Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0076c_(-)_85180_85569
DateTue Jul 23 14:50:11 BST 2019
Unique Job ID7b3c7a2ac713d0ca
SequenceMPAVTTPSNH ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:12.256 Y:14.029 Z:26.880
Model (left) based on template c3pcqX_
Top template information
PDB header:photosynthesis
Chain: X: PDB Molecule:photosystem i 4.8k protein;
PDBTitle: femtosecond x-ray protein nanocrystallography
Confidence and coverage
Confidence: 19.6% Coverage: 14%
18 residues ( 14% of your sequence) have been modelled with 19.6% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3pcqX_
19.6 33
PDB header:photosynthesis
Chain: X: PDB Molecule:photosystem i 4.8k protein;
PDBTitle: femtosecond x-ray protein nanocrystallography
2c4fe1X_
19.4 35
PDB header:photosynthesis
Chain: X: PDB Molecule:photosystem i 4.8k protein;
PDBTitle: improving the accuracy of macromolecular structure refinement at 7 a2 resolution
3d1jb0x_
19.2 33
Fold:Single transmembrane helix
Superfamily:Subunit PsaX of photosystem I reaction centre
Family:Subunit PsaX of photosystem I reaction centre
4c1jb0X_
19.2 33
PDB header:photosynthesis
Chain: X: PDB Molecule:photosystem i subunit psax;
PDBTitle: crystal structure of photosystem i: a photosynthetic reaction center2 and core antenna system from cyanobacteria
5c2n4nA_
13.7 54
PDB header:de novo protein
Chain: A: PDB Molecule:designed beta sheet;
PDBTitle: nmr structure for a 3-stranded parallel beta-sheet
6c4hbzA_
12.5 20
PDB header:hydrolase, isomerase
Chain: A: PDB Molecule:putative phosphohistidine phosphatase, sixa;
PDBTitle: the structure of putative phosphohistidine phosphatase sixa from2 nakamurella multipartitia.
7c2yn0A_
11.7 20
PDB header:transcription
Chain: A: PDB Molecule:transcription factor tau 55 kda subunit;
PDBTitle: tau55 histidine phosphatase domain
8c3eozB_
11.3 14
PDB header:isomerase
Chain: B: PDB Molecule:putative phosphoglycerate mutase;
PDBTitle: crystal structure of phosphoglycerate mutase from plasmodium2 falciparum, pfd0660w
9c1vryA_
11.3 29
PDB header:membrane protein
Chain: A: PDB Molecule:glycine receptor alpha-1 chain;
PDBTitle: second and third transmembrane domains of the alpha-12 subunit of human glycine receptor
10c2zgtB_
11.1 15
PDB header:hydrolase
Chain: B: PDB Molecule:anti-tumor lectin;
PDBTitle: crystal structure of agrocybe aegerita lectin aal mutant2 f93g
11c2r0fA_
11.0 15
PDB header:sugar binding protein
Chain: A: PDB Molecule:cgl3 lectin;
PDBTitle: ligand free structure of fungal lectin cgl3
12c5wylB_
11.0 44
PDB header:ribosomal protein/nuclear protein
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of chaetomium thermophilum utp10 n-terminal domain2 in complex with utp17 c-terminal helices
13c4f77t_
10.8 17
PDB header:splicing
Chain: T: PDB Molecule:small nuclear ribonucleoprotein f;
PDBTitle: the 8s snrnp assembly intermediate
14c2rflB_
10.7 14
PDB header:hydrolase, isomerase
Chain: B: PDB Molecule:putative phosphohistidine phosphatase sixa;
PDBTitle: crystal structure of the putative phosphohistidine phosphatase sixa2 from agrobacterium tumefaciens
15d1xq9a_
10.4 10
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:Cofactor-dependent phosphoglycerate mutase
16c5wylD_
10.3 44
PDB header:ribosomal protein/nuclear protein
Chain: D: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of chaetomium thermophilum utp10 n-terminal domain2 in complex with utp17 c-terminal helices
17c2k42B_
10.2 38
PDB header:signaling protein
Chain: B: PDB Molecule:espfu;
PDBTitle: solution structure of the gtpase binding domain of wasp in2 complex with espfu, an ehec effector
18c2kv5A_
10.1 50
PDB header:toxin
Chain: A: PDB Molecule:putative uncharacterized protein rnai;
PDBTitle: solution structure of the par toxin fst in dpc micelles
19c3mxoB_
10.0 30
PDB header:hydrolase
Chain: B: PDB Molecule:serine/threonine-protein phosphatase pgam5, mitochondrial;
PDBTitle: crystal structure oh human phosphoglycerate mutase family member 52 (pgam5)
20c1q68A_
9.5 89
PDB header:membrane protein/transferase
Chain: A: PDB Molecule:t-cell surface glycoprotein cd4;
PDBTitle: solution structure of t-cell surface glycoprotein cd4 and2 proto-oncogene tyrosine-protein kinase lck fragments
21c1ujcA_
not modelled 9.4 20
PDB header:hydrolase
Chain: A: PDB Molecule:phosphohistidine phosphatase sixa;
PDBTitle: structure of the protein histidine phosphatase sixa2 complexed with tungstate
22d1ofcx2
not modelled 8.6 33
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:SLIDE domain
23d1ppjf_
not modelled 8.5 18
Fold:14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Superfamily:14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family:14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
24d2hhja1
not modelled 8.5 20
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:Cofactor-dependent phosphoglycerate mutase
25d1ulea_
not modelled 8.3 26
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Galectin (animal S-lectin)
26d3cx5g1
not modelled 8.3 23
Fold:14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Superfamily:14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family:14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
27d1riia_
not modelled 8.2 19
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:Cofactor-dependent phosphoglycerate mutase
28d1bccf_
not modelled 8.0 14
Fold:14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Superfamily:14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family:14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
29c6mquJ_
not modelled 7.9 63
PDB header:de novo protein
Chain: J: PDB Molecule:pl5, designed tm pentamer;
PDBTitle: pl5, synthetic transmembrane domain variant of human phospholamban
30c6mquE_
not modelled 7.9 63
PDB header:de novo protein
Chain: E: PDB Molecule:pl5, designed tm pentamer;
PDBTitle: pl5, synthetic transmembrane domain variant of human phospholamban
31c2lnhC_
not modelled 7.8 38
PDB header:signaling protein/protein binding
Chain: C: PDB Molecule:secreted effector protein espf(u);
PDBTitle: enterohaemorrhagic e. coli (ehec) exploits a tryptophan switch to2 hijack host f-actin assembly
32c6mquG_
not modelled 7.8 63
PDB header:de novo protein
Chain: G: PDB Molecule:pl5, designed tm pentamer;
PDBTitle: pl5, synthetic transmembrane domain variant of human phospholamban
33c6mquI_
not modelled 7.8 63
PDB header:de novo protein
Chain: I: PDB Molecule:pl5, designed tm pentamer;
PDBTitle: pl5, synthetic transmembrane domain variant of human phospholamban
34c6mquD_
not modelled 7.8 63
PDB header:de novo protein
Chain: D: PDB Molecule:pl5, designed tm pentamer;
PDBTitle: pl5, synthetic transmembrane domain variant of human phospholamban
35c6mquH_
not modelled 7.8 63
PDB header:de novo protein
Chain: H: PDB Molecule:pl5, designed tm pentamer;
PDBTitle: pl5, synthetic transmembrane domain variant of human phospholamban
36c6mquF_
not modelled 7.8 63
PDB header:de novo protein
Chain: F: PDB Molecule:pl5, designed tm pentamer;
PDBTitle: pl5, synthetic transmembrane domain variant of human phospholamban
37c6mquA_
not modelled 7.8 63
PDB header:de novo protein
Chain: A: PDB Molecule:pl5, designed tm pentamer;
PDBTitle: pl5, synthetic transmembrane domain variant of human phospholamban
38c6mquB_
not modelled 7.8 63
PDB header:de novo protein
Chain: B: PDB Molecule:pl5, designed tm pentamer;
PDBTitle: pl5, synthetic transmembrane domain variant of human phospholamban
39c6mquC_
not modelled 7.7 63
PDB header:de novo protein
Chain: C: PDB Molecule:pl5, designed tm pentamer;
PDBTitle: pl5, synthetic transmembrane domain variant of human phospholamban
40d1c0pa2
not modelled 7.4 57
Fold:FAD-linked reductases, C-terminal domain
Superfamily:FAD-linked reductases, C-terminal domain
Family:D-aminoacid oxidase-like
41c6gtrD_
not modelled 7.3 63
PDB header:transcription
Chain: D: PDB Molecule:duf1778 domain-containing protein;
PDBTitle: structure of the atat y144f mutant toxin bound to the c-terminus of2 the antitoxin atar and acetyl-coa
42c4nutB_
not modelled 6.7 50
PDB header:rna binding protein
Chain: B: PDB Molecule:ribosome assembly 1 protein;
PDBTitle: crystal structure of the complex between snu13p and the pep domain of2 rsa1
43c3ra3D_
not modelled 6.5 44
PDB header:de novo protein
Chain: D: PDB Molecule:p2f;
PDBTitle: crystal structure of a section of a de novo design gigadalton protein2 fibre
44c6c62D_
not modelled 6.5 38
PDB header:hydrolase
Chain: D: PDB Molecule:atzg;
PDBTitle: an unexpected vestigial protein complex reveals the evolutionary2 origins of an s-triazine catabolic enzyme.
45c3bbnM_
not modelled 6.3 100
PDB header:ribosome
Chain: M: PDB Molecule:ribosomal protein s13;
PDBTitle: homology model for the spinach chloroplast 30s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome.
46d1edqa1
not modelled 6.3 35
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
47c2yn2A_
not modelled 6.3 25
PDB header:hydrolase
Chain: A: PDB Molecule:uncharacterized protein ynl108c;
PDBTitle: huf protein - paralogue of the tau55 histidine phosphatase domain
48c3h87D_
not modelled 6.2 27
PDB header:toxin/antitoxin
Chain: D: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
49c3f2iD_
not modelled 6.2 10
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:alr0221 protein;
PDBTitle: crystal structure of the alr0221 protein from nostoc, northeast2 structural genomics consortium target nsr422.
50c2ee7A_
not modelled 6.2 20
PDB header:structural protein
Chain: A: PDB Molecule:sperm flagellar protein 1;
PDBTitle: solution structure of the ch domain from human sperm2 flagellar protein 1
51c4g5oG_
not modelled 6.1 50
PDB header:cell cycle/signaling protein
Chain: G: PDB Molecule:g-protein-signaling modulator 2;
PDBTitle: structure of lgn gl4/galphai3(q147l) complex
52c4embD_
not modelled 6.1 15
PDB header:isomerase
Chain: D: PDB Molecule:2,3-bisphosphoglycerate-dependent phosphoglycerate mutase;
PDBTitle: crystal structure of a phosphoglycerate mutase gpma from borrelia2 burgdorferi b31
53c5mmjm_
not modelled 6.1 80
PDB header:ribosome
Chain: M: PDB Molecule:
PDBTitle: structure of the small subunit of the chloroplast ribosome
54c4g5rG_
not modelled 6.1 50
PDB header:cell cycle/signaling protein
Chain: G: PDB Molecule:g-protein-signaling modulator 2;
PDBTitle: structure of lgn gl4/galphai3 complex
55c4g5rZ_
not modelled 6.0 50
PDB header:cell cycle/signaling protein
Chain: Z: PDB Molecule:g-protein-signaling modulator 2;
PDBTitle: structure of lgn gl4/galphai3 complex
56c4g5rE_
not modelled 6.0 50
PDB header:cell cycle/signaling protein
Chain: E: PDB Molecule:g-protein-signaling modulator 2;
PDBTitle: structure of lgn gl4/galphai3 complex
57c5o5jM_
not modelled 6.0 100
PDB header:ribosome
Chain: M: PDB Molecule:30s ribosomal protein s13;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
58c2m6iC_
not modelled 5.9 31
PDB header:membrane protein
Chain: C: PDB Molecule:full-length transmembrane domains of human glycine receptor
PDBTitle: putative pentameric open-channel structure of full-length2 transmembrane domains of human glycine receptor alpha1 subunit
59d1ryia2
not modelled 5.9 57
Fold:FAD-linked reductases, C-terminal domain
Superfamily:FAD-linked reductases, C-terminal domain
Family:D-aminoacid oxidase-like
60d3b2ua2
not modelled 5.9 40
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Growth factor receptor domain
Family:Growth factor receptor domain
61d1pyya3
not modelled 5.8 50
Fold:Penicillin binding protein dimerisation domain
Superfamily:Penicillin binding protein dimerisation domain
Family:Penicillin binding protein dimerisation domain
62d1e58a_
not modelled 5.7 15
Fold:Phosphoglycerate mutase-like
Superfamily:Phosphoglycerate mutase-like
Family:Cofactor-dependent phosphoglycerate mutase
63c3ra3B_
not modelled 5.7 44
PDB header:de novo protein
Chain: B: PDB Molecule:p2f;
PDBTitle: crystal structure of a section of a de novo design gigadalton protein2 fibre
64d1kifa2
not modelled 5.6 71
Fold:FAD-linked reductases, C-terminal domain
Superfamily:FAD-linked reductases, C-terminal domain
Family:D-aminoacid oxidase-like
65c4ui9E_
not modelled 5.6 36
PDB header:cell cycle
Chain: E: PDB Molecule:anaphase-promoting complex subunit 16;
PDBTitle: atomic structure of the human anaphase-promoting complex
66c5gg7A_
not modelled 5.5 33
PDB header:hydrolase
Chain: A: PDB Molecule:hydrolase, nudix family protein;
PDBTitle: crystal structure of mycobacterium smegmatis mutt1 in complex with 8-2 oxo-dgtp, 8-oxo-dgmp and pyrophosphate (i)
67d2gy9m1
not modelled 5.4 100
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Ribosomal protein S13
68c2y69Z_
not modelled 5.4 26
PDB header:electron transport
Chain: Z: PDB Molecule:cytochrome c oxidase polypeptide 8h;
PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular oxygen
69d2uubm1
not modelled 5.3 100
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Ribosomal protein S13
70c4g5qG_
not modelled 5.3 50
PDB header:cell cycle/signaling protein
Chain: G: PDB Molecule:g-protein-signaling modulator 2;
PDBTitle: structure of lgn gl4/galphai1 complex
71c4g5oE_
not modelled 5.2 50
PDB header:cell cycle/signaling protein
Chain: E: PDB Molecule:g-protein-signaling modulator 2;
PDBTitle: structure of lgn gl4/galphai3(q147l) complex
72c4g5qF_
not modelled 5.2 50
PDB header:cell cycle/signaling protein
Chain: F: PDB Molecule:g-protein-signaling modulator 2;
PDBTitle: structure of lgn gl4/galphai1 complex
73c4g5oF_
not modelled 5.2 50
PDB header:cell cycle/signaling protein
Chain: F: PDB Molecule:g-protein-signaling modulator 2;
PDBTitle: structure of lgn gl4/galphai3(q147l) complex
74c4g5rF_
not modelled 5.2 50
PDB header:cell cycle/signaling protein
Chain: F: PDB Molecule:g-protein-signaling modulator 2;
PDBTitle: structure of lgn gl4/galphai3 complex
75d1kxpd3
not modelled 5.2 21
Fold:Serum albumin-like
Superfamily:Serum albumin-like
Family:Serum albumin-like
76c4g5qE_
not modelled 5.2 50
PDB header:cell cycle/signaling protein
Chain: E: PDB Molecule:g-protein-signaling modulator 2;
PDBTitle: structure of lgn gl4/galphai1 complex

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below