Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0121c_(-)_147906_148340
DateTue Jul 23 14:50:16 BST 2019
Unique Job ID95516eda3fbe8a65
SequenceVGEFDPKLRF ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:40.014 Y:39.865 Z:46.836
Model (left) based on template c4zkyB_
Top template information
PDB header:oxidoreductase
Chain: B: PDB Molecule:pyridoxamine 5-phosphate oxidase;
PDBTitle: structure of f420 binding protein, msmeg_6526, from mycobacterium2 smegmatis
Confidence and coverage
Confidence:100.0% Coverage: 97%
139 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4zkyB_



100.0 58
PDB header:oxidoreductase
Chain: B: PDB Molecule:pyridoxamine 5-phosphate oxidase;
PDBTitle: structure of f420 binding protein, msmeg_6526, from mycobacterium2 smegmatis
2d1rfea_



100.0 26
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
3c3u0iA_



100.0 17
PDB header:unknown function
Chain: A: PDB Molecule:probable fad-binding, putative uncharacterized protein;
PDBTitle: crystal structure of a probable fad-binding, putative uncharacterized2 protein from brucella melitensis
4c3f7eB_



100.0 20
PDB header:unknown function
Chain: B: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related, fmn-
PDBTitle: msmeg_3380 f420 reductase
5c2iabB_



100.0 21
PDB header:unknown function
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a protein with fmn-binding split barrel fold2 (np_828636.1) from streptomyces avermitilis at 2.00 a resolution
6d2asfa1



100.0 22
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
7d2hq9a1



100.0 19
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
8d2fg9a1



100.0 14
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
9c3fkhB_



99.9 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative pyridoxamine 5'-phosphate oxidase;
PDBTitle: crystal structure of putative pyridoxamine 5'-phosphate oxidase2 (np_601736.1) from corynebacterium glutamicum atcc 13032 kitasato at3 2.51 a resolution
10d2i02a1



99.9 14
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
11c3tgvD_



99.9 18
PDB header:heme binding protein
Chain: D: PDB Molecule:heme-binding protein hutz;
PDBTitle: crystal structure of hutz,the heme storsge protein from vibrio2 cholerae
12c3db0B_



99.9 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:lin2891 protein;
PDBTitle: crystal structure of putative pyridoxamine 5'-phosphate oxidase2 (np_472219.1) from listeria innocua at 2.00 a resolution
13d1w9aa_



99.9 20
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
14c3ec6A_



99.9 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:general stress protein 26;
PDBTitle: crystal structure of the general stress protein 26 from bacillus2 anthracis str. sterne
15c2htiA_



99.9 15
PDB header:fmn-binding protein
Chain: A: PDB Molecule:bh0577 protein;
PDBTitle: crystal structure of a flavin-nucleotide-binding protein (bh_0577)2 from bacillus halodurans at 2.50 a resolution
16d2htia1



99.9 15
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
17c6eciQ_



99.9 24
PDB header:fad-binding protein
Chain: Q: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related, fmn-binding
PDBTitle: structure of the fad binding protein msmeg_5243 from mycobacterium2 smegmatis
18d2fhqa1



99.9 18
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
19c2re7A_



99.9 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase related2 protein (psyc_0186) from psychrobacter arcticus 273-4 at 2.50 a3 resolution
20d2fura1



99.9 14
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
21c3cp3A_



not modelled 99.9 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of conserved protein of unknown function dip18742 from corynebacterium diphtheriae
22d2hq7a1



not modelled 99.9 13
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
23d1vl7a_



not modelled 99.9 15
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
24c5escD_



not modelled 99.9 20
PDB header:oxidoreductase
Chain: D: PDB Molecule:hupz;
PDBTitle: crystal structure of group a streptococcus hupz
25c6rk0A_



not modelled 99.9 18
PDB header:flavoprotein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: structure of the flavocytochrome anf3 from azotobacter vinelandii
26c4ybnB_



not modelled 99.9 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:flavin-nucleotide-binding protein;
PDBTitle: structure of the fad and heme binding protein msmeg_4975 from2 mycobacterium smegmatis
27d2vpaa1



not modelled 99.9 22
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
28c3u34D_



