Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0078A_(-)_87205_87798
DateTue Jul 23 14:50:11 BST 2019
Unique Job ID0e208abed9fa76f6
SequenceMNAVESTLRR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:38.042 Y:55.161 Z:38.234
Model (left) based on template c5uvdA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:nucleotidyltransferase-like protein;
PDBTitle: crystal structure of an antigenic nucleotidyltransferase-like protein2 from paracoccidioides brasiliensis
Confidence and coverage
Confidence: 99.8% Coverage: 92%
182 residues ( 92% of your sequence) have been modelled with 99.8% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5uvdA_



99.8 17
PDB header:transferase
Chain: A: PDB Molecule:nucleotidyltransferase-like protein;
PDBTitle: crystal structure of an antigenic nucleotidyltransferase-like protein2 from paracoccidioides brasiliensis
2c4e8iA_



99.7 12
PDB header:transferase
Chain: A: PDB Molecule:lincosamide resistance protein;
PDBTitle: crystal structure of lincosamide antibiotic adenylyltransferase lina,2 apo
3c4wqkA_



99.5 13
PDB header:transferase
Chain: A: PDB Molecule:2''-aminoglycoside nucleotidyltransferase;
PDBTitle: crystal structure of aminoglycoside nucleotidylyltransferase ant(2")-2 ia, apo form
4c4ok0B_



99.5 15
PDB header:transferase
Chain: B: PDB Molecule:putative;
PDBTitle: crystal structure of putative nucleotidyltransferase from h. pylori
5d2fcla1



97.5 16
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:TM1012-like
6c3h37B_



94.0 25
PDB header:transferase
Chain: B: PDB Molecule:trna nucleotidyl transferase-related protein;
PDBTitle: the structure of cca-adding enzyme apo form i
7d1ou5a2



93.9 11
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Poly A polymerase head domain-like
8c1sz1A_



93.7 16
PDB header:transferase/rna
Chain: A: PDB Molecule:trna nucleotidyltransferase;
PDBTitle: mechanism of cca-adding enzymes specificity revealed by crystal2 structures of ternary complexes
9c6q52A_



93.4 17
PDB header:rna binding protein
Chain: A: PDB Molecule:cca-adding enzyme;
PDBTitle: structure of a psychrophilic cca-adding enzyme in complex with cmpcpp2 at room temperature in chipx microfluidic device
10d1miwa2



93.3 21
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Poly A polymerase head domain-like
11c1miyB_



92.9 20
PDB header:translation, transferase
Chain: B: PDB Molecule:trna cca-adding enzyme;
PDBTitle: crystal structure of bacillus stearothermophilus cca-adding enzyme in2 complex with ctp
12c4x4wB_



92.8 12
PDB header:rna binding protein
Chain: B: PDB Molecule:cca trna nucleotidyltransferase 1, mitochondrial;
PDBTitle: crystal structure of the full-length human mitochondrial cca-adding2 enzyme
13d1vfga2



92.4 25
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Poly A polymerase head domain-like
14c1ou5A_



89.3 12
PDB header:translation, transferase
Chain: A: PDB Molecule:trna cca-adding enzyme;
PDBTitle: crystal structure of human cca-adding enzyme
15c3wfrH_



89.3 21
PDB header:transferase/rna
Chain: H: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme complex 2
16c3wfpB_



88.1 20
PDB header:transferase
Chain: B: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme (apo form 2)
17c3wfrG_



86.2 21
PDB header:transferase/rna
Chain: G: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme complex 2
18d1wota_



85.1 16
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Catalytic subunit of bi-partite nucleotidyltransferase
19c1vfgB_



84.2 22
PDB header:transferase/rna
Chain: B: PDB Molecule:poly a polymerase;
PDBTitle: crystal structure of trna nucleotidyltransferase complexed2 with a primer trna and an incoming atp analog
20d1r89a2



83.2 17
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Archaeal tRNA CCA-adding enzyme catalytic domain
21c3aqnA_



not modelled 82.6 18
PDB header:transferase
Chain: A: PDB Molecule:poly(a) polymerase;
PDBTitle: complex structure of bacterial protein (apo form ii)
22c3wfrE_



not modelled 82.1 19
PDB header:transferase/rna
Chain: E: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme complex 2
23c3wfpA_



not modelled 81.9 20
PDB header:transferase
Chain: A: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme (apo form 2)
24c3wfrF_



not modelled 81.8 19
PDB header:transferase/rna
Chain: F: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme complex 2
25d1knya2



not modelled 80.7 13
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Kanamycin nucleotidyltransferase (KNTase), N-terminal domain
26c3wfqG_



not modelled 80.5 19
PDB header:transferase/rna
Chain: G: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme complex 1
27c3wfqE_



not modelled 79.3 19
PDB header:transferase/rna
Chain: E: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme complex 1
28c3wfsD_



