrogenase from2 mycobacterium tuberculosis
4d1ygya4



99.4 20
Fold:FwdE/GAPDH domain-like
Superfamily:Serine metabolism enzymes domain
Family:SerA intervening domain-like
5d1szqa_



97.6 20
Fold:2-methylcitrate dehydratase PrpD
Superfamily:2-methylcitrate dehydratase PrpD
Family:2-methylcitrate dehydratase PrpD
6c2hp0A_



97.1 15
PDB header:isomerase
Chain: A: PDB Molecule:ids-epimerase;
PDBTitle: crystal structure of iminodisuccinate epimerase
7c5muxB_



96.5 17
PDB header:lyase
Chain: B: PDB Molecule:2-methylcitrate dehydratase;
PDBTitle: crystal structure of 2-methylcitrate dehydratase (mmge) from bacillus2 subtilis.
8c4zhjA_



48.9 22
PDB header:metal binding protein
Chain: A: PDB Molecule:mg-chelatase subunit chlh;
PDBTitle: crystal structure of the catalytic subunit of magnesium chelatase
9c2m2rA_



46.6 75
PDB header:unknown function
Chain: A: PDB Molecule:inhibitor cystine knot peptide mch-2;
PDBTitle: solution structure of mch-2: a novel inhibitor cystine knot peptide2 from momordica charantia
10c2w4eA_



45.6 14
PDB header:hydrolase
Chain: A: PDB Molecule:mutt/nudix family protein;
PDBTitle: structure of an n-terminally truncated nudix hydrolase2 dr2204 from deinococcus radiodurans
11c3u4gA_



36.9 33
PDB header:transferase
Chain: A: PDB Molecule:namn:dmb phosphoribosyltransferase;
PDBTitle: the structure of cobt from pyrococcus horikoshii
12c6b2zd_



35.5 24
PDB header:membrane protein
Chain: D: PDB Molecule:atp synthase subunit c, mitochondrial;
PDBTitle: cryo-em structure of the dimeric fo region of yeast mitochondrial atp2 synthase
13c3j9eD_



35.4 21
PDB header:viral protein
Chain: D: PDB Molecule:vp5;
PDBTitle: atomic structure of a non-enveloped virus reveals ph sensors for a2 coordinated process of cell entry
14c3s1sA_



30.5 35
PDB header:hydrolase, transferase
Chain: A: PDB Molecule:restriction endonuclease bpusi;
PDBTitle: characterization and crystal structure of the type iig restriction2 endonuclease bpusi
15d1ug2a_



30.0 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Myb/SANT domain
16c5oynB_



27.4 22
PDB header:lyase
Chain: B: PDB Molecule:dehydratase, ilvd/edd family;
PDBTitle: crystal structure of d-xylonate dehydratase in holo-form
17c5cagA_



26.1 27
PDB header:cell adhesion
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative adhesin (bacova_02677) from2 bacteroides ovatus atcc 8483 at 3.00 a resolution (psi community3 target, nakayama)
18d1no5a_



23.1 28
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Catalytic subunit of bi-partite nucleotidyltransferase
19d1rm6c1



22.8 12
Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
20d2i7pa1



22.5 25
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Fumble-like
21d1ffva1



not modelled 20.4 12
Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
22c2zfdB_



not modelled 20.1 25
PDB header:signaling protein/transferase
Chain: B: PDB Molecule:putative uncharacterized protein t20l15_90;
PDBTitle: the crystal structure of plant specific calcium binding protein atcbl22 in complex with the regulatory domain of atcipk14
23c2i7pA_



not modelled 20.0 25
PDB header:transferase
Chain: A: PDB Molecule:pantothenate kinase 3;
PDBTitle: crystal structure of human pank3 in complex with accoa
24d2i7na2



not modelled 19.1 21
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Fumble-like
25c1yy3A_



not modelled 18.7 57
PDB header:isomerase
Chain: A: PDB Molecule:s-adenosylmethionine:trna ribosyltransferase-
PDBTitle: structure of s-adenosylmethionine:trna ribosyltransferase-2 isomerase (quea)
26d1fh9a_



not modelled 18.1 8
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
27c5xzoA_



not modelled 18.0 20
PDB header:hydrolase
Chain: A: PDB Molecule:beta-xylanase;
PDBTitle: crystal structure of gh10 xylanase xyl10c from bispora. sp mey-1
28d1zxia1



not modelled 17.8 4
Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
29d1v97a1



not modelled 17.5 4
Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
30d1ncfb3



