Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0095c_(-)_104802_105212
DateTue Jul 23 14:50:13 BST 2019
Unique Job ID401f468160b915b2
SequenceVRYLPVSTRR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:27.674 Y:31.840 Z:33.489
Model (left) based on template c5hsbA_
Top template information
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase;
PDBTitle: andes virus endonuclease
Confidence and coverage
Confidence: 58.8% Coverage: 33%
45 residues ( 33% of your sequence) have been modelled with 58.8% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5hsbA_



58.8 24
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase;
PDBTitle: andes virus endonuclease
2c4bgoA_



53.1 16
PDB header:hydrolase
Chain: A: PDB Molecule:efem m75 peptidase;
PDBTitle: structural and functional role of the imelysin-like protein2 efem from pseudomonas syringae pv. syringae and3 implications in bacterial iron transport
3c5tw9D_



38.2 25
PDB header:lipid-binding protein
Chain: D: PDB Molecule:iron uptake system component efeo;
PDBTitle: 1.50 angstrom crystal structure of c-terminal fragment (residues 322-2 384) of iron uptake system component efeo from yersinia pestis.
4c3at7B_



33.2 22
PDB header:structural protein
Chain: B: PDB Molecule:alginate-binding flagellin;
PDBTitle: crystal structure of bacterial cell-surface alginate-binding protein2 algp7
5c3udiA_



31.4 21
PDB header:penicillin-binding protein/antibiotic
Chain: A: PDB Molecule:penicillin-binding protein 1a;
PDBTitle: crystal structure of acinetobacter baumannii pbp1a in complex with2 penicillin g
6c4widA_



28.4 24
PDB header:viral protein
Chain: A: PDB Molecule:rhul123;
PDBTitle: crystal structure of the immediate-early 1 protein (ie1) at 2.312 angstrom (tetragonal form after crystal dehydration)
7c3zljD_



24.9 21
PDB header:dna binding protein/dna
Chain: D: PDB Molecule:dna mismatch repair protein muts;
PDBTitle: crystal structure of full-length e.coli dna mismatch repair protein2 muts d835r mutant in complex with gt mismatched dna
8c3zljC_



24.9 21
PDB header:dna binding protein/dna
Chain: C: PDB Molecule:dna mismatch repair protein muts;
PDBTitle: crystal structure of full-length e.coli dna mismatch repair protein2 muts d835r mutant in complex with gt mismatched dna
9c1kyqC_



20.4 28
PDB header:oxidoreductase, lyase
Chain: C: PDB Molecule:siroheme biosynthesis protein met8;
PDBTitle: met8p: a bifunctional nad-dependent dehydrogenase and2 ferrochelatase involved in siroheme synthesis.
10c5nz8A_



19.8 25
PDB header:hydrolase
Chain: A: PDB Molecule:cellodextrin phosphorylase;
PDBTitle: clostridium thermocellum cellodextrin phosphorylase with cellotetraose2 and phosphate bound
11c6d0gA_



19.5 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:pirin family protein;
PDBTitle: 1.78 angstrom resolution crystal structure of quercetin 2,3-2 dioxygenase from acinetobacter baumannii
12c3ke3A_



19.0 7
PDB header:transferase
Chain: A: PDB Molecule:putative serine-pyruvate aminotransferase;
PDBTitle: crystal structure of putative serine-pyruvate aminotransferase2 (yp_263484.1) from psychrobacter arcticum 273-4 at 2.20 a resolution
13c3f5hB_



17.3 38
PDB header:protein binding
Chain: B: PDB Molecule:type i polyketide synthase pikaiii, type i polyketide
PDBTitle: crystal structure of fused docking domains from pikaiii and pikaiv of2 the pikromycin polyketide synthase
14c3gtzA_



15.0 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative translation initiation inhibitor;
PDBTitle: crystal structure of a putative translation initiation inhibitor from2 salmonella typhimurium
15d1u2ca2



14.4 14
Fold:Dystroglycan, domain 2
Superfamily:Dystroglycan, domain 2
Family:Dystroglycan, domain 2
16d1j1la_



