Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0104_(-)_122314_123828
DateTue Jul 23 14:50:14 BST 2019
Unique Job IDae6e22c5cc8f4791
SequenceVTPVTTFPLV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:45.911 Y:62.363 Z:63.482
Model (left) based on template c5hm8C_
Top template information
PDB header:hydrolase
Chain: C: PDB Molecule:adenosylhomocysteinase;
PDBTitle: 2.85 angstrom crystal structure of s-adenosylhomocysteinase from2 cryptosporidium parvum in complex with adenosine and nad.
Confidence and coverage
Confidence:100.0% Coverage: 63%
320 residues ( 63% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
488 residues ( 97%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5hm8C_
100.0 18
PDB header:hydrolase
Chain: C: PDB Molecule:adenosylhomocysteinase;
PDBTitle: 2.85 angstrom crystal structure of s-adenosylhomocysteinase from2 cryptosporidium parvum in complex with adenosine and nad.
2c3dhyC_
100.0 20
PDB header:hydrolase
Chain: C: PDB Molecule:adenosylhomocysteinase;
PDBTitle: crystal structures of mycobacterium tuberculosis s-adenosyl-l-2 homocysteine hydrolase in ternary complex with substrate and3 inhibitors
3c5v96A_
100.0 18
PDB header:hydrolase
Chain: A: PDB Molecule:s-adenosyl-l-homocysteine hydrolase;
PDBTitle: crystal structure of s-adenosyl-l-homocysteine hydrolase from2 naegleria fowleri with bound nad and adenosine
4c3oneA_
100.0 18
PDB header:hydrolase/hydrolase substrate
Chain: A: PDB Molecule:adenosylhomocysteinase;
PDBTitle: crystal structure of lupinus luteus s-adenosyl-l-homocysteine2 hydrolase in complex with adenine
5c1v8bA_
100.0 17
PDB header:hydrolase
Chain: A: PDB Molecule:adenosylhomocysteinase;
PDBTitle: crystal structure of a hydrolase
6c3n58D_
100.0 21
PDB header:hydrolase
Chain: D: PDB Molecule:adenosylhomocysteinase;
PDBTitle: crystal structure of s-adenosyl-l-homocysteine hydrolase from brucella2 melitensis in ternary complex with nad and adenosine, orthorhombic3 form
7c3d64A_
100.0 20
PDB header:hydrolase
Chain: A: PDB Molecule:adenosylhomocysteinase;
PDBTitle: crystal structure of s-adenosyl-l-homocysteine hydrolase from2 burkholderia pseudomallei
8c6aphA_
100.0 19
PDB header:hydrolase
Chain: A: PDB Molecule:adenosylhomocysteinase;
PDBTitle: crystal structure of adenosylhomocysteinase from elizabethkingia2 anophelis nuhp1 in complex with nad and adenosine
9c6f3oC_
100.0 20
PDB header:hydrolase
Chain: C: PDB Molecule:adenosylhomocysteinase;
PDBTitle: crystal structure of s-adenosyl-l-homocysteine hydrolase from2 pseudomonas aeruginosa complexed with adenine, k+ and zn2+ cations
10c3x2fA_
100.0 22
PDB header:hydrolase
Chain: A: PDB Molecule:adenosylhomocysteinase;
PDBTitle: a thermophilic s-adenosylhomocysteine hydrolase
11c3gvpB_
100.0 18
PDB header:hydrolase
Chain: B: PDB Molecule:adenosylhomocysteinase 3;
PDBTitle: human sahh-like domain of human adenosylhomocysteinase 3
12c1d4fD_
100.0 17
PDB header:hydrolase
Chain: D: PDB Molecule:s-adenosylhomocysteine hydrolase;
PDBTitle: crystal structure of recombinant rat-liver d244e mutant s-2 adenosylhomocysteine hydrolase
13d1li4a2
100.0 16
Fold:Flavodoxin-like
Superfamily:Formate/glycerate dehydrogenase catalytic domain-like
Family:S-adenosylhomocystein hydrolase
14d1v8ba2
100.0 17
Fold:Flavodoxin-like
Superfamily:Formate/glycerate dehydrogenase catalytic domain-like
Family:S-adenosylhomocystein hydrolase
15d1li4a1
99.9 15