not modelled 16.2 40
Fold:TNF receptor-like
Superfamily:TNF receptor-like
Family:TNF receptor-like
31c5mrjA_



not modelled 16.2 15
PDB header:hydrolase
Chain: A: PDB Molecule:beta-xylanase;
PDBTitle: crystal structure of endo-1,4-beta-xylanase-like protein from2 acremonium chrysogenum
32d1t3qa1



not modelled 15.9 12
Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
33c1knyA_



not modelled 15.6 16
PDB header:transferase
Chain: A: PDB Molecule:kanamycin nucleotidyltransferase;
PDBTitle: kanamycin nucleotidyltransferase
34c6mbdD_



not modelled 15.4 28
PDB header:apoptosis
Chain: D: PDB Molecule:dm1;
PDBTitle: human mcl-1 in complex with the designed peptide dm1
35c6mbdC_



not modelled 15.4 28
PDB header:apoptosis
Chain: C: PDB Molecule:dm1;
PDBTitle: human mcl-1 in complex with the designed peptide dm1
36c4i7hA_



not modelled 15.2 7
PDB header:transcription
Chain: A: PDB Molecule:peroxide stress sensing regulator;
PDBTitle: structural basis for peroxide sensing and gene regulation by perr from2 streptococcus pyogenes
37c6fheA_



not modelled 15.0 8
PDB header:artificial enzyme
Chain: A: PDB Molecule:synthetic construct;
PDBTitle: highly active enzymes by automated modular backbone assembly and2 sequence design
38d1r85a_



not modelled 14.6 15
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
39d1uh6a_



not modelled 14.5 23
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
40c6hulB_



not modelled 14.0 19
PDB header:lyase
Chain: B: PDB Molecule:tryptophan synthase beta chain 1;
PDBTitle: sulfolobus solfataricus tryptophan synthase ab complex
41c1m94A_



not modelled 13.7 15
PDB header:structural genomics, signaling protein
Chain: A: PDB Molecule:protein ynr032c-a;
PDBTitle: solution structure of the yeast ubiquitin-like modifier2 protein hub1
42d1m94a_



not modelled 13.7 15
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
43d1n62a1



not modelled 13.7 4
Fold:CO dehydrogenase ISP C-domain like
Superfamily:CO dehydrogenase ISP C-domain like
Family:CO dehydrogenase ISP C-domain like
44c3wwnB_



not modelled 13.7 36
PDB header:metal binding protein/transferase
Chain: B: PDB Molecule:orff;
PDBTitle: crystal structure of lysz from thermus thermophilus complex with lysw
45d1v6ya_



not modelled 13.2 5
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
46c6ahtA_



not modelled 13.0 9
PDB header:transcription
Chain: A: PDB Molecule:conserved hypothetical plasmid protein;
PDBTitle: plasmid partitioning protein tubr from bacillus cereus
47d1jb0l_



not modelled 13.0 30
Fold:Photosystem I reaction center subunit XI, PsaL
Superfamily:Photosystem I reaction center subunit XI, PsaL
Family:Photosystem I reaction center subunit XI, PsaL
48d1v6wa2



not modelled 12.9 5
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
49c4upcA_



not modelled 12.7 20
PDB header:protein binding
Chain: A: PDB Molecule:nicastrin;
PDBTitle: structure of a extracellular domain
50c3vpbF_



not modelled 12.7 40
PDB header:ligase
Chain: F: PDB Molecule:alpha-aminoadipate carrier protein lysw;
PDBTitle: argx from sulfolobus tokodaii complexed with2 lysw/glu/adp/mg/zn/sulfate
51c3b9jI_



not modelled 12.7 4
PDB header:oxidoreductase
Chain: I: PDB Molecule:xanthine oxidase;
PDBTitle: structure of xanthine oxidase with 2-hydroxy-6-methylpurine
52c3ibqA_



not modelled 12.6 19
PDB header:transferase
Chain: A: PDB Molecule:pyridoxal kinase;
PDBTitle: crystal structure of pyridoxal kinase from lactobacillus plantarum in2 complex with atp
53d1tuxa_



not modelled 12.5 13
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
54d1v0la_



not modelled 12.4 10
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
55d1ylqa1



not modelled 12.4 30
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Catalytic subunit of bi-partite nucleotidyltransferase
56d1bg4a_



not modelled 12.4 13
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
57d1ta3b_



not modelled 12.3 18
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
58c5k3jA_



