Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0110_(-)_133018_133767
DateTue Jul 23 14:50:15 BST 2019
Unique Job ID9890cda279563a5c
SequenceMRVGPVGHQC ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:37.994 Y:36.622 Z:45.226
Model (left) based on template d3b45a1
Top template information
Fold:Rhomboid-like
Superfamily:Rhomboid-like
Family:Rhomboid-like
Confidence and coverage
Confidence:100.0% Coverage: 68%
169 residues ( 68% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d3b45a1



100.0 20
Fold:Rhomboid-like
Superfamily:Rhomboid-like
Family:Rhomboid-like
2d2nr9a1



100.0 16
Fold:Rhomboid-like
Superfamily:Rhomboid-like
Family:Rhomboid-like
3d2ct1a1



40.1 22
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
4d2aqaa1



38.7 12
Fold:Rubredoxin-like
Superfamily:Nop10-like SnoRNP
Family:Nucleolar RNA-binding protein Nop10-like
5c2crcA_



30.9 40
PDB header:ligase
Chain: A: PDB Molecule:ubiquitin conjugating enzyme 7 interacting
PDBTitle: solution structure of the zf-ranbp domain of the protein2 hbv associated factor
6d2apob1



29.4 13
Fold:Rubredoxin-like
Superfamily:Nop10-like SnoRNP
Family:Nucleolar RNA-binding protein Nop10-like
7d2ey4e1



26.7 20
Fold:Rubredoxin-like
Superfamily:Nop10-like SnoRNP
Family:Nucleolar RNA-binding protein Nop10-like
8c2odxA_



20.4 38
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c oxidase polypeptide iv;
PDBTitle: solution structure of zn(ii)cox4
9c2m0eA_



19.7 43
PDB header:transcription
Chain: A: PDB Molecule:zinc finger and btb domain-containing protein 17;
PDBTitle: solution structure of miz-1 zinc finger 6
10c2ysoA_



18.7 63
PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 95 homolog;
PDBTitle: solution structure of the c2h2 type zinc finger (region 656-2 688) of human zinc finger protein 95 homolog
11c4bs9A_



17.7 25
PDB header:isomerase
Chain: A: PDB Molecule:trud;
PDBTitle: structure of the heterocyclase trud
12d1l1ta3



17.2 24
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
13d1k3xa3



16.9 17
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
14d1ee8a3



16.6 30
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
15d1tdza3



16.2 22
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
16d1r2za3



15.4 22
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
17c4txdA_



14.1 33
PDB header:rna binding protein
Chain: A: PDB Molecule:csc2;
PDBTitle: crystal structure of thermofilum pendens csc2
18d1gnfa_



14.0 20
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
19c2x5cB_



13.8 40
PDB header:viral protein
Chain: B: PDB Molecule:hypothetical protein orf131;
PDBTitle: crystal structure of hypothetical protein orf131 from pyrobaculum2 spherical virus
20c5mg5W_



13.8 56
PDB header:transferase
Chain: W: PDB Molecule:2,4-diacetylphloroglucinol biosynthesis protein;
PDBTitle: a multi-component acyltransferase phlabc from pseudomonas protegens2 soaked with the monoacetylphloroglucinol (mapg)
21d1k82a3



not modelled 13.4 24
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
22c6et9H_



not modelled 11.0 30
PDB header:transferase
Chain: H: PDB Molecule:pfam duf35;
PDBTitle: structure of the acetoacetyl-coa-thiolase/hmg-coa-synthase complex2 from methanothermococcus thermolithotrophicus at 2.75 a
23d2gnra1



not modelled 10.8 40
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:SSO2064-like
24c3k1fM_



not modelled 10.5 33
PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: crystal structure of rna polymerase ii in complex with tfiib
25c1yk0E_



not modelled 10.0 50
PDB header:hormone/growth factor receptor
Chain: E: PDB Molecule:atrial natriuretic factor;
PDBTitle: structure of natriuretic peptide receptor-c complexed with atrial2 natriuretic peptide
26d2k4xa1



not modelled 9.7 25
Fold:Rubredoxin-like
Superfamily:Zn-binding ribosomal proteins
Family:Ribosomal protein S27a
27c6ok1B_