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Formate/glycerate dehydrogenases, NAD-domain
16d1v8ba1
99.9 16
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Formate/glycerate dehydrogenases, NAD-domain
17c4orfA_
99.8 31
PDB header:transferase
Chain: A: PDB Molecule:acetyltransferase pat;
PDBTitle: camp-binding acyltransferase from mycobacterium smegmatis, mutant r95k
18c4avcA_
99.8 31
PDB header:transferase
Chain: A: PDB Molecule:lysine acetyltransferase;
PDBTitle: crystal structure of protein lysine acetyltransferase rv09982 in complex with acetyl coa and camp
19c5jonA_
99.8 24
PDB header:transport protein
Chain: A: PDB Molecule:maltose-binding periplasmic protein,potassium/sodium
PDBTitle: crystal structure of the unliganded form of hcn2 cnbd
20c4chwB_
99.8 28
PDB header:transport protein
Chain: B: PDB Molecule:cyclic nucleotide-gated potassium channel mll3241;
PDBTitle: the electron crystallography structure of the camp-free potassium2 channel mlok1
21c4myiA_
not modelled 99.8 23
PDB header:transferase
Chain: A: PDB Molecule:cgmp-dependent protein kinase, putative;
PDBTitle: crystal structure of pvx_084705
22c5u6pA_
not modelled 99.8 23
PDB header:transport protein
Chain: A: PDB Molecule:potassium/sodium hyperpolarization-activated cyclic
PDBTitle: structure of the human hcn1 hyperpolarization-activated cyclic2 nucleotide-gated ion channel in complex with camp
23c5h3oA_
not modelled 99.7 22
PDB header:transport protein
Chain: A: PDB Molecule:cyclic nucleotide-gated cation channel;
PDBTitle: structure of a eukaryotic cyclic nucleotide-gated channel
24d1ne6a1
not modelled 99.7 28
Fold:Double-stranded beta-helix
Superfamily:cAMP-binding domain-like
Family:cAMP-binding domain
25c2byvE_
not modelled 99.7 26
PDB header:regulation
Chain: E: PDB Molecule:rap guanine nucleotide exchange factor 4;
PDBTitle: structure of the camp responsive exchange factor epac2 in2 its auto-inhibited state
26c3j4qC_
not modelled 99.7 22
PDB header:transferase
Chain: C: PDB Molecule:camp-dependent protein kinase type ii-alpha regulatory
PDBTitle: pseudo-atomic model of the akap18-pka complex in a bent conformation2 derived from electron microscopy
27c5k7lA_
not modelled 99.7 21
PDB header:metal transport/calcium binding protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily h member 1;
PDBTitle: single particle cryo-em structure of the voltage-gated k+ channel eag12 bound to the channel inhibitor calmodulin
28c5va1A_
not modelled 99.7 21
PDB header:transport protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily h member 2;
PDBTitle: cryo-em structure of the human ether-a-go-go related k+ channel
29c3gydA_
not modelled 99.7 18
PDB header:dna binding protein
Chain: A: PDB Molecule:cyclic nucleotide-binding domain;
PDBTitle: crystal structure of a cyclic nucleotide-binding domain (mfla_1926)2 from methylobacillus flagellatus kt at 1.79 a resolution
30c6g52H_
not modelled 99.7 16
PDB header:metal transport
Chain: H: PDB Molecule:metal transporter cnnm4;
PDBTitle: crystal structure of the cnmp binding domain of the magnesium2 transporter cnnm4
31c3otfA_
not modelled 99.7 26
PDB header:transport protein
Chain: A: PDB Molecule:potassium/sodium hyperpolarization-activated cyclic
PDBTitle: structural basis for the camp-dependent gating in human hcn4 channel
32c3pvbB_
not modelled 99.7 27
PDB header:transferase
