Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0072_(-)_80621_81670
DateTue Jul 23 14:50:10 BST 2019
Unique Job ID268cb09d808ebe73
SequenceMLFAALRDMQ ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:91.878 Y:82.784 Z:53.830
Model (left) based on template c5ws4A_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: crystal structure of tripartite-type abc transporter macb from2 acinetobacter baumannii
Confidence and coverage
Confidence:100.0% Coverage: 99%
347 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5ws4A_
100.0 20
PDB header:membrane protein
Chain: A: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: crystal structure of tripartite-type abc transporter macb from2 acinetobacter baumannii
2c5nikK_
100.0 18
PDB header:transport protein
Chain: K: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: structure of the macab-tolc abc-type tripartite multidrug efflux pump
3c5xu1M_
100.0 18
PDB header:transport protein
Chain: M: PDB Molecule:abc transporter permeae;
PDBTitle: structure of a non-canonical abc transporter from streptococcus2 pneumoniae r6
4c5lj7B_
100.0 18
PDB header:transport protein
Chain: B: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: structure of aggregatibacter actinomycetemcomitans macb bound to atp2 (p21)
5c5naaB_
98.0 16
PDB header:protein transport
Chain: B: PDB Molecule:lipoprotein-releasing system transmembrane protein lolc;
PDBTitle: lipoprotein-releasing system transmembrane protein lolc
6c5f9qA_
97.6 14
PDB header:membrane protein
Chain: A: PDB Molecule:macrolide export atp-binding/permease protein yknz;
PDBTitle: crystal structure of the extracellular domain of noncanonic abc-type2 transporter yknz from gram-positive bacteria
7c5udfB_
97.5 18
PDB header:protein transport
Chain: B: PDB Molecule:lipoprotein-releasing system transmembrane protein lole;
PDBTitle: structure of the n-terminal domain of lipoprotein-releasing system2 transmembrane protein lole from acinetobacter baumannii
8c3ftjA_
97.0 17
PDB header:hydrolase
Chain: A: PDB Molecule:macrolide export atp-binding/permease protein
PDBTitle: crystal structure of the periplasmic region of macb from2 actinobacillus actinomycetemcomitans
9c5c59F_
96.6 23
PDB header:hydrolase
Chain: F: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: crystal structure of the periplasmic region of macb from e. coli
10c5c59G_
94.2 19
PDB header:hydrolase
Chain: G: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: crystal structure of the periplasmic region of macb from e. coli
11c5x5yF_
90.1 20
PDB header:membrane protein
Chain: F: PDB Molecule:uncharacterized protein;
PDBTitle: a membrane protein complex
12c5l75F_
88.3 19
PDB header:transport protein
Chain: F: PDB Molecule:fig000988: predicted permease;
PDBTitle: a protein structure
13c5l75G_
85.6 20
PDB header:transport protein
Chain: G: PDB Molecule:fig000906: predicted permease;
PDBTitle: a protein structure
14c5x5yG_
85.6 18
PDB header:membrane protein
Chain: G: PDB Molecule:uncharacterized protein;
PDBTitle: a membrane protein complex
15c6mjpG_
85.3 19
PDB header:lipid transport
Chain: G: PDB Molecule:lps export abc transporter permease lptg;
PDBTitle: lptb(e163q)fgc from vibrio cholerae
16c6mjpF_
80.8 19
PDB header:lipid transport
Chain: F: PDB Molecule:fig000988: predicted permease;
PDBTitle: lptb(e163q)fgc from vibrio cholerae
17d1cola_
71.1 13
Fold:Toxins' membrane translocation domains
Superfamily:Colicin
Family:Colicin
18c1ciiA_
68.5 14
PDB header:transmembrane protein
Chain: A: PDB Molecule:colicin ia;
PDBTitle: colicin ia
19c3fewX_
53.7 11
PDB header:immune system
Chain: X: PDB Molecule:colicin s4;
PDBTitle: structure and function of colicin s4, a colicin with a duplicated2 receptor binding domain
20c6btmD_
53.6 9
PDB header:membrane protein
Chain: D: PDB Molecule:alternative complex iii subunit d;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
21d2yvxa3
not modelled 50.8 18
Fold:MgtE membrane domain-like
Superfamily:MgtE membrane domain-like
Family:MgtE membrane domain-like
22c2yvxD_
not modelled 45.7 13
PDB header:transport protein
Chain: D: PDB Molecule:mg2+ transporter mgte;
PDBTitle: crystal structure of magnesium transporter mgte
23c3ltiA_
not modelled 33.3 19
PDB header:transferase
Chain: A: PDB Molecule:dna-directed rna polymerase subunit beta;
PDBTitle: crystal structure of the escherichia coli rna polymerase beta subunit2 beta2-betai4 domains
24c4ymuC_
not modelled 32.1 11
PDB header:protein binding/transport protein
Chain: C: PDB Molecule:abc-type amino acid transport system, permease component;
PDBTitle: crystal structure of an amino acid abc transporter complex with2 arginines and atps
25c3is6A_
not modelled 26.9 17
PDB header:transport protein
Chain: A: PDB Molecule:putative permease protein, abc transporter;
PDBTitle: the crystal structure of a domain of a putative permease protein from2 porphyromonas gingivalis to 2a
26c5v2sA_
not modelled 26.0 15
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein b;
PDBTitle: crystal structure of glycoprotein b from herpes simplex virus type i
27c5xjyA_
not modelled 20.0 17
PDB header:transport protein
Chain: A: PDB Molecule:atp-binding cassette sub-family a member 1;
PDBTitle: cryo-em structure of human abca1
28c5a43B_
not modelled 18.6 21
PDB header:transport protein
Chain: B: PDB Molecule:putative fluoride ion transporter crcb;
PDBTitle: crystal structure of a dual topology fluoride ion channel.
