Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0090_(-)_98477_99247
DateTue Jul 23 14:50:12 BST 2019
Unique Job ID1494ffdd3687c3fa
SequenceVAKNQNRIRN ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:19.008 Y:24.548 Z:31.676
Model (left) based on template c2hr5B_
Top template information
PDB header:metal binding protein
Chain: B: PDB Molecule:rubrerythrin;
PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form
Confidence and coverage
Confidence: 42.4% Coverage: 12%
31 residues ( 12% of your sequence) have been modelled with 42.4% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2hr5B_
42.4 23
PDB header:metal binding protein
Chain: B: PDB Molecule:rubrerythrin;
PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form
2c5xknF_
40.0 67
PDB header:transferase/signaling protein
Chain: F: PDB Molecule:epidermal patterning factor-like protein 4;
PDBTitle: crystal structure of plant receptor erl2 in complexe with epfl4
3c5xknE_
40.0 67
PDB header:transferase/signaling protein
Chain: E: PDB Molecule:epidermal patterning factor-like protein 4;
PDBTitle: crystal structure of plant receptor erl2 in complexe with epfl4
4c6btmD_
38.4 24
PDB header:membrane protein
Chain: D: PDB Molecule:alternative complex iii subunit d;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
5d2dipa1
35.5 29
Fold:RING/U-box
Superfamily:RING/U-box
Family:ZZ domain
6c2e5rA_
33.2 33
PDB header:dna binding protein
Chain: A: PDB Molecule:dystrobrevin alpha;
PDBTitle: solution structure of the zz domain of dystrobrevin alpha2 (dystrobrevin-alpha)
7c6mj7A_
30.6 36
PDB header:signaling protein
Chain: A: PDB Molecule:sequestosome-1;
PDBTitle: crystal structure of p62 zz domain in complex with free arginine
8c2lvhA_
28.6 75
PDB header:metal binding protein
Chain: A: PDB Molecule:putative zinc finger protein orf59a;
PDBTitle: solution structure of the zinc finger afv1p06 protein from the2 hyperthermophilic archaeal virus afv1
9c5ypeD_
27.4 36
PDB header:signaling protein
Chain: D: PDB Molecule:78 kda glucose-regulated protein,sequestosome-1;
PDBTitle: p62/sqstm1 zz domain with tyr-peptide
10d2d8xa2
25.8 50
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
11d1gtea1
25.8 60
Fold:Globin-like
Superfamily:alpha-helical ferredoxin
Family:Dihydropyrimidine dehydrogenase, N-terminal domain
12c1yuzB_
24.7 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:nigerythrin;
PDBTitle: partially reduced state of nigerythrin
13d1f16a_
23.0 16
Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
14d1tota1
22.3 36
Fold:RING/U-box
Superfamily:RING/U-box
Family:ZZ domain
15c1totA_
22.3 36
PDB header:transferase
Chain: A: PDB Molecule:creb-binding protein;
PDBTitle: zz domain of cbp- a novel fold for a protein interaction2 module
16c2jd3B_
22.0 23
PDB header:dna binding protein
Chain: B: PDB Molecule:stbb protein;
PDBTitle: parr from plasmid pb171
17c6cw3G_
21.8 21
PDB header:gene regulation
Chain: G: PDB Molecule:transcriptional adapter 2;
PDBTitle: crystal structure of a yeast saga transcriptional coactivator2 ada2/gcn5 hat subcomplex, crystal form 2
18d1dxga_
18.7 32
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Desulforedoxin
19d1a6ca3
17.4 29
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Comoviridae-like VP
20d1yuza2
17.3 18
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
21d2fc7a1
not modelled 17.1 33
Fold:RING/U-box
Superfamily:RING/U-box
Family:ZZ domain
22d3e9va1
not modelled 16.7 36
Fold:BTG domain-like
Superfamily:BTG domain-like
Family:BTG domain-like
23d2z15a1
not modelled 14.9 36
Fold:BTG domain-like
Superfamily:BTG domain-like
Family:BTG domain-like
24c1dvbA_
not modelled 14.9 30
PDB header:electron transport
Chain: A: PDB Molecule:rubrerythrin;
PDBTitle: rubrerythrin
25d1e5qa2
not modelled 14.2 18
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Homoserine dehydrogenase-like
26d2idaa1
not modelled 13.9 14
Fold:RING/U-box
Superfamily:RING/U-box
Family:Zf-UBP
27c4xi7A_
not modelled 13.9 33
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase mib1;