Chain: B: PDB Molecule:camp-dependent protein kinase type i-alpha regulatory
PDBTitle: crystal structure of (73-244)ria:c holoenzyme of camp-dependent2 protein kinase
33c4dinB_
not modelled 99.7 31
PDB header:transferase/transport protein
Chain: B: PDB Molecule:camp-dependent protein kinase type i-beta regulatory
PDBTitle: novel localization and quaternary structure of the pka ri beta2 holoenzyme
34c5t3nB_
not modelled 99.7 26
PDB header:transferase
Chain: B: PDB Molecule:camp-dependent protein kinase regulatory subunit;
PDBTitle: sp-2cl-camps bound to pkar cbd2
35c5v4sB_
not modelled 99.7 27
PDB header:transport protein
Chain: B: PDB Molecule:transporter, cation channel family / cyclic nucleotide-
PDBTitle: cryoem structure of a prokaryotic cyclic nucleotide-gated ion channel
36d1zyba2
not modelled 99.7 15
Fold:Double-stranded beta-helix
Superfamily:cAMP-binding domain-like
Family:cAMP-binding domain
37c3dn7A_
not modelled 99.7 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:cyclic nucleotide binding regulatory protein;
PDBTitle: cyclic nucleotide binding regulatory protein from cytophaga2 hutchinsonii.
38c5bv6A_
not modelled 99.6 20
PDB header:transferase
Chain: A: PDB Molecule:cgmp-dependent protein kinase 2;
PDBTitle: pkg ii's carboxyl terminal cyclic nucleotide binding domain (cnb-b) in2 a complex with cgmp
39d1cx4a2
not modelled 99.6 24
Fold:Double-stranded beta-helix
Superfamily:cAMP-binding domain-like
Family:cAMP-binding domain
40d2gaua2
not modelled 99.6 17
Fold:Double-stranded beta-helix
Superfamily:cAMP-binding domain-like
Family:cAMP-binding domain
41c3cf6E_
not modelled 99.6 23
PDB header:signaling protein/gtp-binding protein
Chain: E: PDB Molecule:rap guanine nucleotide exchange factor (gef) 4;
PDBTitle: structure of epac2 in complex with cyclic-amp and rap
42c2ptmA_
not modelled 99.6 23
PDB header:transport protein
Chain: A: PDB Molecule:hyperpolarization-activated (ih) channel;
PDBTitle: structure and rearrangements in the carboxy-terminal region of spih2 channels
43c2pqqD_
not modelled 99.6 18
PDB header:transcription
Chain: D: PDB Molecule:putative transcriptional regulator;
PDBTitle: structural genomics, the crystal structure of the n-terminal domain of2 a transcriptional regulator from streptomyces coelicolor a3(2)
44d1cx4a1
not modelled 99.6 24
Fold:Double-stranded beta-helix
Superfamily:cAMP-binding domain-like
Family:cAMP-binding domain
45c1o7fA_
not modelled 99.6 28
PDB header:regulation
Chain: A: PDB Molecule:camp-dependent rap1 guanine-nucleotide exchange
PDBTitle: crystal structure of the regulatory domain of epac2
46c3ogjD_
not modelled 99.6 21
PDB header:transferase
Chain: D: PDB Molecule:prkg1 protein;
PDBTitle: crystal structure of partial apo (92-227) of cgmp-dependent protein2 kinase
47c5c8wB_
not modelled 99.6 25
PDB header:transferase
Chain: B: PDB Molecule:cgmp-dependent protein kinase 2;
PDBTitle: pkg ii's amino terminal cyclic nucleotide binding domain (cnb-a) in a2 complex with cgmp
48c3mdpA_
not modelled 99.6 15
PDB header:nucleotide binding protein
Chain: A: PDB Molecule:cyclic nucleotide-binding domain (cnmp-bd) protein;
PDBTitle: crystal structure of a putative cyclic nucleotide-binding protein2 (gmet_1532) from geobacter metallireducens gs-15 at 1.90 a resolution
49c6cjtB_
not modelled 99.6 23
PDB header:transport protein
Chain: B: PDB Molecule:sthk cyclic nucleotide-gated potassium channel;