14.2 18
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Pirin-like
17c2ak0A_



13.6 43
PDB header:toxin
Chain: A: PDB Molecule:alpha-conotoxin mii;
PDBTitle: structure of cyclic conotoxin mii-7
18c3iwkB_



13.5 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:aminoaldehyde dehydrogenase;
PDBTitle: crystal structure of aminoaldehyde dehydrogenase 1 from pisum sativum2 (psamadh1)
19c5o8kB_



11.9 38
PDB header:replication
Chain: B: PDB Molecule:dna polymerase zeta catalytic subunit;
PDBTitle: crystal structure of mammalian rev7 in complex with rev3 1875-1895
20d1rcwa_



11.7 17
Fold:Heme oxygenase-like
Superfamily:Heme oxygenase-like
Family:PqqC-like
21c2yb5F_



not modelled 11.7 14
PDB header:translation
Chain: F: PDB Molecule:putative fusidic acid resistance protein;
PDBTitle: structure of the fusidic acid resistance protein fusc
22c3u24A_



not modelled 11.4 15
PDB header:lipid binding protein
Chain: A: PDB Molecule:putative lipoprotein;
PDBTitle: the structure of a putative lipoprotein of unknown function from2 shewanella oneidensis.
23c1aq5C_



not modelled 11.4 24
PDB header:coiled-coil
Chain: C: PDB Molecule:cartilage matrix protein;
PDBTitle: high-resolution solution nmr structure of the trimeric coiled-coil2 domain of chicken cartilage matrix protein, 20 structures
24c1aq5B_



not modelled 11.4 24
PDB header:coiled-coil
Chain: B: PDB Molecule:cartilage matrix protein;
PDBTitle: high-resolution solution nmr structure of the trimeric coiled-coil2 domain of chicken cartilage matrix protein, 20 structures
25c3jrzA_



not modelled 11.3 33
PDB header:toxin
Chain: A: PDB Molecule:ccdb;
PDBTitle: ccdbvfi-formii-ph5.6
26c3korD_



not modelled 10.7 13
PDB header:transcription
Chain: D: PDB Molecule:possible trp repressor;
PDBTitle: crystal structure of a putative trp repressor from staphylococcus2 aureus
27d3vuba_



not modelled 10.3 7
Fold:SH3-like barrel
Superfamily:Cell growth inhibitor/plasmid maintenance toxic component
Family:CcdB
28c4q76B_



not modelled 10.3 12
PDB header:transferase
Chain: B: PDB Molecule:cysteine desulfurase 2, chloroplastic;
PDBTitle: crystal structure of nfs2 c384s mutant, the plastidial cysteine2 desulfurase from arabidopsis thaliana
29c5eurC_



not modelled 10.1 23
PDB header:unknown function
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: hypothetical protein sf216 from shigella flexneri 5a m90t
30c2wwaJ_



not modelled 10.0 29
PDB header:ribosome
Chain: J: PDB Molecule:60s ribosomal protein l19;
PDBTitle: cryo-em structure of idle yeast ssh1 complex bound to the yeast 80s2 ribosome
31c4fjoD_



not modelled 10.0 46
PDB header:transferase/dna binding protein
Chain: D: PDB Molecule:dna polymerase zeta catalytic subunit;
PDBTitle: structure of the rev1 ctd-rev3/7-pol kappa rir complex
32c1hymB_



not modelled 9.8 100
PDB header:hydrolase (serine proteinase)
Chain: B: PDB Molecule:hydrolyzed cucurbita maxima trypsin inhibitor v;
PDBTitle: hydrolyzed trypsin inhibitor (cmti-v, minimized average nmr structure)
33d2cg4a1



not modelled 9.8 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
34c3soyA_



not modelled 9.4 15
PDB header:membrane protein
Chain: A: PDB Molecule:ntf2-like superfamily protein;
PDBTitle: nuclear transport factor 2 (ntf2-like) superfamily protein from2 salmonella enterica subsp. enterica serovar typhimurium str. lt2
35c3abdY_