not modelled 12.2 38
PDB header:oxidoreductase
Chain: A: PDB Molecule:acyl-coenzyme a oxidase;
PDBTitle: crystals structure of acyl-coa oxidase-2 in caenorhabditis elegans2 bound with fad, ascaroside-coa, and atp
59c4xx6A_



not modelled 12.2 8
PDB header:hydrolase
Chain: A: PDB Molecule:beta-xylanase;
PDBTitle: crystal structure of a glycosylated endo-beta-1,4-xylanase (glycoside2 hydrolase family 10/gh10) enzyme from gloeophyllum trabeum
60d1exta3



not modelled 12.1 40
Fold:TNF receptor-like
Superfamily:TNF receptor-like
Family:TNF receptor-like
61c3smpA_



not modelled 12.0 21
PDB header:transferase
Chain: A: PDB Molecule:pantothenate kinase 1;
PDBTitle: monoclinic crystal structure of human pantothenate kinase 1 alpha
62c6fhfA_



not modelled 12.0 13
PDB header:artificial enzyme
Chain: A: PDB Molecule:design;
PDBTitle: highly active enzymes by automated modular backbone assembly and2 sequence design
63c4f8xA_



not modelled 11.6 8
PDB header:hydrolase
Chain: A: PDB Molecule:endo-1,4-beta-xylanase;
PDBTitle: penicillium canescens endo-1,4-beta-xylanase xyle
64c1rm6F_



not modelled 11.6 12
PDB header:oxidoreductase
Chain: F: PDB Molecule:4-hydroxybenzoyl-coa reductase gamma subunit;
PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica
65c5y6qA_



not modelled 11.5 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:aldehyde oxidase small subunit;
PDBTitle: crystal structure of an aldehyde oxidase from methylobacillus sp.2 ky4400
66c3dwgA_



not modelled 11.4 8
PDB header:transferase
Chain: A: PDB Molecule:cysteine synthase b;
PDBTitle: crystal structure of a sulfur carrier protein complex found in the2 cysteine biosynthetic pathway of mycobacterium tuberculosis
67c2rkbE_



not modelled 11.3 10
PDB header:lyase
Chain: E: PDB Molecule:serine dehydratase-like;
PDBTitle: serine dehydratase like-1 from human cancer cells
68c2rffA_



not modelled 11.3 19
PDB header:transferase
Chain: A: PDB Molecule:putative nucleotidyltransferase;
PDBTitle: crystal structure of a putative nucleotidyltransferase (np_343093.1)2 from sulfolobus solfataricus at 1.40 a resolution
69c5ys9A_



not modelled 11.2 38
PDB header:oxidoreductase
Chain: A: PDB Molecule:acyl-coenzyme a oxidase 3;
PDBTitle: crystal structure of acyl-coa oxidase3 from yarrowia lipolytica
70c3w26A_



not modelled 11.0 13
PDB header:hydrolase
Chain: A: PDB Molecule:glycoside hydrolase family 10;
PDBTitle: the high-resolution crystal structure of tsxyla, intracellular2 xylanase from /thermoanaerobacterium saccharolyticum jw/sl-ys485/:3 the complex of the e146a mutant with xylotriose
71c5k3iH_



not modelled 10.9 44
PDB header:oxidoreductase
Chain: H: PDB Molecule:acyl-coenzyme a oxidase;
PDBTitle: crystal structure of acyl-coa oxidase-1 in caenorhabditis elegans2 complexed with fad and atp
72d1h72c1



not modelled 10.9 33
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:GHMP Kinase, N-terminal domain
73c5nqgB_



not modelled 10.8 63
PDB header:cell invasion
Chain: B: PDB Molecule:ron2;
PDBTitle: crystal structure of plasmodium vivax ama1 in complex with a 39 aa2 pvron2 peptide
74c4qysA_



not modelled 10.8 14
PDB header:lyase
Chain: A: PDB Molecule:tryptophan synthase beta chain 2;
PDBTitle: trpb2 enzymes
75d1knya2



not modelled 10.8 16
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Kanamycin nucleotidyltransferase (KNTase), N-terminal domain
76c2fglA_



not modelled 10.5 13
PDB header:hydrolase
Chain: A: PDB Molecule:alkaline thermostable endoxylanase;
PDBTitle: an alkali thermostable f/10 xylanase from alkalophilic bacillus sp.2 ng-27
77c1n60D_



not modelled 10.4 4
PDB header:oxidoreductase
Chain: D: PDB Molecule:carbon monoxide dehydrogenase small chain;
PDBTitle: crystal structure of the cu,mo-co dehydrogenase (codh); cyanide-2 inactivated form
78c2k9iB_