not modelled 99.9 13
PDB header:protein binding
Chain: D: PDB Molecule:general stress protein;
PDBTitle: crystal structure of the general stress fmn/fad binding protein from2 the phytopathogen xanthomonas citri
29c3dmbA_



not modelled 99.9 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative general stress protein 26 with a pnp-oxidase like
PDBTitle: crystal structure of a putative general stress family protein2 (xcc2264) from xanthomonas campestris pv. campestris at 2.30 a3 resolution
30c2ig6B_



not modelled 99.9 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:nimc/nima family protein;
PDBTitle: crystal structure of a nimc/nima family protein (ca_c2569) from2 clostridium acetobutylicum at 1.80 a resolution
31d2arza1



not modelled 99.9 20
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
32c2htdB_



not modelled 99.9 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:predicted flavin-nucleotide-binding protein from cog3576
PDBTitle: crystal structure of a putative pyridoxamine 5'-phosphate oxidase2 (ldb0262) from lactobacillus delbrueckii subsp. at 1.60 a resolution
33c2hhzA_



not modelled 99.8 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase-related2 protein (ssuidraft_2804) from streptococcus suis 89/1591 at 2.00 a3 resolution
34c5bncB_



not modelled 99.8 27
PDB header:heme binding protein
Chain: B: PDB Molecule:heme binding protein msmeg_6519;
PDBTitle: structure of heme binding protein msmeg_6519 from mycobacterium2 smegmatis
35c3gasA_



not modelled 99.8 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:heme oxygenase;
PDBTitle: crystal structure of helicobacter pylori heme oxygenase hugz2 in complex with heme
36c2qeaB_



not modelled 99.8 12
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative general stress protein 26;
PDBTitle: crystal structure of a putative general stress protein 26 (jann_0955)2 from jannaschia sp. ccs1 at 2.46 a resolution
37c3dnhB_



not modelled 99.8 19
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein atu2129;
PDBTitle: the crystal structure of the protein atu2129 (unknown function) from2 agrobacterium tumefaciens str. c58
38d1flma_



not modelled 99.8 24
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
39c2q9kA_



not modelled 99.8 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative oxidoreductase (exig_1997) from2 exiguobacterium sibiricum 255-15 at 1.59 a resolution
40c2ol5B_



not modelled 99.7 11
PDB header:transcription regulator
Chain: B: PDB Molecule:pai 2 protein;
PDBTitle: crystal structure of a protease synthase and sporulation negative2 regulatory protein pai 2 from bacillus stearothermophilus
41d1nrga_



not modelled 99.7 24
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
42c1nrgA_



not modelled 99.7 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxine 5'-phosphate oxidase;
PDBTitle: structure and properties of recombinant human pyridoxine-5'-phosphate2 oxidase
43d1dnla_



not modelled 99.7 20
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
44d1t9ma_



not modelled 99.7 24
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
45d1ty9a_



not modelled 99.7 25
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
46c2a2jA_



not modelled 99.7 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxamine 5'-phosphate oxidase;
PDBTitle: crystal structure of a putative pyridoxine 5'-phosphate oxidase2 (rv2607) from mycobacterium tuberculosis
47c4hmwB_



not modelled 99.7 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:pyridoxamine 5'-phosphate oxidase;
PDBTitle: crystal structure of phzg from burkholderia lata 383
48d2a2ja1



not modelled 99.7 20
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
49c2ou5B_



not modelled 99.6 19
PDB header:flavoprotein
Chain: B: PDB Molecule:pyridoxamine 5'-phosphate oxidase-related, fmn-binding;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase-related fmn-2 binding protein (jann_0254) from jannaschia sp. ccs1 at 1.60 a3 resolution
50d1xhna1



not modelled 99.6 18
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
51c4n7rD_



not modelled 99.4 21
PDB header:oxidoreductase/protein binding
Chain: D: PDB Molecule:genomic dna, chromosome 3, p1 clone: mxl8;
PDBTitle: crystal structure of arabidopsis glutamyl-trna reductase in complex2 with its binding protein
52d1ci0a_



not modelled 99.4 13
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
53c2i51B_



