Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0080_(-)_89019_89477
DateTue Jul 23 14:50:11 BST 2019
Unique Job ID4a1a7350b49e5194
SequenceMSPGSRRASP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:31.853 Y:51.010 Z:40.491
Model (left) based on template c3fkhB_
Top template information
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative pyridoxamine 5'-phosphate oxidase;
PDBTitle: crystal structure of putative pyridoxamine 5'-phosphate oxidase2 (np_601736.1) from corynebacterium glutamicum atcc 13032 kitasato at3 2.51 a resolution
Confidence and coverage
Confidence:100.0% Coverage: 84%
127 residues ( 84% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3fkhB_



100.0 33
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative pyridoxamine 5'-phosphate oxidase;
PDBTitle: crystal structure of putative pyridoxamine 5'-phosphate oxidase2 (np_601736.1) from corynebacterium glutamicum atcc 13032 kitasato at3 2.51 a resolution
2c6rk0A_



100.0 14
PDB header:flavoprotein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: structure of the flavocytochrome anf3 from azotobacter vinelandii
3c3u0iA_



100.0 15
PDB header:unknown function
Chain: A: PDB Molecule:probable fad-binding, putative uncharacterized protein;
PDBTitle: crystal structure of a probable fad-binding, putative uncharacterized2 protein from brucella melitensis
4c6eciQ_



100.0 35
PDB header:fad-binding protein
Chain: Q: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related, fmn-binding
PDBTitle: structure of the fad binding protein msmeg_5243 from mycobacterium2 smegmatis
5c3cp3A_



100.0 31
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of conserved protein of unknown function dip18742 from corynebacterium diphtheriae
6d2hq9a1



100.0 23
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
7d2fura1



100.0 13
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
8d2vpaa1



100.0 18
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
9d2fg9a1



100.0 11
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
10c4ybnB_



100.0 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:flavin-nucleotide-binding protein;
PDBTitle: structure of the fad and heme binding protein msmeg_4975 from2 mycobacterium smegmatis
11d2htia1



100.0 15
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
12c2htiA_



100.0 15
PDB header:fmn-binding protein
Chain: A: PDB Molecule:bh0577 protein;
PDBTitle: crystal structure of a flavin-nucleotide-binding protein (bh_0577)2 from bacillus halodurans at 2.50 a resolution
13d1rfea_



99.9 17
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
14c4zkyB_



99.9 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:pyridoxamine 5-phosphate oxidase;
PDBTitle: structure of f420 binding protein, msmeg_6526, from mycobacterium2 smegmatis
15c3f7eB_



99.9 13
PDB header:unknown function
Chain: B: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related, fmn-
PDBTitle: msmeg_3380 f420 reductase
16c2ol5B_



99.9 11
PDB header:transcription regulator
Chain: B: PDB Molecule:pai 2 protein;
PDBTitle: crystal structure of a protease synthase and sporulation negative2 regulatory protein pai 2 from bacillus stearothermophilus
17c3db0B_



99.9 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:lin2891 protein;
PDBTitle: crystal structure of putative pyridoxamine 5'-phosphate oxidase2 (np_472219.1) from listeria innocua at 2.00 a resolution
18c3ec6A_



99.9 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:general stress protein 26;
PDBTitle: crystal structure of the general stress protein 26 from bacillus2 anthracis str. sterne
19d2asfa1



99.8 20
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
20d2i02a1



99.8 14
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
21c3tgvD_



not modelled 99.8 8
PDB header:heme binding protein
Chain: D: PDB Molecule:heme-binding protein hutz;
PDBTitle: crystal structure of hutz,the heme storsge protein from vibrio2 cholerae
22c2re7A_



not modelled 99.8 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase related2 protein (psyc_0186) from psychrobacter arcticus 273-4 at 2.50 a3 resolution
23d1w9aa_



not modelled 99.8 15
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
24c2iabB_



not modelled 99.7 14
PDB header:unknown function
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a protein with fmn-binding split barrel fold2 (np_828636.1) from streptomyces avermitilis at 2.00 a resolution
25d2fhqa1



not modelled 99.7 17
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
26c2ig6B_



not modelled 99.7 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:nimc/nima family protein;
PDBTitle: crystal structure of a nimc/nima family protein (ca_c2569) from2 clostridium acetobutylicum at 1.80 a resolution
27d2hq7a1