PDBTitle: structure of the sthk cyclic nucleotide-gated potassium channel in2 complex with cgmp
50d1q3ea_
not modelled 99.6 24
Fold:Double-stranded beta-helix
Superfamily:cAMP-binding domain-like
Family:cAMP-binding domain
51d3e5ua2
not modelled 99.6 14
Fold:Double-stranded beta-helix
Superfamily:cAMP-binding domain-like
Family:cAMP-binding domain
52c5kbfA_
not modelled 99.6 24
PDB header:transferase
Chain: A: PDB Molecule:camp-dependent protein kinase regulatory subunit, putative;
PDBTitle: camp bound pfpka-r (141-441)
53c3idcB_
not modelled 99.6 24
PDB header:transferase
Chain: B: PDB Molecule:camp-dependent protein kinase type ii-beta regulatory
PDBTitle: crystal structure of (102-265)riib:c holoenzyme of camp-dependent2 protein kinase
54c3shrA_
not modelled 99.6 29
PDB header:transferase
Chain: A: PDB Molecule:cgmp-dependent protein kinase 1;
PDBTitle: crystal structure of cgmp-dependent protein kinase reveals novel site2 of interchain communication
55c2z69A_
not modelled 99.6 22
PDB header:transcription regulator
Chain: A: PDB Molecule:dnr protein;
PDBTitle: crystal structure of the sensor domain of the transcriptional2 regulator dnr from pseudomonas aeruginosa
56d1o5la1
not modelled 99.6 15
Fold:Double-stranded beta-helix
Superfamily:cAMP-binding domain-like
Family:cAMP-binding domain
57c1o5lA_
not modelled 99.6 15
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, crp family;
PDBTitle: crystal structure of transcriptional regulator (tm1171) from2 thermotoga maritima at 2.30 a resolution
58d1ne6a2
not modelled 99.6 29
Fold:Double-stranded beta-helix
Superfamily:cAMP-binding domain-like
Family:cAMP-binding domain
59c3of1A_
not modelled 99.6 26
PDB header:transferase
Chain: A: PDB Molecule:camp-dependent protein kinase regulatory subunit;
PDBTitle: crystal structure of bcy1, the yeast regulatory subunit of pka
60d2h6ca2
not modelled 99.6 12
Fold:Double-stranded beta-helix
Superfamily:cAMP-binding domain-like
Family:cAMP-binding domain
61c4d7sB_
not modelled 99.6 23
PDB header:transport protein
Chain: B: PDB Molecule:sthk_cnbd_cgmp;
PDBTitle: structure of the sthk carboxy-terminal region in complex with cgmp
62c4f8aA_
not modelled 99.6 21
PDB header:membrane protein, transport protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily h member 1;
PDBTitle: cyclic nucleotide binding-homology domain from mouse eag1 potassium2 channel
63c5v30B_
not modelled 99.6 18
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of the sensor domain of the transcriptional2 regulator hcpr from porphyromonas gingivalis
64d1ft9a2
not modelled 99.6 20
Fold:Double-stranded beta-helix
Superfamily:cAMP-binding domain-like
Family:CO-sensing protein CooA, N-terminal domain
65c4lloE_
not modelled 99.6 21
PDB header:transport protein
Chain: E: PDB Molecule:potassium voltage-gated channel subfamily h member 1;
PDBTitle: structure of the eag domain-cnbhd complex of the mouse eag1 channel
66d1wgpa_
not modelled 99.6 21
Fold:Double-stranded beta-helix
Superfamily:cAMP-binding domain-like
Family:cAMP-binding domain
67d2coha2
not modelled 99.5 20
Fold:Double-stranded beta-helix
Superfamily:cAMP-binding domain-like
Family:cAMP-binding domain
68c6ftfB_
not modelled 99.5 20
PDB header:signaling protein
Chain: B: PDB Molecule:protein kinase a regulatory subunit, putative;
PDBTitle: regulatory subunit of a camp-independent protein kinase a from2 trypanosoma cruzi at 1.09 a resolution