not modelled 8.8 33
PDB header:transport protein
Chain: B: PDB Molecule:chsh2(duf35);
PDBTitle: ltp2-chsh2(duf35) aldolase
28d2dlqa2



not modelled 8.0 33
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
29c5fz5M_



not modelled 7.7 25
PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: transcription initiation complex structures elucidate dna opening (cc)
30c3k7aM_



not modelled 6.5 27
PDB header:transcription
Chain: M: PDB Molecule:transcription initiation factor iib;
PDBTitle: crystal structure of an rna polymerase ii-tfiib complex
31c1t34H_



not modelled 6.3 57
PDB header:signaling protein,membrane protein
Chain: H: PDB Molecule:atrial natriuretic peptide factor;
PDBTitle: rotation mechanism for transmembrane signaling by the atrial2 natriuretic peptide receptor
32d1h21a_



not modelled 6.2 19
Fold:Multiheme cytochromes
Superfamily:Multiheme cytochromes
Family:Di-heme elbow motif
33c2m6oA_



not modelled 6.2 18
PDB header:transcription
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the actinobacterial transcription factor rbpa binds to the principal2 sigma subunit of rna polymerase
34d1x4la2



not modelled 6.0 29
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
35c3vhsA_



not modelled 6.0 33
PDB header:metal binding protein
Chain: A: PDB Molecule:atpase wrnip1;
PDBTitle: crystal structure of ubz of human wrnip1
36c5k2mF_



not modelled 6.0 38
PDB header:biosynthetic protein
Chain: F: PDB Molecule:probable lysine biosynthesis protein;
PDBTitle: bifunctional lysx/argx from thermococcus kodakarensis with lysw-gamma-2 aaa
37d1y0ka1



not modelled 6.0 22
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:PA4535-like
38c5gufA_



not modelled 5.9 13
PDB header:transferase
Chain: A: PDB Molecule:cdp-archaeol synthase;
PDBTitle: structural insight into an intramembrane enzyme for archaeal membrane2 lipids biosynthesis
39c2k2dA_



not modelled 5.9 16
PDB header:metal binding protein
Chain: A: PDB Molecule:ring finger and chy zinc finger domain-
PDBTitle: solution nmr structure of c-terminal domain of human pirh2.2 northeast structural genomics consortium (nesg) target ht2c
40c3uk3D_



not modelled 5.8 25
PDB header:dna/metal binding protein
Chain: D: PDB Molecule:zinc finger protein 217;
PDBTitle: crystal structure of znf217 bound to dna
41d2dlqa4



not modelled 5.8 40
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
42d1ubdc2



not modelled 5.8 27
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
43c3b08H_



not modelled 5.8 23
PDB header:signaling protein/metal binding protein
Chain: H: PDB Molecule:ranbp-type and c3hc4-type zinc finger-containing protein 1;
PDBTitle: crystal structure of the mouse hoil1-l-nzf in complex with linear di-2 ubiquitin
44d1x6ea2



not modelled 5.7 38
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
45c4hc7B_



not modelled 5.3 22
PDB header:transcription/dna
Chain: B: PDB Molecule:trans-acting t-cell-specific transcription factor gata-3;
PDBTitle: crystal structure of the full dna binding domain of gata3-complex 2
46c3vhsB_



not modelled 5.3 43
PDB header:metal binding protein
Chain: B: PDB Molecule:atpase wrnip1;
PDBTitle: crystal structure of ubz of human wrnip1
47c6c08C_



not modelled 5.1 12
PDB header:membrane protein
Chain: C: PDB Molecule:sodium-coupled neutral amino acid transporter 9;
PDBTitle: zebrafish slc38a9 with arginine bound in the cytosol open state
48c4bpo9_



not modelled 5.1 25
PDB header:ribosome
Chain: 9: PDB Molecule:40s ribosomal protein rps31e;
PDBTitle: the crystal structure of the eukaryotic 40s ribosomal subunit in2 complex with eif1 and eif1a - complex 3
49c3wwnB_



not modelled 5.1 50
PDB header:metal binding protein/transferase
Chain: B: PDB Molecule:orff;
PDBTitle: crystal structure of lysz from thermus thermophilus complex with lysw

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Transmembrane helix prediction 

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