29c2i88A_
not modelled 17.1 18
PDB header:membrane protein
Chain: A: PDB Molecule:colicin-e1;
PDBTitle: crystal structure of the channel-forming domain of colicin e1
30c4kbmA_
not modelled 15.5 25
PDB header:transferase/transcription
Chain: A: PDB Molecule:dna-directed rna polymerase subunit beta;
PDBTitle: structure of the mtb card/rnap beta subunit b1-b2 domains complex
31c4av3A_
not modelled 13.3 18
PDB header:hydrolase
Chain: A: PDB Molecule:k(+)-stimulated pyrophosphate-energized sodium pump;
PDBTitle: crystal structure of thermotoga maritima sodium pumping membrane2 integral pyrophosphatase with metal ions in active site
32d1a87a_
not modelled 13.2 14
Fold:Toxins' membrane translocation domains
Superfamily:Colicin
Family:Colicin
33c1a87A_
not modelled 13.2 14
PDB header:bacteriocin
Chain: A: PDB Molecule:colicin n;
PDBTitle: colicin n
34c2cwbA_
not modelled 12.9 4
PDB header:protein binding
Chain: A: PDB Molecule:chimera of immunoglobulin g binding protein g
PDBTitle: solution structure of the ubiquitin-associated domain of2 human bmsc-ubp and its complex with ubiquitin
35c5a40C_
not modelled 12.0 22
PDB header:transport protein
Chain: C: PDB Molecule:putative fluoride ion transporter crcb;
PDBTitle: crystal structure of a dual topology fluoride ion channel.
36c1wr1B_
not modelled 12.0 4
PDB header:signaling protein
Chain: B: PDB Molecule:ubiquitin-like protein dsk2;
PDBTitle: the complex sturcture of dsk2p uba with ubiquitin
37d2bwba1
not modelled 11.7 4
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
38d2dnaa1
not modelled 11.6 8
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
39c2dahA_
not modelled 11.6 8
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ubiquilin-3;
PDBTitle: solution structure of the c-terminal uba domain in the2 human ubiquilin 3
40d1ciia1
not modelled 11.5 14
Fold:Toxins' membrane translocation domains
Superfamily:Colicin
Family:Colicin
41c2dnaA_
not modelled 10.9 8
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:unnamed protein product;
PDBTitle: solution structure of rsgi ruh-056, a uba domain from mouse2 cdna
42c2v50A_
not modelled 10.9 16
PDB header:membrane protein
Chain: A: PDB Molecule:multidrug resistance protein mexb;
PDBTitle: the missing part of the bacterial mexab-oprm system: structural2 determination of the multidrug exporter mexb
43d1veja1
not modelled 10.9 16
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
44d1rh1a2
not modelled 10.7 14
Fold:Toxins' membrane translocation domains
Superfamily:Colicin
Family:Colicin
45d2daha1
not modelled 10.5 8
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
46c6f0kD_
not modelled 10.3 13
PDB header:membrane protein
Chain: D: PDB Molecule:actd;
PDBTitle: alternative complex iii
47c4r4eA_
not modelled 10.0 17
PDB header:transcription regulator/dna
Chain: A: PDB Molecule:hth-type transcriptional regulator glnr;
PDBTitle: structure of glnr-dna complex
48c5jefA_
not modelled 9.6 21
PDB header:transferase
Chain: A: PDB Molecule:nitrate/nitrite sensor protein narq;
PDBTitle: fragment of nitrate/nitrite sensor histidine kinase narq (wt) in2 asymmetric holo state
49c3hd7A_
not modelled 9.6 9
PDB header:exocytosis
Chain: A: PDB Molecule:vesicle-associated membrane protein 2;
PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1
50c2jy5A_
not modelled 9.4 12
PDB header:signaling protein
Chain: A: PDB Molecule:ubiquilin-1;
PDBTitle: nmr structure of ubiquilin 1 uba domain
51d2r6gg1
not modelled 9.3 16
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
52d2i76a1
not modelled 9.2 13
Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:ProC C-terminal domain-like
53d1q08a_
not modelled 8.8 29
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:DNA-binding N-terminal domain of transcription activators
54d2hyda2
not modelled 8.8 23
Fold:ABC transporter transmembrane region
Superfamily:ABC transporter transmembrane region
Family:ABC transporter transmembrane region
55c2ndjA_
not modelled 8.7 17
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e member 3;