not modelled 9.3 38
PDB header:cell cycle/replication
Chain: Y: PDB Molecule:dna polymerase zeta catalytic subunit;
PDBTitle: structure of human rev7 in complex with a human rev3 fragment in a2 monoclinic crystal
36c3abdX_



not modelled 9.3 36
PDB header:cell cycle/replication
Chain: X: PDB Molecule:dna polymerase zeta catalytic subunit;
PDBTitle: structure of human rev7 in complex with a human rev3 fragment in a2 monoclinic crystal
37c3on4D_



not modelled 9.1 14
PDB header:transcription
Chain: D: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of tetr transcriptional regulator from legionella2 pneumophila
38c4aoaA_



not modelled 9.0 10
PDB header:transferase
Chain: A: PDB Molecule:beta-phenylalanine aminotransferase;
PDBTitle: biochemical properties and crystal structure of a novel2 beta-phenylalanine aminotransferase from variovorax3 paradoxus
39c5aa6F_



not modelled 8.7 19
PDB header:oxidoreductase
Chain: F: PDB Molecule:vanadium-dependent bromoperoxidase 2;
PDBTitle: homohexameric structure of the second vanadate-dependent2 bromoperoxidase (anii) from ascophyllum nodosum
40c3zeyU_



not modelled 8.7 26
PDB header:ribosome
Chain: U: PDB Molecule:40s ribosomal protein s25, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
41c3t0yA_



not modelled 8.6 17
PDB header:transcription regulator/protein binding
Chain: A: PDB Molecule:response regulator;
PDBTitle: structure of the phyr anti-anti-sigma domain bound to the anti-sigma2 factor, nepr
42c4gk5C_



not modelled 8.3 45
PDB header:transferase
Chain: C: PDB Molecule:dna polymerase zeta catalytic subunit;
PDBTitle: crystal structure of human rev3-rev7-rev1-polkappa complex
43c4gk0C_



not modelled 8.3 45
PDB header:transferase
Chain: C: PDB Molecule:dna polymerase zeta catalytic subunit;
PDBTitle: crystal structure of human rev3-rev7-rev1 complex
44c4gk0D_



not modelled 8.3 45
PDB header:transferase
Chain: D: PDB Molecule:dna polymerase zeta catalytic subunit;
PDBTitle: crystal structure of human rev3-rev7-rev1 complex
45c4gk5D_



not modelled 8.3 45
PDB header:transferase
Chain: D: PDB Molecule:dna polymerase zeta catalytic subunit;
PDBTitle: crystal structure of human rev3-rev7-rev1-polkappa complex
46c2ajwA_



not modelled 8.1 38
PDB header:toxin
Chain: A: PDB Molecule:alpha-conotoxin mii;
PDBTitle: structure of the cyclic conotoxin mii-6
47c6d0pC_



not modelled 8.0 17
PDB header:oxidoreductase
Chain: C: PDB Molecule:pirin family protein;
PDBTitle: 1.88 angstrom resolution crystal structure of quercetin 2,3-2 dioxygenase from acinetobacter baumannii
48c5mk5A_



not modelled 7.9 14
PDB header:hydrolase
Chain: A: PDB Molecule:bloom syndrome protein;
PDBTitle: structures of dhbn domain of human blm helicase
49c6c52A_



not modelled 7.9 50
PDB header:de novo protein
Chain: A: PDB Molecule:cross-alpha amyloid-like structure alphatet;
PDBTitle: cross-alpha amyloid-like structure alphatet
50c6c52C_



not modelled 7.9 50
PDB header:de novo protein
Chain: C: PDB Molecule:cross-alpha amyloid-like structure alphatet;
PDBTitle: cross-alpha amyloid-like structure alphatet
51c6c52D_



not modelled 7.9 50
PDB header:de novo protein
Chain: D: PDB Molecule:cross-alpha amyloid-like structure alphatet;
PDBTitle: cross-alpha amyloid-like structure alphatet
52c6c52B_