not modelled 10.4 18
PDB header:dna binding protein
Chain: B: PDB Molecule:uncharacterized protein orf56;
PDBTitle: nmr structure of plasmid copy control protein orf56 from sulfolobus2 islandicus
79c4pmyB_



not modelled 10.4 3
PDB header:hydrolase
Chain: B: PDB Molecule:xylanase;
PDBTitle: crystal structure of gh10 endo-b-1,4-xylanase (xynb) from xanthomonas2 axonopodis pv citri complexed with xylose
80d1i1wa_



not modelled 10.4 15
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
81c3eubJ_



not modelled 10.4 4
PDB header:oxidoreductase
Chain: J: PDB Molecule:xanthine dehydrogenase/oxidase;
PDBTitle: crystal structure of desulfo-xanthine oxidase with xanthine
82c6ju2A_



not modelled 10.3 35
PDB header:viral protein/rna
Chain: A: PDB Molecule:polymerase 3;
PDBTitle: structure of influenza d virus polymerase bound to crna promoter in2 class 1
83d1p0ra_



not modelled 10.0 26
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
84d1rypa_



not modelled 10.0 11
Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Proteasome subunits
85c1ffuA_



not modelled 9.9 12
PDB header:hydrolase
Chain: A: PDB Molecule:cuts, iron-sulfur protein of carbon monoxide
PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava which lacks the mo-pyranopterin moiety of the3 molybdenum cofactor
86c2lr8A_



not modelled 9.9 16
PDB header:apoptosis
Chain: A: PDB Molecule:casp8-associated protein 2;
PDBTitle: solution nmr structure of casp8-associated protein 2 from homo2 sapiens, northeast structural genomics consortium (nesg) target3 hr8150a
87c5y9dA_



not modelled 9.8 40
PDB header:oxidoreductase
Chain: A: PDB Molecule:acyl-coenzyme a oxidase 1;
PDBTitle: crystal structure of acyl-coa oxidase1 from yarrowia lipolytica
88c2ddhA_



not modelled 9.8 54
PDB header:oxidoreductase
Chain: A: PDB Molecule:acyl-coa oxidase;
PDBTitle: crystal structure of acyl-coa oxidase complexed with 3-oh-dodecanoate
89c4hx3H_



not modelled 9.7 50
PDB header:hydrolase/hydrolase inhibitor
Chain: H: PDB Molecule:neutral proteinase inhibitor scnpi;
PDBTitle: crystal structure of streptomyces caespitosus sermetstatin in complex2 with s. caespitosus snapalysin
90c5m0kB_



not modelled 9.6 10
PDB header:hydrolase
Chain: B: PDB Molecule:beta-xylanase;
PDBTitle: crystal structure of endo-1,4-beta-xylanase from cellulomonas2 flavigena
91c5oeiA_



not modelled 9.5 16
PDB header:transport protein
Chain: A: PDB Molecule:uncharacterized protein family upf0065:tat pathway signal;
PDBTitle: r. palustris rpa4515 with oxoadipate
92c2mpoA_



not modelled 9.4 67
PDB header:cell adhesion
Chain: A: PDB Molecule:mic2-associated protein;
PDBTitle: structural basis of toxoplasma gondii mic2-associated protein2 interaction with mic2
93c1us2A_



not modelled 9.3 10
PDB header:hydrolase
Chain: A: PDB Molecule:endo-beta-1,4-xylanase;
PDBTitle: xylanase10c (mutant e385a) from cellvibrio japonicus in complex with2 xylopentaose
94d1pbya1



not modelled 9.2 14
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
95c2zsjB_



not modelled 9.2 25
PDB header:lyase
Chain: B: PDB Molecule:threonine synthase;
PDBTitle: crystal structure of threonine synthase from aquifex aeolicus vf5
96c5tzbA_



not modelled 9.2 15
PDB header:hydrolase
Chain: A: PDB Molecule:d-aminopeptidase;
PDBTitle: burkholderia sp. beta-aminopeptidase
97c6q8nB_



not modelled 9.1 10
PDB header:hydrolase
Chain: B: PDB Molecule:beta-xylanase;
PDBTitle: gh10 endo-xylanase in complex with xylobiose epoxide inhibitor
98c3hrdH_



not modelled 9.1 12
PDB header:oxidoreductase
Chain: H: PDB Molecule:nicotinate dehydrogenase small fes subunit;
PDBTitle: crystal structure of nicotinate dehydrogenase
99d2nrha1



not modelled 9.1 6
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:CoaX-like

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