Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0105c_(rpmB)_123977_124261
DateTue Jul 23 14:50:14 BST 2019
Unique Job ID16db6609968d9fc6
SequenceMSARCQITGR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:26.240 Y:30.180 Z:60.226
Model (left) based on template c1vw4S_
Top template information
PDB header:ribosome
Chain: S: PDB Molecule:54s ribosomal protein l24, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
Confidence and coverage
Confidence:100.0% Coverage: 95%
89 residues ( 95% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1vw4S_



100.0 26
PDB header:ribosome
Chain: S: PDB Molecule:54s ribosomal protein l24, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
2c4v191_



100.0 19
PDB header:ribosome
Chain: 1: PDB Molecule:mitoribosomal protein bl28m, mrpl28;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
3d2qamz1



100.0 34
Fold:L28p-like
Superfamily:L28p-like
Family:Ribosomal protein L28
4c6dzpy_



99.9 66
PDB header:ribosome
Chain: Y: PDB Molecule:
PDBTitle: cryo-em structure of mycobacterium smegmatis c(minus) 50s ribosomal2 subunit
5c3bboY_



99.9 28
PDB header:ribosome
Chain: Y: PDB Molecule:ribosomal protein l28;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
6d2jz6a1



99.9 29
Fold:L28p-like
Superfamily:L28p-like
Family:Ribosomal protein L28
7c5o60Y_



99.9 43
PDB header:ribosome
Chain: Y: PDB Molecule:50s ribosomal protein l28;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
8c6ddgJ_



99.8 34
PDB header:ribosome/antibiotic
Chain: J: PDB Molecule:50s ribosomal protein l28;
PDBTitle: structure of the 50s ribosomal subunit from methicillin resistant2 staphylococcus aureus in complex with the oxazolidinone antibiotic3 lzd-6
9c2jl81_



99.7 23
PDB header:ribosome
Chain: 1: PDB Molecule:50s ribosomal protein l28;
PDBTitle: insights into translational termination from the structure2 of rf2 bound to the ribosome (part 4 of 4).3 this file contains the 50s subunit.
10c4wfaU_



99.0 36
PDB header:ribosome
Chain: U: PDB Molecule:50s ribosomal protein l28;
PDBTitle: the crystal structure of the large ribosomal subunit of staphylococcus2 aureus in complex with linezolid
11d2zjru1



98.7 18
Fold:L28p-like
Superfamily:L28p-like
Family:Ribosomal protein L28
12c4ce41_



98.5 24
PDB header:ribosome
Chain: 1: PDB Molecule:mrpl28;
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
13d2j0111



94.7 24
Fold:L28p-like
Superfamily:L28p-like
Family:Ribosomal protein L28
14d2cu8a1



44.7 37
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
15c4v19P_



35.1 21
PDB header:ribosome
Chain: P: PDB Molecule:mitoribosomal protein ul15m, mrpl15;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
16c2uz0B_



24.0 29
PDB header:hydrolase
Chain: B: PDB Molecule:tributyrin esterase;
PDBTitle: the crystal crystal structure of the esta protein, a2 virulence factor esta protein from streptococcus pneumonia
17c5o60M_



20.8 20
PDB header:ribosome
Chain: M: PDB Molecule:50s ribosomal protein l15;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
18d2zjri1



20.4 33
Fold:Ribosomal proteins L15p and L18e
Superfamily:Ribosomal proteins L15p and L18e
Family:Ribosomal proteins L15p and L18e
19c1vw4J_



19.8 40
PDB header:ribosome
Chain: J: PDB Molecule:54s ribosomal protein l10, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
20c3j3vL_



15.8 20
PDB header:ribosome
Chain: L: PDB Molecule:50s ribosomal protein l15;
PDBTitle: atomic model of the immature 50s subunit from bacillus subtilis (state2 i-a)
21c2zkro_



not modelled 15.6 31
PDB header:ribosomal protein/rna
Chain: O: PDB Molecule:rna expansion segment es30;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
22c4ce4P_



not modelled 15.0 29
PDB header:ribosome
Chain: P: PDB Molecule:mrpl15;
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
23d1vqol1



not modelled 14.5 13
Fold:Ribosomal proteins L15p and L18e
Superfamily:Ribosomal proteins L15p and L18e
Family:Ribosomal proteins L15p and L18e
24c3j21P_



not modelled 13.1 19
PDB header:ribosome
Chain: P: PDB Molecule:50s ribosomal protein l18e;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
25c4n0oC_



not modelled 12.8 36
PDB header:hydrolase/dna
Chain: C: PDB Molecule:replicase polyprotein 1ab;
PDBTitle: complex structure of arterivirus nonstructural protein 10 (helicase)2 with dna
26c2jo5C_



not modelled 12.6 23
PDB header:de novo protein
Chain: C: PDB Molecule:kia7f;
PDBTitle: tetrameric structure of kia7f peptide
27c2jo5B_



not modelled 12.6 23
PDB header:de novo protein
Chain: B: PDB Molecule:kia7f;
PDBTitle: tetrameric structure of kia7f peptide
28c2jo5A_



not modelled 12.6 23
PDB header:de novo protein
Chain: A: PDB Molecule:kia7f;
PDBTitle: tetrameric structure of kia7f peptide
29c2jo5D_



not modelled 12.6 23
PDB header:de novo protein
Chain: D: PDB Molecule:kia7f;
PDBTitle: tetrameric structure of kia7f peptide
30c2elrA_



not modelled 12.5 29
PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 406;
PDBTitle: solution structure of the 15th c2h2 zinc finger of human2 zinc finger protein 406
31c2zkrl_



not modelled 12.3 20
PDB header:ribosomal protein/rna
Chain: L: PDB Molecule:rna expansion segment es20;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
32c4a1cK_



not modelled 12.2 20
PDB header:ribosome
Chain: K: PDB Molecule:60s ribosomal protein l27a;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4.
33d2j01p1



not modelled 11.8 14
Fold:Ribosomal proteins L15p and L18e
Superfamily:Ribosomal proteins L15p and L18e
Family:Ribosomal proteins L15p and L18e
34c3j39a_



not modelled 11.7 20
PDB header:ribosome
Chain: A: PDB Molecule:60s ribosomal protein l8;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
35d2yt9a2



not modelled 11.5 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
36c4zxsC_



not modelled 11.2 8
PDB header:viral protein
Chain: C: PDB Molecule:virion egress protein ul34;
PDBTitle: hsv-1 nuclear egress complex
37c3j21L_



not modelled 11.0 20
PDB header:ribosome
Chain: L: PDB Molecule:50s ribosomal protein l15p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
38c1xtdA_



not modelled 10.5 16
PDB header:translation
Chain: A: PDB Molecule:eukaryotic initiation factor 5a;
PDBTitle: structural analysis of leishmania mexicana eukaryotic initiation2 factor 5a
39c3zf7b_



not modelled 10.4 33
PDB header:ribosome
Chain: B: PDB Molecule:
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
40d2dmda2



not modelled 10.0 29
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
41c3iz5R_



not modelled 9.6 19
PDB header:ribosome
Chain: R: PDB Molecule:60s ribosomal protein l18 (l18e);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
42c3izbP_



not modelled 9.0 39
PDB header:ribosome
Chain: P: PDB Molecule:40s ribosomal protein rps11 (s17p);
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
43c3u5gL_



not modelled 8.8 29
PDB header:ribosome
Chain: L: PDB Molecule:40s ribosomal protein s11-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 40s subunit, ribosome b
44c2c4iA_



not modelled 8.7 33
PDB header:glycoprotein
Chain: A: PDB Molecule:avidin;
PDBTitle: crystal structure of engineered avidin
45c3iz6P_



not modelled 8.6 35
PDB header:ribosome
Chain: P: PDB Molecule:40s ribosomal protein s11 (s17p);
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
46c4a1aN_



not modelled 8.4 19
PDB header:ribosome
Chain: N: PDB Molecule:rpl18;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3.
47c4qiwP_



not modelled 8.2 27
PDB header:transcription
Chain: P: PDB Molecule:dna-directed rna polymerase subunit p;
PDBTitle: crystal structure of euryarchaeal rna polymerase from thermococcus2 kodakarensis
48c3er0A_



not modelled 8.0 16
PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 5a-2;
PDBTitle: crystal structure of the full length eif5a from2 saccharomyces cerevisiae
49c3hksB_



not modelled 7.9 14
PDB header:translation, rna binding protein
Chain: B: PDB Molecule:eukaryotic translation initiation factor 5a-2;
PDBTitle: crystal structure of eukaryotic translation initiation2 factor eif-5a2 from arabidopsis thaliana
50c3zf7I_



not modelled 7.6 25
PDB header:ribosome
Chain: I: PDB Molecule:60s ribosomal protein l18;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
51c2jtgA_



not modelled 7.6 25
PDB header:metal binding protein
Chain: A: PDB Molecule:thap domain-containing protein 1;
PDBTitle: solution structure of the thap-zinc finger of thap1
52c4z3uC_



not modelled 7.6 14
PDB header:viral protein
Chain: C: PDB Molecule:ul34 protein;
PDBTitle: prv nuclear egress complex
53d2b8ta2



not modelled 7.6 14
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Type II thymidine kinase zinc finger
54c3j3bQ_



not modelled 7.3 17
PDB header:ribosome
Chain: Q: PDB Molecule:60s ribosomal protein l18;
PDBTitle: structure of the human 60s ribosomal proteins
55c3iufA_



not modelled 6.9 23
PDB header:protein binding
Chain: A: PDB Molecule:zinc finger protein ubi-d4;
PDBTitle: crystal structure of the c2h2-type zinc finger domain of human ubi-d4
56c2qm0B_



not modelled 6.8 13
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:bes;
PDBTitle: crystal structure of bes protein from bacillus cereus
57c3zeyE_



not modelled 6.8 20
PDB header:ribosome
Chain: E: PDB Molecule:40s ribosomal proteins s11, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
58c1wbiD_



not modelled 6.8 33
PDB header:avidin-related protein
Chain: D: PDB Molecule:avidin-related protein 2;
PDBTitle: avr2
59d2csha2



not modelled 6.6 20
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
60d1dxga_



not modelled 6.6 33
Fold:Rubredoxin-like
Superfamily:Rubredoxin-like
Family:Desulforedoxin
61c3j20R_



not modelled 6.5 27
PDB header:ribosome
Chain: R: PDB Molecule:30s ribosomal protein s17p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
62c3izcR_



not modelled 6.5 25
PDB header:ribosome
Chain: R: PDB Molecule:60s ribosomal protein rpl18 (l18e);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
63c3j39Q_



not modelled 6.5 19
PDB header:ribosome
Chain: Q: PDB Molecule:60s ribosomal protein l18;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
64c3hi2C_



not modelled 6.3 13
PDB header:dna binding protein/toxin
Chain: C: PDB Molecule:hth-type transcriptional regulator mqsa(ygit);
PDBTitle: structure of the n-terminal domain of the e. coli antitoxin mqsa2 (ygit/b3021) in complex with the e. coli toxin mqsr (ygiu/b3022)
65d1ibia2



not modelled 6.3 23
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
66c5xyiL_



not modelled 6.1 35
PDB header:ribosome
Chain: L: PDB Molecule:uncharacterized protein;
PDBTitle: small subunit of trichomonas vaginalis ribosome
67c4b6aQ_



not modelled 5.9 25
PDB header:ribosome
Chain: Q: PDB Molecule:60s ribosomal protein l18-b;
PDBTitle: cryo-em structure of the 60s ribosomal subunit in complex2 with arx1 and rei1
68d1vzya2



not modelled 5.8 17
Fold:HSP33 redox switch-like
Superfamily:HSP33 redox switch-like
Family:HSP33 redox switch-like
69d1vq0a2



not modelled 5.7 17
Fold:HSP33 redox switch-like
Superfamily:HSP33 redox switch-like
Family:HSP33 redox switch-like
70c3jyvN_



not modelled 5.7 20
PDB header:ribosome
Chain: N: PDB Molecule:40s ribosomal protein s29(a);
PDBTitle: structure of the 40s rrna and proteins and p/e trna for eukaryotic2 ribosome based on cryo-em map of thermomyces lanuginosus ribosome at3 8.9a resolution
71c2l8eA_



not modelled 5.6 29
PDB header:dna binding protein
Chain: A: PDB Molecule:polyhomeotic-like protein 1;
PDBTitle: solution nmr structure of fcs domain of human polyhomeotic homolog 12 (hph1)
72c5z58w_



not modelled 5.5 26
PDB header:splicing
Chain: W: PDB Molecule:
PDBTitle: cryo-em structure of a human activated spliceosome (early bact) at 4.92 angstrom.
73c5zwnY_



not modelled 5.5 29
PDB header:splicing
Chain: Y: PDB Molecule:protein luc7;
PDBTitle: cryo-em structure of the yeast pre-b complex at an average resolution2 of 3.3 angstrom (part ii: u1 snrnp region)
74c3j20P_



not modelled 5.4 33
PDB header:ribosome
Chain: P: PDB Molecule:30s ribosomal protein s14p type z;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
75c3j3aL_



not modelled 5.4 30
PDB header:ribosome
Chain: L: PDB Molecule:40s ribosomal protein s11;
PDBTitle: structure of the human 40s ribosomal proteins
76c4rgyA_



not modelled 5.4 5
PDB header:hydrolase
Chain: A: PDB Molecule:esterase;
PDBTitle: structural and functional analysis of a low-temperature-active2 alkaline esterase from south china sea marine sediment microbial3 metagenomic library
77c5xxud_



not modelled 5.3 20
PDB header:ribosome
Chain: D: PDB Molecule:ribosomal protein us3;
PDBTitle: small subunit of toxoplasma gondii ribosome
78c2xznN_



not modelled 5.3 30
PDB header:ribosome
Chain: N: PDB Molecule:rps29e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
79c6az1S_



not modelled 5.2 22
PDB header:ribosome/antibiotic
Chain: S: PDB Molecule:ribosomal protein s14;
PDBTitle: cryo-em structure of the small subunit of leishmania ribosome bound to2 paromomycin
80d1xjha_



not modelled 5.1 25
Fold:HSP33 redox switch-like
Superfamily:HSP33 redox switch-like
Family:HSP33 redox switch-like
81c3zey8_



not modelled 5.1 33
PDB header:ribosome
Chain: 8: PDB Molecule:ribosomal protein s29, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome

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