69d1vp6a_
not modelled 99.5 28
Fold:Double-stranded beta-helix
Superfamily:cAMP-binding domain-like
Family:cAMP-binding domain
70d1o7fa3
not modelled 99.5 24
Fold:Double-stranded beta-helix
Superfamily:cAMP-binding domain-like
Family:cAMP-binding domain
71d2oz6a2
not modelled 99.5 24
Fold:Double-stranded beta-helix
Superfamily:cAMP-binding domain-like
Family:cAMP-binding domain
72c4kg1A_
not modelled 99.5 24
PDB header:lyase
Chain: A: PDB Molecule:diguanylate cyclase;
PDBTitle: cgmp-responsive diguanylate cyclase
73c2bgcA_
not modelled 99.5 7
PDB header:transcription
Chain: A: PDB Molecule:prfa;
PDBTitle: prfa-g145s, a constitutive active mutant of the2 transcriptional regulator in l.monocytogenes
74c3uknC_
not modelled 99.5 25
PDB header:transport protein, membrane protein
Chain: C: PDB Molecule:novel protein similar to vertebrate potassium voltage-gated
PDBTitle: structure of the c-linker/cnbhd of zelk channels in c 2 2 21 space2 group
75d1i5za2
not modelled 99.5 25
Fold:Double-stranded beta-helix
Superfamily:cAMP-binding domain-like
Family:cAMP-binding domain
76c3iwzB_
not modelled 99.5 19
PDB header:transcription
Chain: B: PDB Molecule:catabolite activation-like protein;
PDBTitle: the c-di-gmp responsive global regulator clp links cell-cell signaling2 to virulence gene expression in xanthomonas campestris
77c1wwkA_
not modelled 99.5 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:phosphoglycerate dehydrogenase;
PDBTitle: crystal structure of phosphoglycerate dehydrogenase from pyrococcus2 horikoshii ot3
78c5d1iB_
not modelled 99.5 24
PDB header:unknown function
Chain: B: PDB Molecule:cyclic nucleotide-binding protein;
PDBTitle: structure of cyclic nucleotide-binding-like protein from brucella2 abortus bv. 1 str. 9-941
79c1cx4A_
not modelled 99.5 25
PDB header:signaling protein
Chain: A: PDB Molecule:camp-dependent protein kinase regulatory subunit
PDBTitle: crystal structure of a deletion mutant of the type ii beta2 regulatory subunit of camp-dependent protein kinase
80c3fx3A_
not modelled 99.5 17
PDB header:camp-binding protein
Chain: A: PDB Molecule:cyclic nucleotide-binding protein;
PDBTitle: structure of a putative camp-binding regulatory protein from2 silicibacter pomeroyi dss-3
81c4rfaA_
not modelled 99.5 11
PDB header:transcription regulator
Chain: A: PDB Molecule:lmo0740 protein;
PDBTitle: crystal structure of cyclic nucleotide-binding domain containing2 protein from listeria monocytogenes egd-e
82c3tnqA_
not modelled 99.5 29
PDB header:transferase
Chain: A: PDB Molecule:camp-dependent protein kinase type ii-beta regulatory
PDBTitle: structure and allostery of the pka riib tetrameric holoenzyme
83d1o7fa2
not modelled 99.5 26
Fold:Double-stranded beta-helix
Superfamily:cAMP-binding domain-like
Family:cAMP-binding domain
84c2n7gA_
not modelled 99.5 21
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily h member 2;
PDBTitle: structure of the cyclic nucleotide-binding homology domain of the herg2 channel
85c1zybA_
not modelled 99.5 14
PDB header:transcription regulator
Chain: A: PDB Molecule:transcription regulator, crp family;
PDBTitle: crystal structure of transcription regulator from bacteroides2 thetaiotaomicron vpi-5482 at 2.15 a resolution
86c2g76A_
not modelled 99.5 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase;
PDBTitle: crystal structure of human 3-phosphoglycerate dehydrogenase