not modelled 99.7 14
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
28d1vl7a_



not modelled 99.7 7
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
29c3u34D_



not modelled 99.6 12
PDB header:protein binding
Chain: D: PDB Molecule:general stress protein;
PDBTitle: crystal structure of the general stress fmn/fad binding protein from2 the phytopathogen xanthomonas citri
30c3dmbA_



not modelled 99.6 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative general stress protein 26 with a pnp-oxidase like
PDBTitle: crystal structure of a putative general stress family protein2 (xcc2264) from xanthomonas campestris pv. campestris at 2.30 a3 resolution
31c2hhzA_



not modelled 99.6 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase-related2 protein (ssuidraft_2804) from streptococcus suis 89/1591 at 2.00 a3 resolution
32d2arza1



not modelled 99.6 13
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
33c5escD_



not modelled 99.6 13
PDB header:oxidoreductase
Chain: D: PDB Molecule:hupz;
PDBTitle: crystal structure of group a streptococcus hupz
34c2htdB_



not modelled 99.6 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:predicted flavin-nucleotide-binding protein from cog3576
PDBTitle: crystal structure of a putative pyridoxamine 5'-phosphate oxidase2 (ldb0262) from lactobacillus delbrueckii subsp. at 1.60 a resolution
35c5bncB_



not modelled 99.5 17
PDB header:heme binding protein
Chain: B: PDB Molecule:heme binding protein msmeg_6519;
PDBTitle: structure of heme binding protein msmeg_6519 from mycobacterium2 smegmatis
36c3gasA_



not modelled 99.5 7
PDB header:oxidoreductase
Chain: A: PDB Molecule:heme oxygenase;
PDBTitle: crystal structure of helicobacter pylori heme oxygenase hugz2 in complex with heme
37c3dnhB_



not modelled 99.5 15
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein atu2129;
PDBTitle: the crystal structure of the protein atu2129 (unknown function) from2 agrobacterium tumefaciens str. c58
38c2q9kA_



not modelled 99.5 7
PDB header:oxidoreductase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative oxidoreductase (exig_1997) from2 exiguobacterium sibiricum 255-15 at 1.59 a resolution
39c2qeaB_



not modelled 99.4 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative general stress protein 26;
PDBTitle: crystal structure of a putative general stress protein 26 (jann_0955)2 from jannaschia sp. ccs1 at 2.46 a resolution
40d1flma_



not modelled 99.4 11
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
41d1ty9a_



not modelled 99.3 20
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
42d1t9ma_



not modelled 99.2 18
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
43d2a2ja1



not modelled 99.2 21
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
44d1dnla_



not modelled 99.2 17
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
45c2ou5B_



not modelled 99.1 12
PDB header:flavoprotein
Chain: B: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related, fmn-binding;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase-related fmn-2 binding protein (jann_0254) from jannaschia sp. ccs1 at 1.60 a3 resolution
46c2a2jA_



not modelled 99.1 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxamine 5'-phosphate oxidase;
PDBTitle: crystal structure of a putative pyridoxine 5'-phosphate oxidase2 (rv2607) from mycobacterium tuberculosis
47c4hmwB_



not modelled 99.1 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:pyridoxamine 5'-phosphate oxidase;
PDBTitle: crystal structure of phzg from burkholderia lata 383
48d1nrga_



not modelled 99.1 13
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
49c1nrgA_



not modelled 99.1 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxine 5'-phosphate oxidase;
PDBTitle: structure and properties of recombinant human pyridoxine-5'-phosphate2 oxidase
50d1xhna1



not modelled 99.0 13
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
51c4n7rD_



not modelled 98.8 14
PDB header:oxidoreductase/protein binding
Chain: D: PDB Molecule:genomic dna, chromosome 3, p1 clone: mxl8;
PDBTitle: crystal structure of arabidopsis glutamyl-trna reductase in complex2 with its binding protein
52d1ci0a_



not modelled 98.4 14
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
53c2i51B_



not modelled 98.4 16
PDB header:flavoprotein
Chain: B: PDB Molecule:uncharacterized conserved protein of cog5135;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase-related, fmn2 binding protein (npun_f5749) from nostoc punctiforme pcc 73102 at3 1.40 a resolution
54c3ba3A_