PDBTitle: crystal structure of the mzm-rep domains of mind bomb 1 in complex2 with jagged1 n-box peptide
28d1p1da1
not modelled 13.3 29
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
29c3rv2B_
not modelled 13.0 64
PDB header:transferase
Chain: B: PDB Molecule:s-adenosylmethionine synthase;
PDBTitle: crystal structure of s-adenosylmethionine synthetase from2 mycobacterium marinum
30d2h3la1
not modelled 12.9 25
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
31c6cfwI_
not modelled 12.5 32
PDB header:membrane protein
Chain: I: PDB Molecule:mbh subunit;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
32c2m6oA_
not modelled 11.4 44
PDB header:transcription
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the actinobacterial transcription factor rbpa binds to the principal2 sigma subunit of rna polymerase
33d1ej5a_
not modelled 11.4 10
Fold:Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
Superfamily:Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
Family:Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
34d1lkoa2
not modelled 11.3 31
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
35c3admC_
not modelled 11.2 56
PDB header:structural protein
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)4-hyp-ser-gly-(pro-pro-gly)4
36c2i50A_
not modelled 11.1 30
PDB header:hydrolase
Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 16;
PDBTitle: solution structure of ubp-m znf-ubp domain
37c3admD_
not modelled 11.1 56
PDB header:structural protein
Chain: D: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)4-hyp-ser-gly-(pro-pro-gly)4
38c4le5A_
not modelled 10.9 9
PDB header:transferase
Chain: A: PDB Molecule:s-adenosylmethionine synthetase;
PDBTitle: structure of an unusual s-adenosylmethionine synthetase from2 campylobacter jejuni
39c3eggC_
not modelled 10.9 24
PDB header:hydrolase
Chain: C: PDB Molecule:spinophilin;
PDBTitle: crystal structure of a complex between protein phosphatase 1 alpha2 (pp1) and the pp1 binding and pdz domains of spinophilin
40c1fi8F_
not modelled 10.7 36
PDB header:hydrolase/hydrolase inhibitor
Chain: F: PDB Molecule:ecotin;
PDBTitle: rat granzyme b [n66q] complexed to ecotin [81-84 iepd]
41c6c04J_
not modelled 10.7 50
PDB header:transcription/dna
Chain: J: PDB Molecule:rna polymerase-binding protein rbpa;
PDBTitle: mtb rnap holo/rbpa/double fork dna -closed clamp
42c2n1pA_
not modelled 10.5 14
PDB header:viral protein
Chain: A: PDB Molecule:non-structural protein 5b, ns5b;
PDBTitle: structure of the c-terminal membrane domain of hcv ns5b protein
43c3admF_
not modelled 10.5 56
PDB header:structural protein
Chain: F: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)4-hyp-ser-gly-(pro-pro-gly)4
44c3admA_
not modelled 10.5 56
PDB header:structural protein
Chain: A: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)4-hyp-ser-gly-(pro-pro-gly)4
45c3admE_
not modelled 10.5 56
PDB header:structural protein
Chain: E: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)4-hyp-ser-gly-(pro-pro-gly)4
46c3admB_
not modelled 10.5 56
PDB header:structural protein
Chain: B: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)4-hyp-ser-gly-(pro-pro-gly)4
47c3so4C_
not modelled 10.1 55
PDB header:transferase
Chain: C: PDB Molecule:methionine-adenosyltransferase;
PDBTitle: methionine-adenosyltransferase from entamoeba histolytica
48c2l9zA_
not modelled 10.0 43
PDB header:transcription
Chain: A: PDB Molecule:pr domain zinc finger protein 4;
PDBTitle: zinc knuckle in prdm4
49d1ibia1
not modelled 9.8 56
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
50c5h67C_
not modelled 9.7 19
PDB header:dna binding protein/cell cycle
Chain: C: PDB Molecule:segregation and condensation protein a;
PDBTitle: crystal structure of the bacillus subtilis smc head domain complexed2 with the cognate scpa c-terminal domain and soaked atp
51c5tw1J_
not modelled 9.5 50
PDB header:transcription activator/transferase/dna
Chain: J: PDB Molecule:rna polymerase-binding protein rbpa;