PDBTitle: structural basis for kcne3 and estrogen modulation of the kcnq12 channel
56d1dv0a_
not modelled 8.6 17
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
57c6owsB_
not modelled 8.3 16
PDB header:membrane protein
Chain: B: PDB Molecule:efflux pump membrane transporter;
PDBTitle: cryo-em structure of an acinetobacter baumannii multidrug efflux pump
58c2hydB_
not modelled 7.9 23
PDB header:transport protein
Chain: B: PDB Molecule:abc transporter homolog;
PDBTitle: multidrug abc transporter sav1866
59c2k29A_
not modelled 7.8 11
PDB header:transcription
Chain: A: PDB Molecule:antitoxin relb;
PDBTitle: structure of the dbd domain of e. coli antitoxin relb
60c4yn3B_
not modelled 7.7 11
PDB header:hydrolase
Chain: B: PDB Molecule:cucumisin;
PDBTitle: crystal structure of cucumisin complex with pro-peptide
61c5mpyB_
not modelled 7.5 11
PDB header:plant protein
Chain: B: PDB Molecule:multiple organellar rna editing factor 9, chloroplastic;
PDBTitle: crystal structure of arabidopsis thaliana rna editing factor morf9
62c4fxeB_
not modelled 7.5 11
PDB header:toxin/toxin inhibitor
Chain: B: PDB Molecule:antitoxin relb;
PDBTitle: crystal structure of the intact e. coli relbe toxin-antitoxin complex
63c5mpwA_
not modelled 7.4 11
PDB header:plant protein
Chain: A: PDB Molecule:multiple organellar rna editing factor 1, mitochondrial;
PDBTitle: crystal structure of arabidopsis thaliana rna editing factor morf1
64c2k21A_
not modelled 7.2 0
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e
PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c
65c2jpcA_
not modelled 7.1 23
PDB header:dna binding protein
Chain: A: PDB Molecule:ssrb;
PDBTitle: ssrb dna binding protein
66c5ydgB_
not modelled 7.1 11
PDB header:rna binding protein
Chain: B: PDB Molecule:multiple organellar rna editing factor 2, chloroplastic;
PDBTitle: crystal structure of the arabidopsis thaliana chloroplast rna editing2 factors 2(morf2)
67c4r24B_
not modelled 7.0 37
PDB header:transcrption/dna
Chain: B: PDB Molecule:hth-type transcriptional regulator tnra;
PDBTitle: complete dissection of b. subtilis nitrogen homeostatic circuitry
68c5oy0m_
not modelled 6.7 11
PDB header:photosynthesis
Chain: M: PDB Molecule:photosystem i reaction center subunit xii;
PDBTitle: structure of synechocystis photosystem i trimer at 2.5a resolution
69c5oy0M_
not modelled 6.7 11
PDB header:photosynthesis
Chain: M: PDB Molecule:photosystem i reaction center subunit xii;
PDBTitle: structure of synechocystis photosystem i trimer at 2.5a resolution
70c6hqbM_
not modelled 6.7 11
PDB header:photosynthesis
Chain: M: PDB Molecule:photosystem i reaction center subunit xii;
PDBTitle: monomeric cyanobacterial photosystem i
71c5oy09_
not modelled 6.7 11
PDB header:photosynthesis
Chain: 9: PDB Molecule:photosystem i reaction center subunit xii;
PDBTitle: structure of synechocystis photosystem i trimer at 2.5a resolution
72c4l6v7_
not modelled 6.7 11
PDB header:electron transport
Chain: 7: PDB Molecule:photosystem i reaction center subunit xii;
PDBTitle: crystal structure of a virus like photosystem i from the2 cyanobacterium synechocystis pcc 6803
73c4l6vM_
not modelled 6.7 11
PDB header:electron transport
Chain: M: PDB Molecule:photosystem i reaction center subunit xii;
PDBTitle: crystal structure of a virus like photosystem i from the2 cyanobacterium synechocystis pcc 6803
74c5fgnA_
not modelled 6.7 13
PDB header:transferase,hydrolase
Chain: A: PDB Molecule:lipooligosaccharide phosphoethanolamine transferase a;
PDBTitle: integral membrane protein lipooligosaccharide phosphoethanolamine2 transferase a (epta) from neisseria meningitidis
75c3idwA_
not modelled 6.6 13
PDB header:endocytosis
Chain: A: PDB Molecule:actin cytoskeleton-regulatory complex protein sla1;
PDBTitle: crystal structure of sla1 homology domain 2
76d1scjb_
not modelled 6.5 10
Fold:Ferredoxin-like
Superfamily:Protease propeptides/inhibitors
Family:Subtilase propeptides/inhibitors
77c2kncA_
not modelled 6.5 13