not modelled 97.8 6
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxamine 5'-phosphate oxidase-like protein;
PDBTitle: crystal structure of pyridoxamine 5'-phosphate oxidase-like protein2 (np_783940.1) from lactobacillus plantarum at 1.55 a resolution
55c3r5yC_



not modelled 97.5 22
PDB header:unknown function
Chain: C: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of a deazaflavin-dependent nitroreductase from nocardia2 farcinica, with co-factor f420
56c3r5zB_



not modelled 97.4 18
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of a deazaflavin-dependent reductase from nocardia2 farcinica, with co-factor f420
57c3r5wO_



not modelled 97.3 20
PDB header:oxidoreductase
Chain: O: PDB Molecule:deazaflavin-dependent nitroreductase;
PDBTitle: structure of ddn, the deazaflavin-dependent nitroreductase from2 mycobacterium tuberculosis involved in bioreductive activation of pa-3 824, with co-factor f420
58c4y9iA_



not modelled 96.9 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:mycobacterium tuberculosis paralogous family 11;
PDBTitle: structure of f420-h2 dependent reductase (fdr-a) msmeg_2027
59c3h96B_



not modelled 96.8 19
PDB header:flavoprotein
Chain: B: PDB Molecule:f420-h2 dependent reductase a;
PDBTitle: msmeg_3358 f420 reductase
60d2ptfa1



not modelled 87.5 15
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:MTH863-like
61c3e4vA_



not modelled 82.3 15
PDB header:flavoprotein
Chain: A: PDB Molecule:nadh:fmn oxidoreductase like protein;
PDBTitle: crystal structure of nadh:fmn oxidoreductase like protein in complex2 with fmn (yp_544701.1) from methylobacillus flagellatus kt at 1.40 a3 resolution
62d2nr4a1



not modelled 82.0 16
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:MTH863-like
63c3hmzA_



not modelled 79.2 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavin reductase domain protein, fmn-binding;
PDBTitle: crystal structure of a fmn-binding domain of flavin reductases-like2 enzyme (sbal_0626) from shewanella baltica os155 at 1.50 a resolution
64c3fgeA_



not modelled 79.0 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative flavin reductase with split barrel domain;
PDBTitle: crystal structure of putative flavin reductase with split barrel2 domain (yp_750721.1) from shewanella frigidimarina ncimb 400 at 1.743 a resolution
65c2ptfB_



not modelled 74.3 15
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein mth_863;
PDBTitle: crystal structure of protein mth_863 from methanobacterium2 thermoautotrophicum bound to fmn
66d1ejea_



not modelled 69.3 12
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:NADH:FMN oxidoreductase-like
67c3b5mD_



not modelled 58.9 14
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of conserved uncharacterized protein from2 rhodopirellula baltica
68c4z85A_



not modelled 51.7 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:2-nitrobenzoate nitroreductase;
PDBTitle: crystal structur of pseudomonas fluorescens 2-nitrobenzoate 2-2 nitroreductase nbaa
69d2imla1



not modelled 47.1 8
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:MTH863-like
70c3pftA_



not modelled 41.3 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavin reductase;
PDBTitle: crystal structure of untagged c54a mutant flavin reductase (dszd) in2 complex with fmn from mycobacterium goodii
71c3bpkB_



not modelled 32.6 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:nitrilotriacetate monooxygenase component b;
PDBTitle: crystal structure of nitrilotriacetate monooxygenase component b from2 bacillus cereus
72c4fmoB_



not modelled 29.2 13
PDB header:hydrolase
Chain: B: PDB Molecule:dna mismatch repair protein pms1;
PDBTitle: structure of the c-terminal domain of the saccharomyces cerevisiae2 mutl alpha (mlh1/pms1) heterodimer bound to a fragment of exo1
73c2xi5D_



not modelled 27.0 26
PDB header:transferase
Chain: D: PDB Molecule:rna polymerase l;
PDBTitle: n-terminal endonuclease domain of la crosse virus l-protein
74c2xi7B_



not modelled 26.9 26
PDB header:transferase
Chain: B: PDB Molecule:rna polymerase l;
PDBTitle: n-terminal endonuclease domain of la crosse virus l-protein
75c2r6vA_



not modelled 22.4 14
PDB header:flavoprotein
Chain: A: PDB Molecule:uncharacterized protein ph0856;
PDBTitle: crystal structure of fmn-binding protein (np_142786.1) from pyrococcus2 horikoshii at 1.35 a resolution
76c3brgC_



