Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0082_(-)_89921_90400
DateTue Jul 23 14:50:11 BST 2019
Unique Job ID85ab38ee423928b0
SequenceMGWVAKIFRV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:40.657 Y:33.951 Z:41.427
Model (left) based on template c6gcsK_
Top template information
PDB header:oxidoreductase
Chain: K: PDB Molecule:psst subunit (nukm);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
Confidence and coverage
Confidence:100.0% Coverage: 81%
128 residues ( 81% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6gcsK_
100.0 37
PDB header:oxidoreductase
Chain: K: PDB Molecule:psst subunit (nukm);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
2c6humK_
100.0 38
PDB header:proton transport
Chain: K: PDB Molecule:nad(p)h-quinone oxidoreductase subunit k;
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
3c5lc5B_
100.0 37
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadh dehydrogenase [ubiquinone] iron-sulfur protein 7,
PDBTitle: structure of mammalian respiratory complex i, class2
4c6cfwJ_
100.0 44
PDB header:membrane protein
Chain: J: PDB Molecule:probable membrane-bound hydrogenase subunit mbhj;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
5d2fug61
100.0 39
Fold:HydA/Nqo6-like
Superfamily:HydA/Nqo6-like
Family:Nq06-like
6d1frfs_
100.0 22
Fold:HydA/Nqo6-like
Superfamily:HydA/Nqo6-like
Family:Nickel-iron hydrogenase, small subunit
7c5odiE_
100.0 26
PDB header:oxidoreductase
Chain: E: PDB Molecule:methyl-viologen reducing hydrogenase, subunit g;
PDBTitle: heterodisulfide reductase / [nife]-hydrogenase complex from2 methanothermococcus thermolithotrophicus cocrystallized with com-sh
8c5xf9G_
100.0 26
PDB header:oxidoreductase
Chain: G: PDB Molecule:nad-reducing hydrogenase;
PDBTitle: crystal structure of nad+-reducing [nife]-hydrogenase in the air-2 oxidized state
9d1e3da_
100.0 19
Fold:HydA/Nqo6-like
Superfamily:HydA/Nqo6-like
Family:Nickel-iron hydrogenase, small subunit
10c6ehqT_
100.0 25
PDB header:oxidoreductase
Chain: T: PDB Molecule:hydrogenase-2 small chain;
PDBTitle: e. coli hydrogenase-2 (as isolated form).
11d1wuis1
100.0 25
Fold:HydA/Nqo6-like
Superfamily:HydA/Nqo6-like
Family:Nickel-iron hydrogenase, small subunit
12c1h2aS_
100.0 25
PDB header:oxidoreductase
Chain: S: PDB Molecule:hydrogenase;
PDBTitle: single crystals of hydrogenase from desulfovibrio vulgaris
13d1cc1s_
100.0 24
Fold:HydA/Nqo6-like
Superfamily:HydA/Nqo6-like
Family:Nickel-iron hydrogenase, small subunit
14c3rgwS_
100.0 15
PDB header:oxidoreductase/oxidoreductase
Chain: S: PDB Molecule:membrane-bound hydrogenase (nife) small subunit hoxk;
PDBTitle: crystal structure at 1.5 a resolution of an h2-reduced, o2-tolerant2 hydrogenase from ralstonia eutropha unmasks a novel iron-sulfur3 cluster
15d1yq9a1
100.0 21
Fold:HydA/Nqo6-like
Superfamily:HydA/Nqo6-like
Family:Nickel-iron hydrogenase, small subunit
16c3myrE_
100.0 26
PDB header:oxidoreductase
Chain: E: PDB Molecule:hydrogenase (nife) small subunit hyda;
PDBTitle: crystal structure of [nife] hydrogenase from allochromatium vinosum in2 its ni-a state
17c4gd3T_
100.0 22
PDB header:oxidoreductase/electron transport
Chain: T: PDB Molecule:hydrogenase-1 small chain;
PDBTitle: structure of e. coli hydrogenase-1 in complex with cytochrome b
18c3zfsB_
100.0 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:f420-reducing hydrogenase, subunit gamma;