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
78d1oqya2
not modelled 6.5 17
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
79c5gasN_
not modelled 6.4 10
PDB header:hydrolase
Chain: N: PDB Molecule:archaeal/vacuolar-type h+-atpase subunit i;
PDBTitle: thermus thermophilus v/a-atpase, conformation 2
80c2lorA_
not modelled 6.4 17
PDB header:membrane protein
Chain: A: PDB Molecule:transmembrane protein 141;
PDBTitle: backbone structure of human membrane protein tmem141
81c3vw4B_
not modelled 6.4 17
PDB header:dna binding protein/dna
Chain: B: PDB Molecule:rep;
PDBTitle: crystal structure of the dna-binding domain of cole2-p9 rep in complex2 with the replication origin
82c6csxA_
not modelled 6.3 15
PDB header:transport protein
Chain: A: PDB Molecule:multidrug efflux pump subunit acrb;
PDBTitle: single particles cryo-em structure of acrb d407a associated with lipid2 bilayer at 3.0 angstrom
83c2kr6A_
not modelled 6.2 14
PDB header:hydrolase
Chain: A: PDB Molecule:presenilin-1;
PDBTitle: solution structure of presenilin-1 ctf subunit
84c4ev6E_
not modelled 6.2 9
PDB header:metal transport
Chain: E: PDB Molecule:magnesium transport protein cora;
PDBTitle: the complete structure of cora magnesium transporter from2 methanocaldococcus jannaschii
85c3sztB_
not modelled 6.2 22
PDB header:transcription
Chain: B: PDB Molecule:quorum-sensing control repressor;
PDBTitle: quorum sensing control repressor, qscr, bound to n-3-oxo-dodecanoyl-l-2 homoserine lactone
86c2kncB_
not modelled 6.1 12
PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
87d1nosa_
not modelled 6.1 23
Fold:Nitric oxide (NO) synthase oxygenase domain
Superfamily:Nitric oxide (NO) synthase oxygenase domain
Family:Nitric oxide (NO) synthase oxygenase domain
88c4q2uM_
not modelled 6.1 7
PDB header:toxin/toxin repressor
Chain: M: PDB Molecule:antitoxin dinj;
PDBTitle: crystal structure of the e. coli dinj-yafq toxin-antitoxin complex
89c1y698_
not modelled 6.1 20
PDB header:ribosome
Chain: 8: PDB Molecule:ribosome-recycling factor;
PDB Fragment:unp residues 1-30 and 106-185; PDBTitle: rrf domain i in complex with the 50s ribosomal subunit from2 deinococcus radiodurans
90c2jnhA_
not modelled 6.0 14
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b;
PDBTitle: solution structure of the uba domain from cbl-b
91c5mg3D_
not modelled 6.0 12
PDB header:chaperone
Chain: D: PDB Molecule:protein translocase subunit secd;
PDBTitle: em fitted model of bacterial holo-translocon
92c3gp4B_
not modelled 6.0 13
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, merr family;
PDBTitle: crystal structure of putative merr family transcriptional regulator2 from listeria monocytogenes
93c2m0qA_
not modelled 5.9 6
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e member 2;
PDBTitle: solution nmr analysis of intact kcne2 in detergent micelles2 demonstrate a straight transmembrane helix
94d2e1za2
not modelled 5.8 7
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Acetokinase-like
95c5zazA_
not modelled 5.8 19
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin beta-2;
PDBTitle: solution structure of integrin b2 monomer tranmembrane domain in2 bicelle
96c5mkkB_
not modelled 5.7 4
PDB header:transport protein
Chain: B: PDB Molecule:multidrug resistance abc transporter atp-binding and
PDBTitle: crystal structure of the heterodimeric abc transporter tmrab, a2 homolog of the antigen translocation complex tap
97c4z3pA_
not modelled 5.7 20
PDB header:transport protein
Chain: A: PDB Molecule:putative drug/sodium antiporter;
PDBTitle: mate transporter clbm in complex with rb+
98d1wpga4
not modelled 5.7 8
Fold:Calcium ATPase, transmembrane domain M
Superfamily:Calcium ATPase, transmembrane domain M
Family:Calcium ATPase, transmembrane domain M
99c2krfB_
not modelled 5.7 17
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulatory protein coma;
PDBTitle: nmr solution structure of the dna binding domain of competence protein2 a

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