Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0084_(hycD)_92325_93275
DateTue Jul 23 14:50:12 BST 2019
Unique Job ID1662f21d38156cf3
SequenceMSYLAGAAQI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:50.567 Y:52.050 Z:54.394
Model (left) based on template c6gcs1_
Top template information
PDB header:oxidoreductase
Chain: 1: PDB Molecule:nd1 subunit (nu1m);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
Confidence and coverage
Confidence:100.0% Coverage: 97%
308 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6gcs1_



100.0 18
PDB header:oxidoreductase
Chain: 1: PDB Molecule:nd1 subunit (nu1m);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
2c6humA_



100.0 21
PDB header:proton transport
Chain: A: PDB Molecule:nad(p)h-quinone oxidoreductase subunit 1;
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
3c6cfwM_



100.0 22
PDB header:membrane protein
Chain: M: PDB Molecule:mbh13 nadh dehydrogenase subunit;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
4c5lc5H_



100.0 21
PDB header:oxidoreductase
Chain: H: PDB Molecule:nadh-ubiquinone oxidoreductase chain 1;
PDBTitle: structure of mammalian respiratory complex i, class2
5c4he8H_



100.0 21
PDB header:oxidoreductase
Chain: H: PDB Molecule:nadh-quinone oxidoreductase subunit 8;
PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 thermus thermophilus
6c4heaT_



89.1 13
PDB header:oxidoreductase
Chain: T: PDB Molecule:nadh-quinone oxidoreductase subunit 12;
PDBTitle: crystal structure of the entire respiratory complex i from thermus2 thermophilus
7c3rkoL_



87.2 15
PDB header:oxidoreductase
Chain: L: PDB Molecule:nadh-quinone oxidoreductase subunit l;
PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution
8c5ldwL_



73.9 12
PDB header:oxidoreductase
Chain: L: PDB Molecule:nadh-ubiquinone oxidoreductase chain 5;
PDBTitle: structure of mammalian respiratory complex i, class1
9c6gcs5_



65.3 18
PDB header:oxidoreductase
Chain: 5: PDB Molecule:nd5 subunit (nu5m);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
10c6gcs4_



61.7 16
PDB header:oxidoreductase
Chain: 4: PDB Molecule:nd4 subunit (nu4m);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
11c6humF_



57.4 11
PDB header:proton transport
Chain: F: PDB Molecule:nadh dehydrogenase subunit 5;
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
12c6g2jL_



54.1 17
PDB header:oxidoreductase
Chain: L: PDB Molecule:nadh-ubiquinone oxidoreductase chain 5;
PDBTitle: mouse mitochondrial complex i in the active state
13c1q2iA_



47.4 44
PDB header:antitumor protein
Chain: A: PDB Molecule:pnc27;
PDBTitle: nmr solution structure of a peptide from the mdm-2 binding2 domain of the p53 protein that is selectively cytotoxic to3 cancer cells
14c6gcs2_



43.6 12
PDB header:oxidoreductase
Chain: 2: PDB Molecule:nd2 subunit (nu2m);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
15c5ldwN_



32.1 12
PDB header:oxidoreductase
Chain: N: PDB Molecule:nadh-ubiquinone oxidoreductase chain 2;
PDBTitle: structure of mammalian respiratory complex i, class1
16c4he8I_



30.1 21
PDB header:oxidoreductase
Chain: I: PDB Molecule:nadh-quinone oxidoreductase subunit 14;
PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 thermus thermophilus
17c6o7ua_



27.5 13
PDB header:membrane protein
Chain: A: PDB Molecule:
PDBTitle: saccharomyces cerevisiae v-atpase stv1-vo
18c2jpkA_



26.9 28
PDB header:antimicrobial protein
Chain: A: PDB Molecule:bacteriocin lactococcin-g subunit beta;
PDBTitle: lactococcin g-b in dpc
19d1xn8a_



26.8 21
Fold:Hypothetical protein YqbG
Superfamily:Hypothetical protein YqbG
Family:Hypothetical protein YqbG
20d1lbqa_