not modelled 7.9 50
PDB header:de novo protein
Chain: B: PDB Molecule:cross-alpha amyloid-like structure alphatet;
PDBTitle: cross-alpha amyloid-like structure alphatet
53c3i3fB_



not modelled 7.8 12
PDB header:unknown function
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: hypothetical protein from giardia lamblia gl50803_14299
54c1zb7A_



not modelled 7.8 30
PDB header:toxin
Chain: A: PDB Molecule:neurotoxin;
PDBTitle: crystal structure of botulinum neurotoxin type g light chain
55c5x9kA_



not modelled 7.7 14
PDB header:isomerase
Chain: A: PDB Molecule:austinol synthesis protein h;
PDBTitle: strucutre of aush from aspergillus nidulans
56c4eb5B_



not modelled 7.7 23
PDB header:transferase/metal binding protein
Chain: B: PDB Molecule:probable cysteine desulfurase 2;
PDBTitle: a. fulgidus iscs-iscu complex structure
57c5mu4A_



not modelled 7.7 18
PDB header:viral protein
Chain: A: PDB Molecule:tail tubular protein a;
PDBTitle: tail tubular protein a of klebsiella pneumoniae bacteriophage kp32
58c3njqB_



not modelled 7.7 21
PDB header:viral protein/inhibitor
Chain: B: PDB Molecule:orf 17;
PDBTitle: crystal structure of kaposi's sarcoma-associated herpesvirus protease2 in complex with dimer disruptor
59c3k12F_



not modelled 7.6 5
PDB header:structural genomics, unknown function
Chain: F: PDB Molecule:uncharacterized protein a6v7t0;
PDBTitle: crystal structure of an uncharacterized protein a6v7t0 from2 pseudomonas aeruginosa
60d1f6fa_



not modelled 7.6 26
Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Long-chain cytokines
61c5gzhA_



not modelled 7.5 12
PDB header:hydrolase
Chain: A: PDB Molecule:endo-beta-1,2-glucanase;
PDBTitle: endo-beta-1,2-glucanase from chitinophaga pinensis - ligand free form
62c3iz6V_



not modelled 7.4 32
PDB header:ribosome
Chain: V: PDB Molecule:40s ribosomal protein s25 (s25e);
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
63c3izbV_



not modelled 7.4 26
PDB header:ribosome
Chain: V: PDB Molecule:40s ribosomal protein rps25 (s25e);
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
64c2cy8A_



not modelled 7.4 20
PDB header:transferase
Chain: A: PDB Molecule:d-phenylglycine aminotransferase;
PDBTitle: crystal structure of d-phenylglycine aminotransferase (d-phgat) from2 pseudomonas strutzeri st-201
65c4go1A_



not modelled 7.3 20
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator lsrr;
PDBTitle: crystal structure of full length transcription repressor lsrr from e.2 coli.
66c3abeZ_



not modelled 7.1 45
PDB header:cell cycle/replication
Chain: Z: PDB Molecule:dna polymerase zeta catalytic subunit;
PDBTitle: structure of human rev7 in complex with a human rev3 fragment in a2 tetragonal crystal
67c3vprA_



not modelled 6.9 18
PDB header:dna binding protein
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of a tetr family transcriptional regulator pfmr from2 thermus thermophilus hb8
68c4adoA_



not modelled 6.8 15
PDB header:antibiotic resistance
Chain: A: PDB Molecule:far1;
PDBTitle: fusidic acid resistance protein fusb
69c2xgyA_



not modelled 6.7 29
PDB header:viral protein/isomerase
Chain: A: PDB Molecule:relik capsid n-terminal domain;
PDBTitle: complex of rabbit endogenous lentivirus (relik)capsid with2 cyclophilin a
70c1oheA_



not modelled 6.6 25
PDB header:hydrolase
Chain: A: PDB Molecule:cdc14b2 phosphatase;
PDBTitle: structure of cdc14b phosphatase with a peptide ligand
71c5n1wA_