PDBTitle: crystal structure of a mycobacterium smegmatis transcription2 initiation complex with rbpa
52c2m4vA_
not modelled 9.4 50
PDB header:transcription
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: mycobacterium tuberculosis rna polymerase binding protein a (rbpa) and2 its interactions with sigma factors
53c5kzoA_
not modelled 9.3 30
PDB header:transcription
Chain: A: PDB Molecule:neurogenic locus notch homolog protein 1;
PDBTitle: notch1 transmembrane and associated juxtamembrane segment
54d1nnqa2
not modelled 9.3 26
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
55c3upsA_
not modelled 9.1 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:iojap-like protein;
PDBTitle: crystal structure of iojap-like protein from zymomonas mobilis
56c2jr7A_
not modelled 9.0 44
PDB header:metal binding protein
Chain: A: PDB Molecule:dph3 homolog;
PDBTitle: solution structure of human desr1
57c3zf7o_
not modelled 9.0 26
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l13a, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
58c3imlB_
not modelled 8.9 64
PDB header:transferase
Chain: B: PDB Molecule:s-adenosylmethionine synthetase;
PDBTitle: crystal structure of s-adenosylmethionine synthetase from burkholderia2 pseudomallei
59d2g45a1
not modelled 8.9 25
Fold:RING/U-box
Superfamily:RING/U-box
Family:Zf-UBP
60d1vaea_
not modelled 8.7 12
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
61d1x45a1
not modelled 8.6 24
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
62d1ny722
not modelled 8.5 71
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Comoviridae-like VP
63c1gthD_
not modelled 8.5 60
PDB header:oxidoreductase
Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase;
PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary complex with2 nadph and 5-iodouracil
64d1dfxa2
not modelled 8.4 29
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Desulforedoxin
65c5ejcD_
not modelled 8.4 36
PDB header:signaling protein
Chain: D: PDB Molecule:hamartin;
PDBTitle: crystal structural of the tsc1-tbc1d7 complex
66d2uzga1
not modelled 8.2 22
Fold:RING/U-box
Superfamily:RING/U-box
Family:Zf-UBP
67c3izrm_
not modelled 8.2 29
PDB header:ribosome
Chain: M: PDB Molecule:60s ribosomal protein l23 (l14p);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
68d2o5aa1
not modelled 8.2 19
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:Iojap/YbeB-like
69d1pgl22
not modelled 8.0 57
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Comoviridae-like VP
70c5uz4Z_
not modelled 7.9 29
PDB header:ribosome/hydrolase
Chain: Z: PDB Molecule:small ribosomal subunit biogenesis gtpase rsga;
PDBTitle: the cryo-em structure of yjeq bound to the 30s subunit suggests a2 fidelity checkpoint function for this protein in ribosome assembly
71c5h9uC_
not modelled 7.9 55
PDB header:transferase
Chain: C: PDB Molecule:s-adenosylmethionine synthase;
PDBTitle: crystal structure of a thermostable methionine adenosyltransferase
72c2obvA_
not modelled 7.9 64
PDB header:transferase
Chain: A: PDB Molecule:s-adenosylmethionine synthetase isoform type-1;
PDBTitle: crystal structure of the human s-adenosylmethionine synthetase 1 in2 complex with the product
73d1xera_
not modelled 7.8 19
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Archaeal ferredoxins
74c4odjA_
not modelled 7.8 45
PDB header:transferase
Chain: A: PDB Molecule:s-adenosylmethionine synthase;
PDBTitle: crystal structure of a putative s-adenosylmethionine synthetase from2 cryptosporidium hominis in complex with s-adenosyl-methionine
75c6fb3A_
not modelled 7.7 45
PDB header:cell adhesion
Chain: A: PDB Molecule:teneurin-2;
PDBTitle: teneurin 2 partial extracellular domain
76c2k2jA_
not modelled 7.7 14
PDB header:hydrolase, signaling protein
Chain: A: PDB Molecule:1-phosphatidylinositol-4,5-bisphosphate
PDBTitle: nmr solution structure of the split ph domain from2 phospholipase c gamma 2
77d6rxna_
not modelled 7.6 29
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Rubredoxin
78d1wifa_
not modelled 7.5 24