PDBTitle: cryo-em structure of the f420-reducing nife-hydrogenase from a2 methanogenic archaeon with bound substrate
19c2wpnA_
100.0 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:periplasmic [nifese] hydrogenase, small subunit;
PDBTitle: structure of the oxidised, as-isolated nifese hydrogenase from d.2 vulgaris hildenborough
20c5aa5D_
99.9 25
PDB header:oxidoreductase
Chain: D: PDB Molecule:nife-hydrogenase small subunit, hofk;
PDBTitle: actinobacterial-type nife-hydrogenase from ralstonia eutropha h16 at2 2.85 angstrom resolution
21c4jc0B_
not modelled 77.2 11
PDB header:transferase
Chain: B: PDB Molecule:ribosomal protein s12 methylthiotransferase rimo;
PDBTitle: crystal structure of thermotoga maritima holo rimo in complex with2 pentasulfide, northeast structural genomics consortium target vr77
22d1e5da1
not modelled 44.4 20
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
23d1fmfa_
not modelled 34.9 19
Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
24c6h0cA_
not modelled 34.1 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative diflavin flavoprotein a 3;
PDBTitle: flv1 flavodiiron core from synechocystis sp. pcc6803
25c2r47C_
not modelled 29.5 15
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized protein mth_862;
PDBTitle: crystal structure of mth_862 protein of unknown function from2 methanothermobacter thermautotrophicus
26d2h1qa1
not modelled 29.1 21
Fold:PLP-dependent transferase-like
Superfamily:Dhaf3308-like
Family:Dhaf3308-like
27c3npgD_
not modelled 28.9 18
PDB header:unknown function
Chain: D: PDB Molecule:uncharacterized duf364 family protein;
PDBTitle: crystal structure of a protein with unknown function from duf3642 family (ph1506) from pyrococcus horikoshii at 2.70 a resolution
28c2d3yA_
not modelled 28.0 30
PDB header:hydrolase
Chain: A: PDB Molecule:uracil-dna glycosylase;
PDBTitle: crystal structure of uracil-dna glycosylase from thermus thermophilus2 hb8
29c3rfqC_
not modelled 27.4 16
PDB header:biosynthetic protein
Chain: C: PDB Molecule:pterin-4-alpha-carbinolamine dehydratase moab2;
PDBTitle: crystal structure of pterin-4-alpha-carbinolamine dehydratase moab22 from mycobacterium marinum
30d1jlja_
not modelled 23.6 9
Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
31c2g4rB_
not modelled 23.1 16
PDB header:biosynthetic protein
Chain: B: PDB Molecule:molybdopterin biosynthesis mog protein;
PDBTitle: anomalous substructure of moga
32c2wcvI_
not modelled 22.3 12
PDB header:isomerase
Chain: I: PDB Molecule:l-fucose mutarotase;
PDBTitle: crystal structure of bacterial fucu
33d1ycga1
not modelled 21.7 23
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
34c3rl4A_
not modelled 21.1 24
PDB header:hydrolase
Chain: A: PDB Molecule:metallophosphoesterase mpped2;
PDBTitle: rat metallophosphodiesterase mpped2 g252h mutant
35d2f7wa1
not modelled 17.2 15
Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
36c5kojD_
not modelled 16.7 19
PDB header:oxidoreductase
Chain: D: PDB Molecule:nitrogenase femo beta subunit protein nifk;
PDBTitle: nitrogenase mofep protein in the ids oxidized state
37d2g2ca1
not modelled 16.6 11
Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
38c3ikbB_
not modelled 16.5 24
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized conserved protein;
PDBTitle: the structure of a conserved protein from streptococcus2 mutans ua159.
39c3pdiG_
not modelled 16.1 20
PDB header:protein binding
Chain: G: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nife;
PDBTitle: precursor bound nifen
40c2is8A_
not modelled 15.9 14
PDB header:structural protein
Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab;
PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8
41c4fo5A_
not modelled 14.9 8
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin-like protein;
PDBTitle: crystal structure of a thioredoxin-like protein (bdi_1100) from2 parabacteroides distasonis atcc 8503 at 2.02 a resolution
42c5g2rA_
not modelled 14.8 22
PDB header:transferase
Chain: A: PDB Molecule:molybdopterin biosynthesis protein cnx1;
PDBTitle: crystal structure of the mo-insertase domain cnx1e from2 arabidopsis thaliana
43d2dlda1
not modelled 13.4 15
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Formate/glycerate dehydrogenases, NAD-domain
44d1sqsa_
not modelled 13.2 11
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Hypothetical protein SP1951
45d1xhja_
not modelled 13.2 21
Fold:Alpha-lytic protease prodomain-like
Superfamily:Fe-S cluster assembly (FSCA) domain-like
Family:NifU C-terminal domain-like
46d1ogda_
not modelled 12.8 16
Fold:RbsD-like
Superfamily:RbsD-like
Family:RbsD-like
47c2fu3A_
not modelled 12.3 18
PDB header:biosynthetic protein/structural protein
Chain: A: PDB Molecule:gephyrin;
PDBTitle: crystal structure of gephyrin e-domain
48c3e7nB_
not modelled 12.2 24
PDB header:transport protein
Chain: B: PDB Molecule:d-ribose high-affinity transport system;
PDBTitle: crystal structure of d-ribose high-affinity transport system from2 salmonella typhimurium lt2
49c3ca8B_
not modelled 12.1 21
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein ydcf;
PDBTitle: crystal structure of escherichia coli ydcf, an s-adenosyl-l-methionine2 utilizing enzyme
50c2nqqA_
not modelled 12.1 26
PDB header:biosynthetic protein
Chain: A: PDB Molecule:molybdopterin biosynthesis protein moea;
PDBTitle: moea r137q
51d1xwdb1
not modelled 11.9 18
Fold:Cystine-knot cytokines
Superfamily:Cystine-knot cytokines
Family:Gonadodropin/Follitropin
52c4xcwF_
not modelled 11.8 12
PDB header:transferase
Chain: F: PDB Molecule:molybdopterin adenylyltransferase;
PDBTitle: crystal structure of molybdenum cofactor biosynthesis protein moga2 from helicobacter pylori str. j99
53c2xdqB_
not modelled 11.4 8
PDB header:oxidoreductase
Chain: B: PDB Molecule:light-independent protochlorophyllide reductase subunit b;
PDBTitle: dark operative protochlorophyllide oxidoreductase (chln-chlb)2 complex
54c4ptzC_
not modelled 11.4 20
PDB header:oxidoreductase
Chain: C: PDB Molecule:fmn reductase ssue;
PDBTitle: crystal structure of the escherichia coli alkanesulfonate fmn2 reductase ssue in fmn-bound form
55c5n6yD_
not modelled 11.3 12
PDB header:oxidoreductase
Chain: D: PDB Molecule:nitrogenase vanadium-iron protein alpha chain;
PDBTitle: azotobacter vinelandii vanadium nitrogenase
56d2djia1
not modelled 11.2 20
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Pyruvate oxidase and decarboxylase, middle domain
57c2z1dA_
not modelled 11.0 28
PDB header:metal binding protein
Chain: A: PDB Molecule:hydrogenase expression/formation protein hypd;
PDBTitle: crystal structure of [nife] hydrogenase maturation protein, hypd from2 thermococcus kodakaraensis
58c4pfxA_
not modelled 10.4 32
PDB header:transferase
Chain: A: PDB Molecule:putative glycosyltransferase (galt1);
PDBTitle: the highly conserved domain of unknown function 1792 has a distinct2 glycosyltransferase fold