not modelled 6.6 56
PDB header:cell cycle
Chain: A: PDB Molecule:xeco2;
PDBTitle: structure of xeco2 acetyltransferase domain bound to k105-coa2 conjugate
72c3rpdB_



not modelled 6.5 21
PDB header:transferase
Chain: B: PDB Molecule:methionine synthase (b12-independent);
PDBTitle: the structure of a b12-independent methionine synthase from shewanella2 sp. w3-18-1 in complex with selenomethionine.
73c3lv2A_



not modelled 6.5 8
PDB header:transferase
Chain: A: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
PDBTitle: crystal structure of mycobacterium tuberculosis 7,8-diaminopelargonic2 acid synthase in complex with substrate analog sinefungin
74d1saza1



not modelled 6.4 12
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Acetokinase-like
75c1or7A_



not modelled 6.4 18
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase sigma-e factor;
PDBTitle: crystal structure of escherichia coli sigmae with the cytoplasmic2 domain of its anti-sigma rsea
76c3vu7Z_



not modelled 6.4 45
PDB header:replication
Chain: Z: PDB Molecule:dna polymerase zeta catalytic subunit;
PDBTitle: crystal structure of rev1-rev7-rev3 ternary complex
77d1jwya1



not modelled 6.3 71
Fold:SH3-like barrel
Superfamily:Myosin S1 fragment, N-terminal domain
Family:Myosin S1 fragment, N-terminal domain
78c1t7lA_



not modelled 6.3 24
PDB header:transferase
Chain: A: PDB Molecule:5-methyltetrahydropteroyltriglutamate--homocysteine
PDBTitle: crystal structure of cobalamin-independent methionine synthase from t.2 maritima
79c3j3aZ_



not modelled 6.1 26
PDB header:ribosome
Chain: Z: PDB Molecule:40s ribosomal protein s25;
PDBTitle: structure of the human 40s ribosomal proteins
80c5xxuZ_



not modelled 6.0 16
PDB header:ribosome
Chain: Z: PDB Molecule:ribosomal protein es25;
PDBTitle: small subunit of toxoplasma gondii ribosome
81c1sseA_



not modelled 5.9 63
PDB header:transcription activator
Chain: A: PDB Molecule:ap-1 like transcription factor yap1;
PDBTitle: solution structure of the oxidized form of the yap1 redox2 domain
82c2kdhA_



not modelled 5.8 38
PDB header:structural protein
Chain: A: PDB Molecule:troponin c, slow skeletal and cardiac muscles;
PDBTitle: the solution structure of human cardiac troponin c in2 complex with the green tea polyphenol; (-)-3 epigallocatechin-3-gallate
83c4extB_



not modelled 5.6 45
PDB header:transferase/transcription
Chain: B: PDB Molecule:peptide from dna polymerase zeta catalytic subunit;
PDBTitle: structure of polymerase-interacting domain of human rev1 in complex2 with translesional synthesis polymerase zeta
84c4mxeA_



not modelled 5.5 44
PDB header:transferase
Chain: A: PDB Molecule:n-acetyltransferase esco1;
PDBTitle: human esco1 (eco1/ctf7 ortholog), acetyltransferase domain in complex2 with acetyl-coa
85c4xi5B_



not modelled 5.4 17
PDB header:viral protein/immune system
Chain: B: PDB Molecule:envelope glycoprotein l;
PDBTitle: ghgl of varicella-zoster virus in complex with human neutralizing2 antibodies
86c5usrG_



not modelled 5.4 21
PDB header:transferase
Chain: G: PDB Molecule:cysteine desulfurase, mitochondrial;
PDBTitle: crystal structure of human nfs1-isd11 in complex with e. coli acyl-2 carrier protein at 3.09 angstroms
87c6d42A_



not modelled 5.1 33
PDB header:membrane protein
Chain: A: PDB Molecule:intermediate conductance calcium-activated potassium
PDBTitle: crystal structure of the kca3.1 c-terminal four-helix bundle (with2 copper)

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