not modelled 20.6 29
PDB header:dna binding protein/dna
Chain: C: PDB Molecule:recombining binding protein suppressor of hairless;
PDBTitle: csl (rbp-jk) bound to dna
77c2zkru_



not modelled 17.8 10
PDB header:ribosomal protein/rna
Chain: U: PDB Molecule:rna expansion segment es41;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
78c3ccjU_



not modelled 17.7 10
PDB header:ribosome
Chain: U: PDB Molecule:50s ribosomal protein l24e;
PDBTitle: structure of anisomycin resistant 50s ribosomal subunit: 23s rrna2 mutation c2534u
79d1vqou1



not modelled 16.6 10
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Ribosomal protein L24e
80c3j21V_



not modelled 16.4 14
PDB header:ribosome
Chain: V: PDB Molecule:50s ribosomal protein l24e;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
81c4a1eT_



not modelled 15.3 21
PDB header:ribosome
Chain: T: PDB Molecule:rpl24;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna, 5.8s rrna3 and proteins of molecule 1
82c3iz5Z_



not modelled 15.1 14
PDB header:ribosome
Chain: Z: PDB Molecule:60s ribosomal protein l24 (l24e);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
83c4ukjN_



not modelled 15.0 7
PDB header:ribosome
Chain: N: PDB Molecule:60s ribosomal protein l24-a;
PDBTitle: crystal structure of blasticidin s bound to the yeast 80s ribosome
84c4uloO_



not modelled 14.8 7
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l24-a;
PDBTitle: crystal structure of phyllanthoside bound to the yeast 80s ribosome
85c4uldO_



not modelled 14.8 7
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l24-a;
PDBTitle: crystal structure of nagilactone c bound to the yeast 80s ribosome
86c3j39W_



not modelled 14.7 10
PDB header:ribosome
Chain: W: PDB Molecule:60s ribosomal protein l24;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
87c4ukyO_



not modelled 14.0 7
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l24-a;
PDBTitle: crystal structure of edeine bound to the yeast 80s ribosome
88c4ukeO_



not modelled 14.0 7
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l24-a;
PDBTitle: crystal structure of cycloheximide bound to the yeast 80s ribosome
89c4b6aW_



not modelled 14.0 7
PDB header:ribosome
Chain: W: PDB Molecule:60s ribosomal protein l24-a;
PDBTitle: cryo-em structure of the 60s ribosomal subunit in complex2 with arx1 and rei1
90c4byuW_



not modelled 14.0 7
PDB header:ribosome
Chain: W: PDB Molecule:60s ribosomal protein l24-a;
PDBTitle: cryo-em reconstruction of the 80s-eif5b-met-itrnamet2 eukaryotic translation initiation complex
91c4bynW_



not modelled 14.0 7
PDB header:ribosome
Chain: W: PDB Molecule:60s ribosomal protein l24-a;
PDBTitle: cryo-em reconstruction of the 80s-eif5b-met-itrnamet eukaryotic2 translation initiation complex
92c3u5iW_



not modelled 14.0 7
PDB header:ribosome
Chain: W: PDB Molecule:60s ribosomal protein l24-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 60s subunit, ribosome b
93c4ujoO_



not modelled 13.8 7
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l24-a;
PDBTitle: crystal structure of lycorine bound to the yeast 80s ribosome
94c4ukoN_



not modelled 13.8 7
PDB header:ribosome
Chain: N: PDB Molecule:60s ribosomal protein l24-a;
PDBTitle: crystal structure of cryptopleurine bound to the yeast 80s ribosome
95c4ujjO_



not modelled 13.8 7
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l24-a;
PDBTitle: crystal structure of narciclasine bound to the yeast 80s ribosome
96c4ul3O_



not modelled 13.8 7
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l24-a;
PDBTitle: crystal structure of geneticin bound to the yeast 80s ribosome
97c4ul8O_



not modelled 13.8 7
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l24-a;
PDBTitle: crystal structure of homoharringtonine bound to the yeast 80s ribosome
98c4uk3O_



not modelled 13.8 7
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l24-a;
PDBTitle: crystal structure of anisomycin bound to the yeast 80s ribosome
99c4ultN_



not modelled 13.8 7
PDB header:ribosome
Chain: N: PDB Molecule:60s ribosomal protein l24-a;
PDBTitle: crystal structure of verrucarin bound to the yeast 80s ribosome

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