87c1gdhA_
not modelled 99.5 18
PDB header:oxidoreductase(choh (d)-nad(p)+ (a))
Chain: A: PDB Molecule:d-glycerate dehydrogenase;
PDBTitle: crystal structure of a nad-dependent d-glycerate2 dehydrogenase at 2.4 angstroms resolution
88c1rgsA_
not modelled 99.5 30
PDB header:kinase
Chain: A: PDB Molecule:camp dependent protein kinase;
PDBTitle: regulatory subunit of camp dependent protein kinase
89c3d4oA_
not modelled 99.5 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:dipicolinate synthase subunit a;
PDBTitle: crystal structure of dipicolinate synthase subunit a (np_243269.1)2 from bacillus halodurans at 2.10 a resolution
90c2eklA_
not modelled 99.5 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase;
PDBTitle: structure of st1218 protein from sulfolobus tokodaii
91c4ev0A_
not modelled 99.5 22
PDB header:transcription activator
Chain: A: PDB Molecule:transcription regulator, crp family;
PDBTitle: crystal structure of thermus thermophilus catabolite activator protein
92c2d93A_
not modelled 99.4 16
PDB header:signaling protein
Chain: A: PDB Molecule:rap guanine nucleotide exchange factor 6;
PDBTitle: solution structure of the cnmp_binding domain of human rap2 guanine nucleotide exchange factor 6
93c5j3uA_
not modelled 99.4 27
PDB header:transferase
Chain: A: PDB Molecule:protein kinase a;
PDBTitle: co-crystal structure of the regulatory domain of toxoplasma gondii pka2 with camp
94c4l11A_
not modelled 99.4 21
PDB header:metal transport
Chain: A: PDB Molecule:agap007709-pa;
PDBTitle: structure of the c-linker/cnbhd of agerg channels
95c3e97A_
not modelled 99.4 16
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, crp/fnr family;
PDBTitle: crystal structure of transcriptional regulator of crp/fnr family2 (yp_604437.1) from deinococcus geothermalis dsm 11300 at 1.86 a3 resolution
96c3dv8A_
not modelled 99.4 18
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, crp/fnr family;
PDBTitle: crystal structure of a putative transcriptional regulator of the2 crp/fnr family (eubrec_1222) from eubacterium rectale atcc 33656 at3 2.55 a resolution
97c4e5kC_
not modelled 99.4 16
PDB header:oxidoreductase
Chain: C: PDB Molecule:phosphite dehydrogenase (thermostable variant);
PDBTitle: thermostable phosphite dehydrogenase in complex with nad and sulfite
98c2dbqA_
not modelled 99.4 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:glyoxylate reductase;
PDBTitle: crystal structure of glyoxylate reductase (ph0597) from pyrococcus2 horikoshii ot3, complexed with nadp (i41)
99c6ih2B_
not modelled 99.4 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:phosphite dehydrogenase;
PDBTitle: crystal structure of phosphite dehydrogenase from ralstonia sp. 4506
100c2rirA_
not modelled 99.4 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:dipicolinate synthase, a chain;
PDBTitle: crystal structure of dipicolinate synthase, a chain, from bacillus2 subtilis
101c2zdbA_
not modelled 99.3 19
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, crp family;
PDBTitle: crystal structure of tthb099, a transcriptional regulator crp family2 from thermus thermophilus hb8
102c4njmA_
not modelled 99.3 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase, putative;
PDBTitle: crystal structure of phosphoglycerate bound 3-phosphoglycerate2 dehydrogenase in entamoeba histolytica
103c2cukC_
not modelled 99.3 19
PDB header:oxidoreductase