59d1j4aa1
not modelled 10.1 10
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Formate/glycerate dehydrogenases, NAD-domain
60c6a4tB_
not modelled 10.0 24
PDB header:hydrolase
Chain: B: PDB Molecule:peptidase e;
PDBTitle: crystal structure of peptidase e from deinococcus radiodurans r1
61c1ychD_
not modelled 9.9 25
PDB header:oxidoreductase
Chain: D: PDB Molecule:nitric oxide reductase;
PDBTitle: x-ray crystal structures of moorella thermoacetica fpra. novel diiron2 site structure and mechanistic insights into a scavenging nitric3 oxide reductase
62c5v4aB_
not modelled 9.9 24
PDB header:transferase
Chain: B: PDB Molecule:glycosyltransferase (duf1792);
PDBTitle: a new glycosyltransferase (duf1792) from streptococcus sanguinis
63c4uunA_
not modelled 9.7 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:l-lactate dehydrogenase;
PDBTitle: trichomonas vaginalis lactate dehydrogenase in complex with nadh
64c4iciA_
not modelled 9.6 6
PDB header:flavoprotein
Chain: A: PDB Molecule:putative flavoprotein;
PDBTitle: crystal structure of a putative flavoprotein (bacegg_01620) from2 bacteroides eggerthii dsm 20697 at 1.40 a resolution
65d1xjca_
not modelled 9.5 38
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
66c1pt9B_
not modelled 9.5 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:nad(p) transhydrogenase, mitochondrial;
PDBTitle: crystal structure analysis of the diii component of transhydrogenase2 with a thio-nicotinamide nucleotide analogue
67c4a34L_
not modelled 9.4 16
PDB header:isomerase
Chain: L: PDB Molecule:rbsd/fucu transport protein family protein;
PDBTitle: crystal structure of the fucose mutarotase in complex with2 l-fucose from streptococcus pneumoniae
68d1rw6a_
not modelled 9.2 25
Fold:STAT-like
Superfamily:CAPPD, an extracellular domain of amyloid beta A4 protein
Family:CAPPD, an extracellular domain of amyloid beta A4 protein
69c3pdiB_
not modelled 9.1 16
PDB header:protein binding
Chain: B: PDB Molecule:nitrogenase mofe cofactor biosynthesis protein nifn;
PDBTitle: precursor bound nifen
70d2ob5a1
not modelled 9.1 16
Fold:RbsD-like
Superfamily:RbsD-like
Family:RbsD-like
71c5fyqB_
not modelled 8.9 22
PDB header:hydrolase
Chain: B: PDB Molecule:nad-dependent protein deacetylase sirtuin-2;
PDBTitle: sirt2 in complex with a 13-mer trifluoroacetylated ran peptide
72c4iloA_
not modelled 8.8 14
PDB header:unknown function
Chain: A: PDB Molecule:ct398;
PDBTitle: 2.12a resolution structure of ct398 from chlamydia trachomatis
73c2gesA_
not modelled 8.8 31
PDB header:transferase
Chain: A: PDB Molecule:pantothenate kinase;
PDBTitle: pantothenate kinase from mycobacterium tuberculosis (mtpank) in2 complex with a coenzyme a derivative, form-i (rt)
74d1d4oa_
not modelled 8.6 24
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Transhydrogenase domain III (dIII)
75c3d7nA_
not modelled 8.6 16
PDB header:electron transport
Chain: A: PDB Molecule:flavodoxin, wrba-like protein;
PDBTitle: the crystal structure of the flavodoxin, wrba-like protein from2 agrobacterium tumefaciens
76d1vmea1
not modelled 8.5 13
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
77d1civa1
not modelled 8.5 15
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
78c3mglA_
not modelled 8.4 17
PDB header:transport protein
Chain: A: PDB Molecule:sulfate permease family protein;
PDBTitle: crystal structure of permease family protein from vibrio cholerae
79c1qfwB_
not modelled 8.4 25
PDB header:immune system
Chain: B: PDB Molecule:gonadotrophin beta subunit;
PDBTitle: ternary complex of human chorionic gonadotropin with fv anti alpha2 subunit and fv anti beta subunit
80d1hcnb_
not modelled 8.4 25
Fold:Cystine-knot cytokines
Superfamily:Cystine-knot cytokines
Family:Gonadodropin/Follitropin
81d1m1na_
not modelled 8.2 11
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Nitrogenase iron-molybdenum protein
82c2wnyB_
not modelled 8.2 10
PDB header:unknown function
Chain: B: PDB Molecule:conserved protein mth689;
PDBTitle: structure of mth689, a duf54 protein from methanothermobacter2 thermautotrophicus
83c3aerC_
not modelled 8.2 20
PDB header:oxidoreductase
Chain: C: PDB Molecule:light-independent protochlorophyllide reductase subunit n;
PDBTitle: structure of the light-independent protochlorophyllide reductase2 catalyzing a key reduction for greening in the dark
84c2wzlA_
not modelled 8.1 15
PDB header:viral protein
Chain: A: PDB Molecule:phosphoprotein;
PDBTitle: the structure of the n-rna binding domain of the mokola2 virus phosphoprotein
85d2fy6a1
not modelled 8.1 18
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
86c3lklB_
not modelled 8.0 13
PDB header:transport protein
Chain: B: PDB Molecule:antisigma-factor antagonist stas;
PDBTitle: crystal structure of the c-terminal domain of anti-sigma factor2 antagonist stas from rhodobacter sphaeroides
87d1th5a1
not modelled 7.9 14
Fold:Alpha-lytic protease prodomain-like
Superfamily:Fe-S cluster assembly (FSCA) domain-like
Family:NifU C-terminal domain-like
88c2xdqA_
not modelled 7.9 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:light-independent protochlorophyllide reductase subunit n;
PDBTitle: dark operative protochlorophyllide oxidoreductase (chln-chlb)2 complex
89d1pnoa_
not modelled 7.7 20
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Transhydrogenase domain III (dIII)
90d2i9be3
not modelled 7.7 50
Fold:Snake toxin-like
Superfamily:Snake toxin-like
Family:Extracellular domain of cell surface receptors
91d2fd6u3
not modelled 7.6 50
Fold:Snake toxin-like
Superfamily:Snake toxin-like
Family:Extracellular domain of cell surface receptors
92c3mvkA_
not modelled 7.6 24
PDB header:isomerase
Chain: A: PDB Molecule:protein fucu;
PDBTitle: the crystal structure of fucu from bifidobacterium longum to 1.65a
93d2b0ja2
not modelled 7.6 16
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
94d1sc6a1
not modelled 7.5 7
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Formate/glycerate dehydrogenases, NAD-domain
95c5hcdD_
not modelled 7.2 71
PDB header:immune system
Chain: D: PDB Molecule:rhipicephalus microplus raci2;
PDBTitle: ternary complex of human complement c5 with ornithodoros moubata omci2 and rhipicephalus microplus raci2
96c2vzhA_
not modelled 7.1 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh-dependent fmn reductase;
PDBTitle: structures of nadh:fmn oxidoreductase (emob)-fmn complex
97c1mldA_
not modelled 6.8 15
PDB header:oxidoreductase(nad(a)-choh(d))
Chain: A: PDB Molecule:malate dehydrogenase;
PDBTitle: refined structure of mitochondrial malate dehydrogenase2 from porcine heart and the consensus structure for3 dicarboxylic acid oxidoreductases
98d1uzxa_
not modelled 6.8 23
Fold:UBC-like
Superfamily:UBC-like
Family:UEV domain
99c5y06A_
not modelled 6.8 29
PDB header:unknown function
Chain: A: PDB Molecule:msmeg_4306;
PDBTitle: structural characterization of msmeg_4306 from mycobacterium smegmatis

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