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
79c5oomu_
not modelled 7.4 14
PDB header:ribosome
Chain: U: PDB Molecule:39s ribosomal protein l23, mitochondrial;
PDBTitle: structure of a native assembly intermediate of the human mitochondrial2 ribosome with unfolded interfacial rrna
80c4b6ap_
not modelled 7.3 26
PDB header:ribosome
Chain: P: PDB Molecule:60s ribosomal protein l17-a;
PDBTitle: cryo-em structure of the 60s ribosomal subunit in complex2 with arx1 and rei1
81c5lrvA_
not modelled 7.3 67
PDB header:hydrolase
Chain: A: PDB Molecule:otu domain-containing protein 7b;
PDBTitle: structure of cezanne/otud7b otu domain bound to lys11-linked2 diubiquitin
82c6fkip_
not modelled 7.2 6
PDB header:membrane protein
Chain: P: PDB Molecule:atp synthase subunit c, chloroplastic;
PDBTitle: chloroplast f1fo conformation 3
83c2yt7A_
not modelled 7.2 29
PDB header:protein transport
Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding family
PDBTitle: solution structure of the pdz domain of amyloid beta a42 precursor protein-binding family a member 3
84d1b8qa_
not modelled 7.2 24
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
85c3ziaT_
not modelled 7.1 24
PDB header:hydrolase
Chain: T: PDB Molecule:atpase inhibitor, mitochondrial;
PDBTitle: the structure of f1-atpase from saccharomyces cerevisiae inhibited by2 its regulatory protein if1
86c3ziaJ_
not modelled 7.1 24
PDB header:hydrolase
Chain: J: PDB Molecule:atpase inhibitor, mitochondrial;
PDBTitle: the structure of f1-atpase from saccharomyces cerevisiae inhibited by2 its regulatory protein if1
87c2qneA_
not modelled 7.0 8
PDB header:transferase
Chain: A: PDB Molecule:putative methyltransferase;
PDBTitle: crystal structure of putative methyltransferase (zp_00558420.1) from2 desulfitobacterium hafniense y51 at 2.30 a resolution
88d1btna_
not modelled 6.9 17
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Pleckstrin-homology domain (PH domain)
89d1n7ea_
not modelled 6.9 35
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:PDZ domain
90c2vsvB_
not modelled 6.9 18
PDB header:protein binding
Chain: B: PDB Molecule:rhophilin-2;
PDBTitle: crystal structure of the pdz domain of human rhophilin-2
91c2qbwA_
not modelled 6.8 24
PDB header:unknown function
Chain: A: PDB Molecule:pdz-fibronectin fusion protein;
PDBTitle: the crystal structure of pdz-fibronectin fusion protein
92c6k0bH_
not modelled 6.8 33
PDB header:rna binding protein/rna
Chain: H: PDB Molecule:ribonuclease p protein component 4;
PDBTitle: cryo-em structure of archaeal ribonuclease p with mature trna
93c2hqlB_
not modelled 6.7 44
PDB header:dna binding protein
Chain: B: PDB Molecule:hypothetical protein mg376 homolog;
PDBTitle: crystal structure of a small single-stranded dna binding2 protein from mycoplasma pneumoniae
94d1zaka2
not modelled 6.7 40
Fold:Rubredoxin-like
Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain
Family:Microbial and mitochondrial ADK, insert "zinc finger" domain
95d2ijqa1
not modelled 6.7 16
Fold:Hyaluronidase domain-like
Superfamily:TTHA0068-like
Family:TTHA0068-like
96c3ggeA_
not modelled 6.6 18
PDB header:protein binding
Chain: A: PDB Molecule:pdz domain-containing protein gipc2;
PDBTitle: crystal structure of the pdz domain of pdz domain-containing protein2 gipc2
97c2vwrA_
not modelled 6.5 24
PDB header:protein binding
Chain: A: PDB Molecule:ligand of numb protein x 2;
PDBTitle: crystal structure of the second pdz domain of numb-binding protein 2
98c1u39A_
not modelled 6.5 24
PDB header:protein transport
Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding,
PDBTitle: auto-inhibition mechanism of x11s/mints family scaffold2 proteins revealed by the closed conformation of the tandem3 pdz domains
99c4wcwB_
not modelled 6.4 19
PDB header:translation
Chain: B: PDB Molecule:ribosomal silencing factor rsfs;
PDBTitle: ribosomal silencing factor during starvation or stationary phase2 (rsfs) from mycobacterium tuberculosis

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below