Chain: C: PDB Molecule:glycerate dehydrogenase/glyoxylate reductase;
PDBTitle: crystal structure of tt0316 protein from thermus thermophilus hb8
104c3kccA_
not modelled 99.3 25
PDB header:transcription
Chain: A: PDB Molecule:catabolite gene activator;
PDBTitle: crystal structure of d138l mutant of catabolite gene activator protein
105c3la2A_
not modelled 99.3 18
PDB header:transcription
Chain: A: PDB Molecule:global nitrogen regulator;
PDBTitle: crystal structure of ntca in complex with 2-oxoglutarate
106c3d0sA_
not modelled 99.3 18
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein;
PDBTitle: camp receptor protein from m.tuberculosis, camp-free form
107c1zreB_
not modelled 99.3 25
PDB header:gene regulation/dna
Chain: B: PDB Molecule:catabolite gene activator;
PDBTitle: 4 crystal structures of cap-dna with all base-pair substitutions at2 position 6, cap-[6g;17c]icap38 dna
108c3evtA_
not modelled 99.3 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:phosphoglycerate dehydrogenase;
PDBTitle: crystal structure of phosphoglycerate dehydrogenase from lactobacillus2 plantarum
109d1a4ia1
not modelled 99.3 17
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Aminoacid dehydrogenase-like, C-terminal domain
110c5w5aB_
not modelled 99.3 22
PDB header:transcription
Chain: B: PDB Molecule:hth-type transcriptional regulator cmr;
PDBTitle: crystal structure of mycobacterium tuberculosis crp-fnr family2 transcription factor cmr (rv1675c)
111c3bazA_
not modelled 99.3 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:hydroxyphenylpyruvate reductase;
PDBTitle: structure of hydroxyphenylpyruvate reductase from coleus blumei in2 complex with nadp+
112c2w2kB_
not modelled 99.3 11
PDB header:oxidoreductase
Chain: B: PDB Molecule:d-mandelate dehydrogenase;
PDBTitle: crystal structure of the apo forms of rhodotorula graminis2 d-mandelate dehydrogenase at 1.8a.
113c1j4aA_
not modelled 99.3 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:d-lactate dehydrogenase;
PDBTitle: insights into domain closure, substrate specificity and2 catalysis of d-lactate dehydrogenase from lactobacillus3 bulgaricus
114c3k5pA_
not modelled 99.3 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase;
PDBTitle: crystal structure of amino acid-binding act: d-isomer specific 2-2 hydroxyacid dehydrogenase catalytic domain from brucella melitensis
115d2naca1
not modelled 99.3 15
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Formate/glycerate dehydrogenases, NAD-domain
116d1ygya1
not modelled 99.2 21
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Formate/glycerate dehydrogenases, NAD-domain
117c3e6dA_
not modelled 99.2 13
PDB header:transcription regulation
Chain: A: PDB Molecule:cyclic nucleotide-binding protein;
PDBTitle: crystal structure of cprk c200s
118c5tx7A_
not modelled 99.2 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:d-isomer specific 2-hydroxyacid dehydrogenase family
PDBTitle: crystal structure of d-isomer specific 2-hydroxyacid dehydrogenase2 from desulfovibrio vulgaris
119c1ybaC_
not modelled 99.2 22
PDB header:oxidoreductase
Chain: C: PDB Molecule:d-3-phosphoglycerate dehydrogenase;
PDBTitle: the active form of phosphoglycerate dehydrogenase
120d1dxya1
not modelled 99.2 15
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Formate/glycerate dehydrogenases, NAD-domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite