Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0108c_(-)_130892_131101
DateTue Jul 23 14:50:15 BST 2019
Unique Job ID9d4c79469598dd30
SequenceLVPVETLHSG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:19.765 Y:13.805 Z:21.946
Model (left) based on template d2cuqa1
Top template information
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
Confidence and coverage
Confidence: 37.2% Coverage: 16%
11 residues ( 16% of your sequence) have been modelled with 37.2% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2cuqa1



37.2 18
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
2c3b8fB_



24.2 29
PDB header:hydrolase
Chain: B: PDB Molecule:putative blasticidin s deaminase;
PDBTitle: crystal structure of the cytidine deaminase from bacillus anthracis
3c2fkdK_



16.7 17
PDB header:transcription regulator
Chain: K: PDB Molecule:repressor protein ci;
PDBTitle: crystal structure of the c-terminal domain of bacteriophage2 186 repressor
4c3fl2A_



13.3 38
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase uhrf1;
PDBTitle: crystal structure of the ring domain of the e3 ubiquitin-protein2 ligase uhrf1
5c4r86B_



12.2 19
PDB header:protein transport
Chain: B: PDB Molecule:rnd family aminoglycoside/multidrug efflux pump;
PDBTitle: crystal structure of aminoglycoside/multidrug efflux system acrd from2 salmonella typhimurium
6c6ax6B_



12.2 42
PDB header:oxidoreductase
Chain: B: PDB Molecule:procollagen lysyl hydroxylase and glycosyltransferase;
PDBTitle: the crystal structure of a lysyl hydroxylase from acanthamoeba2 polyphaga mimivirus
7d1vhka1



9.8 22
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:YggJ N-terminal domain-like
8c2iuwA_



9.4 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:alkylated repair protein alkb homolog 3;
PDBTitle: crystal structure of human abh3 in complex with iron ion and 2-2 oxoglutarate
9d1vcpa_



8.7 59
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Viral proteases
10d1wyka_



8.4 59
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Viral proteases
11d1ep5a_



8.0 59
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Viral proteases
12c1kxfA_



8.0 59
PDB header:viral protein
Chain: A: PDB Molecule:sindbis virus capsid protein;
PDBTitle: sindbis virus capsid, (wild-type) residues 1-264, tetragonal crystal2 form (form ii)
13c2oghA_



7.5 33
PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor eif-1;
PDBTitle: solution structure of yeast eif1
14c5c5tB_



7.2 44
PDB header:oxidoreductase
Chain: B: PDB Molecule:prolyl 4-hydroxylase;
PDBTitle: the crystal structure of viral collagen prolyl hydroxylase vcph from2 paramecium bursaria chlorella virus-1 - 2og complex
15c4unmB_



7.2 42
PDB header:metal binding protein
Chain: B: PDB Molecule:secreted protein;
PDBTitle: structure of galactose oxidase homologue from streptomyces lividans
16c5xzkA_



7.1 25
PDB header:sugar binding protein
Chain: A: PDB Molecule:lectin (phosl);
PDBTitle: pholiota squarrosa lectin trimer
17c1w18A_



7.0 32
PDB header:transferase
Chain: A: PDB Molecule:levansucrase;
PDBTitle: crystal structure of levansucrase from gluconacetobacter2 diazotrophicus
18c2yewG_



6.8 59
PDB header:virus
Chain: G: PDB Molecule:capsid protein;
PDBTitle: modeling barmah forest virus structural proteins
19d2fkia1



6.4 12
Fold:Secretion chaperone-like
Superfamily:YjbR-like
Family:YjbR-like
20d1oa8a_



6.4 55
Fold:AXH domain
Superfamily:AXH domain
Family:AXH domain
21c6mx7C_



not modelled 6.2 59
PDB header:virus
Chain: C: PDB Molecule:capsid;
PDBTitle: cryoem structure of chimeric eastern equine encephalitis virus:2 genome-binding capsid n-terminal domain
22d1iwga2



not modelled 6.1 26
Fold:Ferredoxin-like
Superfamily:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
Family:Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
23c5tzpB_



not modelled 5.9 41
PDB header:apoptosis
Chain: B: PDB Molecule:bik;
PDBTitle: crystal structure of fpv039:bik bh3 complex
24c2djtA_



not modelled 5.4 38
PDB header:signaling protein
Chain: A: PDB Molecule:unnamed protein product;
PDBTitle: solution structures of the pdz domain of human unnamed2 protein product
25c1fllX_



not modelled 5.4 50
PDB header:apoptosis
Chain: X: PDB Molecule:b-cell surface antigen cd40;
PDBTitle: molecular basis for cd40 signaling mediated by traf3
26c1fllY_



not modelled 5.3 50
PDB header:apoptosis
Chain: Y: PDB Molecule:b-cell surface antigen cd40;
PDBTitle: molecular basis for cd40 signaling mediated by traf3
27c5xoiA_



not modelled 5.3 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase, 2og-fe oxygenase family protein, putative,
PDBTitle: the structure of osalkbh1
28c5xblD_



not modelled 5.1 41
PDB header:hydrolase/rna
Chain: D: PDB Molecule:associated protein;
PDBTitle: structure of nuclease in complex with associated protein
29c3cyyA_



not modelled 5.0 31
PDB header:peptide binding protein
Chain: A: PDB Molecule:tight junction protein zo-1;
PDBTitle: the crystal structure of zo-1 pdz2 in complex with the cx43 peptide

Binding site prediction 

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