not modelled 78.7 19
PDB header:transferase/rna
Chain: D: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme complex 3
29c3wfsC_



not modelled 78.1 19
PDB header:transferase/rna
Chain: C: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme complex 3
30c3wfqH_



not modelled 71.7 19
PDB header:transferase/rna
Chain: H: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme complex 1
31c3wfoB_



not modelled 70.9 19
PDB header:transferase
Chain: B: PDB Molecule:poly a polymerase;
PDBTitle: trna processing enzyme (apo form 1)
32c2rffA_



not modelled 63.3 20
PDB header:transferase
Chain: A: PDB Molecule:putative nucleotidyltransferase;
PDBTitle: crystal structure of a putative nucleotidyltransferase (np_343093.1)2 from sulfolobus solfataricus at 1.40 a resolution
33c4s3nA_



not modelled 44.2 12
PDB header:transferase/rna
Chain: A: PDB Molecule:2'-5'-oligoadenylate synthase 3;
PDBTitle: crystal structure of human oas3 domain i in complex with dsrna
34c2bcuA_



not modelled 44.0 15
PDB header:transferase, lyase/dna
Chain: A: PDB Molecule:dna polymerase lambda;
PDBTitle: dna polymerase lambda in complex with a dna duplex2 containing an unpaired damp and a t:t mismatch
35d1no5a_



not modelled 38.3 16
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Catalytic subunit of bi-partite nucleotidyltransferase
36c2ihmA_



not modelled 35.8 19
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase mu;
PDBTitle: polymerase mu in ternary complex with gapped 11mer dna duplex and2 bound incoming nucleotide
37c4xq7A_



not modelled 35.7 22
PDB header:transferase
Chain: A: PDB Molecule:2'-5'-oligoadenylate synthase-like protein;
PDBTitle: the crystal structure of the oas-like domain (old) of human oasl
38c2la3A_



not modelled 34.6 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the nmr structure of the protein np_344798.1 reveals a cca-adding2 enzyme head domain
39c1knyA_



not modelled 32.4 12
PDB header:transferase
Chain: A: PDB Molecule:kanamycin nucleotidyltransferase;
PDBTitle: kanamycin nucleotidyltransferase
40d2fmpa3



not modelled 31.2 8
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:DNA polymerase beta-like
41d1jmsa4



not modelled 30.1 20
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:DNA polymerase beta-like
42c3zeuE_



not modelled 29.9 14
PDB header:hydrolase
Chain: E: PDB Molecule:probable trna threonylcarbamoyladenosine biosynthesis
PDBTitle: structure of a salmonella typhimurium ygjd-yeaz heterodimer bound to2 atpgammas
43c4cs6A_



not modelled 28.8 13
PDB header:transferase
Chain: A: PDB Molecule:aminoglycoside adenyltransferase;
PDBTitle: crystal structure of aada - an aminoglycoside adenyltransferase
44d1ylqa1



not modelled 28.2 18
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Catalytic subunit of bi-partite nucleotidyltransferase
45c6e0kA_



not modelled 26.7 23
PDB header:transferase
Chain: A: PDB Molecule:cgas/dncv-like nucleotidyltransferase in e. coli homolog;
PDBTitle: structure of rhodothermus marinus cdne c-ump-amp synthase
46c6gwjK_



not modelled 26.7 11
PDB header:rna binding protein
Chain: K: PDB Molecule:probable trna n6-adenosine threonylcarbamoyltransferase;
PDBTitle: protein complex
47d1q79a2



not modelled 25.4 12
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Poly(A) polymerase, PAP, N-terminal domain
48c4e80B_



not modelled 25.3 12
PDB header:transferase
Chain: B: PDB Molecule:poly(a) rna polymerase protein cid1;
PDBTitle: structural basis for the activity of a cytoplasmic rna terminal u-2 transferase
49d2vana2



not modelled 23.9 10
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:DNA polymerase beta-like
50d2q66a2



not modelled 20.2 17
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Poly(A) polymerase, PAP, N-terminal domain
51d1jqra_



not modelled 19.2 15
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:DNA polymerase beta-like
52c5idoA_



not modelled 16.7 16
PDB header:transferase
Chain: A: PDB Molecule:3' terminal uridylyl transferase;
PDBTitle: rna editing tutase 1 from trypanosoma brucei in complex with utp
53c4p4oA_



not modelled 15.8 15
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase beta;
PDBTitle: crystal structure of leishmania infantum polymerase beta: ternary gap2 complex
54c2q8uA_



not modelled 14.2 15
PDB header:hydrolase
Chain: A: PDB Molecule:exonuclease, putative;
PDBTitle: crystal structure of mre11 from thermotoga maritima msb8 (tm1635) at2 2.20 a resolution
55d1uc8a1



not modelled 13.4 11
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:Lysine biosynthesis enzyme LysX, N-terminal domain
56c5zdcL_



not modelled 12.7 14
PDB header:hydrolase
Chain: L: PDB Molecule:poly adp-ribose glycohydrolase;
PDBTitle: crystal structure of poly(adp-ribose) glycohydrolase (parg) from2 deinococcus radiodurans in complex with adp-ribose (p32)
57c3c66B_



not modelled 12.5 15
PDB header:transferase
Chain: B: PDB Molecule:poly(a) polymerase;
PDBTitle: yeast poly(a) polymerase in complex with fip1 residues 80-105
58c6girA_



not modelled 11.4 6
PDB header:cytosolic protein
Chain: A: PDB Molecule:serine--trna ligase, cytoplasmic;
PDBTitle: arabidopsis thaliana cytosolic seryl-trna synthetase
59c3hiyA_



not modelled 11.0 20
PDB header:transferase
Chain: A: PDB Molecule:minor editosome-associated tutase;
PDBTitle: minor editosome-associated tutase 1 with bound utp and mg
60c3siiA_



not modelled 10.4 9
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:poly(adp-ribose) glycohydrolase;
PDBTitle: the x-ray crystal structure of poly(adp-ribose) glycohydrolase bound2 to the inhibitor adp-hpd from thermomonospora curvata
61c1q78A_



not modelled 9.1 12
PDB header:transferase
Chain: A: PDB Molecule:poly(a) polymerase alpha;
PDBTitle: crystal structure of poly(a) polymerase in complex with 3'-2 datp and magnesium chloride
62c1kdhA_



not modelled 8.5 20
PDB header:transferase/dna
Chain: A: PDB Molecule:terminal deoxynucleotidyltransferase short
PDBTitle: binary complex of murine terminal deoxynucleotidyl2 transferase with a primer single stranded dna
63c6oteA_



not modelled 7.0 7
PDB header:ligase
Chain: A: PDB Molecule:seryl-trna synthetase, cytoplasmic;
PDBTitle: crystal structure of seryl-trna synthetase (serrs) from2 cryptosporidium parvum complexed with l-serylsulfamoyl adenosine
64c1w2wJ_



not modelled 6.8 14
PDB header:isomerase
Chain: J: PDB Molecule:5-methylthioribose-1-phosphate isomerase;
PDBTitle: crystal structure of yeast ypr118w, a methylthioribose-1-phosphate2 isomerase related to regulatory eif2b subunits
65c3auoB_



not modelled 6.7 28
PDB header:transferase/dna
Chain: B: PDB Molecule:dna polymerase beta family (x family);
PDBTitle: dna polymerase x from thermus thermophilus hb8 ternary complex with 1-2 nt gapped dna and ddgtp
66c3en9B_



not modelled 6.6 23
PDB header:hydrolase
Chain: B: PDB Molecule:o-sialoglycoprotein endopeptidase/protein kinase;
PDBTitle: structure of the methanococcus jannaschii kae1-bud32 fusion2 protein
67c3vbbB_



not modelled 6.5 11
PDB header:ligase
Chain: B: PDB Molecule:seryl-trna synthetase, cytoplasmic;
PDBTitle: crystal structure of seryl-trna synthetase from human at 2.9 angstroms
68c3lssA_



not modelled 6.3 9
PDB header:ligase
Chain: A: PDB Molecule:seryl-trna synthetase;
PDBTitle: trypanosoma brucei seryl-trna synthetase in complex with atp
69d1jqga2



not modelled 6.2 17
Fold:Ferredoxin-like
Superfamily:Protease propeptides/inhibitors
Family:Pancreatic carboxypeptidase, activation domain
70c3ol4B_



not modelled 6.2 20
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium smegmatis, an ortholog of rv0543c
71c3nybA_



not modelled 5.6 11
PDB header:transferase/rna binding protein
Chain: A: PDB Molecule:poly(a) rna polymerase protein 2;
PDBTitle: structure and function of the polymerase core of tramp, a rna2 surveillance complex
72c4oydB_



not modelled 5.5 15
PDB header:viral protein/inhibitor
Chain: B: PDB Molecule:computationally designed inhibitor;
PDBTitle: crystal structure of a computationally designed inhibitor of an2 epstein-barr viral bcl-2 protein
73c5fnpB_



not modelled 5.4 11
PDB header:oxidoreductase
Chain: B: PDB Molecule:iron-sulfur cluster repair protein ytfe;
PDBTitle: high resolution zn containing iron sulfur cluster repair2 protein ytfe
74d2bcqa3



not modelled 5.3 14
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:DNA polymerase beta-like
75c4zrlA_



not modelled 5.2 11
PDB header:transferase
Chain: A: PDB Molecule:poly(a) rna polymerase gld-2;
PDBTitle: structure of the non canonical poly(a) polymerase complex gld-2 - gld-2 3
76d1kzyc2



not modelled 5.2 19
Fold:BRCT domain
Superfamily:BRCT domain
Family:53BP1
77d1zbsa1



not modelled 5.2 16
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like

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