24.3 18
Fold:Chelatase-like
Superfamily:Chelatase
Family:Ferrochelatase
21c2jpmA_



not modelled 24.2 28
PDB header:antimicrobial protein
Chain: A: PDB Molecule:bacteriocin lactococcin-g subunit beta;
PDBTitle: lactococcin g-b in tfe
22c5xtdi_



not modelled 19.0 13
PDB header:oxidoreductase/electron transport
Chain: I: PDB Molecule:nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
PDBTitle: cryo-em structure of human respiratory complex i
23c5ncaA_



not modelled 14.6 13
PDB header:structural protein
Chain: A: PDB Molecule:competence protein comgc;
PDBTitle: solution structure of comgc from streptococcus pneumoniae
24c6cfwH_



not modelled 14.0 15
PDB header:membrane protein
Chain: H: PDB Molecule:monovalent cation/h+ antiporter subunit d;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
25c3lygA_



not modelled 13.7 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ntf2-like protein of unknown function;
PDBTitle: crystal structure of ntf2-like protein of unknown function2 (yp_270605.1) from colwellia psychrerythraea 34h at 1.61 a resolution
26c6g2jN_



not modelled 12.2 18
PDB header:oxidoreductase
Chain: N: PDB Molecule:nadh-ubiquinone oxidoreductase chain 2;
PDBTitle: mouse mitochondrial complex i in the active state
27c5yq7L_



not modelled 12.1 24
PDB header:photosynthesis
Chain: L: PDB Molecule:precursor for l subunits of photosynthetic reaction center;
PDBTitle: cryo-em structure of the rc-lh core complex from roseiflexus2 castenholzii
28d1eysm_



not modelled 11.8 24
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
29d2i5nl1



not modelled 11.5 22
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
30d2j8cm1



not modelled 11.0 22
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
31c2k8fB_



not modelled 9.6 25
PDB header:transferase/transcription
Chain: B: PDB Molecule:cellular tumor antigen p53;
PDBTitle: structural basis for the regulation of p53 function by p300
32c6humB_



not modelled 9.4 11
PDB header:proton transport
Chain: B: PDB Molecule:nad(p)h-quinone oxidoreductase subunit 2;
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
33c5ldwM_



not modelled 9.3 12
PDB header:oxidoreductase
Chain: M: PDB Molecule:nadh-ubiquinone oxidoreductase chain 4;
PDBTitle: structure of mammalian respiratory complex i, class1
34d2ahua1



not modelled 9.0 20
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase beta subunit-like
35d2i5nm1



not modelled 8.8 27
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
36d2axta1



not modelled 8.7 29
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
37d2j8cl1



not modelled 7.6 32
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
38d2hrca1



not modelled 7.6 23
Fold:Chelatase-like
Superfamily:Chelatase
Family:Ferrochelatase
39c2lweA_



not modelled 7.3 4
PDB header:signaling protein
Chain: A: PDB Molecule:probable atp-dependent rna helicase ddx58;
PDBTitle: solution structure of mutant (t170e) second card of human rig-i
40c2vxsB_



not modelled 7.2 18
PDB header:cytokine
Chain: B: PDB Molecule:interleukin-17a;
PDBTitle: structure of il-17a in complex with a potent, fully human2 neutralising antibody
41d2axtd1



not modelled 6.8 27
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
42c2dgrA_



not modelled 6.5 20
PDB header:rna binding protein
Chain: A: PDB Molecule:ring finger and kh domain-containing protein 1;
PDBTitle: solution structure of the second kh domain in ring finger2 and kh domain containing protein 1
43c3dpgA_



not modelled 6.2 47
PDB header:hydrolase/dna
Chain: A: PDB Molecule:sgrair restriction enzyme;
PDBTitle: sgrai with noncognate dna bound
44d1un8a4



not modelled 5.9 22
Fold:DAK1/DegV-like
Superfamily:DAK1/DegV-like
Family:DAK1
45d1l9bm_



not modelled 5.9 22
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
46d1eysl_



not modelled 5.9 24
Fold:Bacterial photosystem II reaction centre, L and M subunits
Superfamily:Bacterial photosystem II reaction centre, L and M subunits
Family:Bacterial photosystem II reaction centre, L and M subunits
47d2hk6a1



not modelled 5.9 27
Fold:Chelatase-like
Superfamily:Chelatase
Family:Ferrochelatase
48c2rmrA_



not modelled 5.8 21
PDB header:transcription
Chain: A: PDB Molecule:paired amphipathic helix protein sin3a;
PDBTitle: solution structure of msin3a pah1 domain
49c2dbhA_



not modelled 5.4 23
PDB header:signaling protein
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily
PDBTitle: solution structure of the carboxyl-terminal card-like2 domain in human tnfr-related death receptor-6
50c4q2uM_



not modelled 5.1 21
PDB header:toxin/toxin repressor
Chain: M: PDB Molecule:antitoxin dinj;
PDBTitle: crystal structure of the e. coli dinj-yafq toxin-antitoxin complex
51c2eqeA_



not modelled 5.1 57
PDB header:hydrolase
Chain: A: PDB Molecule:tumor necrosis factor, alpha-induced protein 3;
PDBTitle: solution structure of the fourth a20-type zinc finger2 domain from human tumor necrosis factor, alpha-induced3 protein3

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Transmembrane helix prediction 

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