not modelled 99.3 17
PDB header:flavoprotein
Chain: B: PDB Molecule:uncharacterized conserved protein of cog5135;
PDBTitle: crystal structure of a pyridoxamine 5'-phosphate oxidase-related, fmn2 binding protein (npun_f5749) from nostoc punctiforme pcc 73102 at3 1.40 a resolution
54c3r5zB_



not modelled 98.8 19
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of a deazaflavin-dependent reductase from nocardia2 farcinica, with co-factor f420
55c3r5yC_



not modelled 98.8 25
PDB header:unknown function
Chain: C: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of a deazaflavin-dependent nitroreductase from nocardia2 farcinica, with co-factor f420
56c3r5wO_



not modelled 98.7 26
PDB header:oxidoreductase
Chain: O: PDB Molecule:deazaflavin-dependent nitroreductase;
PDBTitle: structure of ddn, the deazaflavin-dependent nitroreductase from2 mycobacterium tuberculosis involved in bioreductive activation of pa-3 824, with co-factor f420
57c4y9iA_



not modelled 98.7 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:mycobacterium tuberculosis paralogous family 11;
PDBTitle: structure of f420-h2 dependent reductase (fdr-a) msmeg_2027
58c3ba3A_



not modelled 98.6 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxamine 5'-phosphate oxidase-like protein;
PDBTitle: crystal structure of pyridoxamine 5'-phosphate oxidase-like protein2 (np_783940.1) from lactobacillus plantarum at 1.55 a resolution
59c3h96B_



not modelled 98.6 18
PDB header:flavoprotein
Chain: B: PDB Molecule:f420-h2 dependent reductase a;
PDBTitle: msmeg_3358 f420 reductase
60d2ptfa1



not modelled 96.8 23
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:MTH863-like
61c2ptfB_



not modelled 96.3 21
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein mth_863;
PDBTitle: crystal structure of protein mth_863 from methanobacterium2 thermoautotrophicum bound to fmn
62c3fgeA_



not modelled 95.7 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative flavin reductase with split barrel domain;
PDBTitle: crystal structure of putative flavin reductase with split barrel2 domain (yp_750721.1) from shewanella frigidimarina ncimb 400 at 1.743 a resolution
63d2imla1



not modelled 95.3 23
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:MTH863-like
64c3b5mD_



not modelled 94.6 16
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of conserved uncharacterized protein from2 rhodopirellula baltica
65c3bpkB_



not modelled 94.5 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:nitrilotriacetate monooxygenase component b;
PDBTitle: crystal structure of nitrilotriacetate monooxygenase component b from2 bacillus cereus
66c3e4vA_



not modelled 94.4 15
PDB header:flavoprotein
Chain: A: PDB Molecule:nadh:fmn oxidoreductase like protein;
PDBTitle: crystal structure of nadh:fmn oxidoreductase like protein in complex2 with fmn (yp_544701.1) from methylobacillus flagellatus kt at 1.40 a3 resolution
67c4z85A_



not modelled 94.1 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:2-nitrobenzoate nitroreductase;
PDBTitle: crystal structur of pseudomonas fluorescens 2-nitrobenzoate 2-2 nitroreductase nbaa
68d1ejea_



not modelled 94.1 15
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:NADH:FMN oxidoreductase-like
69d2nr4a1



not modelled 91.3 16
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:MTH863-like
70c2d5mA_



not modelled 84.9 15
PDB header:electron transport
Chain: A: PDB Molecule:flavoredoxin;
PDBTitle: flavoredoxin of desulfovibrio vulgaris (miyazaki f)
71c3hmzA_



not modelled 74.6 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavin reductase domain protein, fmn-binding;
PDBTitle: crystal structure of a fmn-binding domain of flavin reductases-like2 enzyme (sbal_0626) from shewanella baltica os155 at 1.50 a resolution
72c3bnkB_



not modelled 69.3 16
PDB header:electron transport
Chain: B: PDB Molecule:flavoredoxin;
PDBTitle: x-ray crystal structure of flavoredoxin from methanosarcina2 acetivorans
73c3pftA_



not modelled 63.7 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavin reductase;
PDBTitle: crystal structure of untagged c54a mutant flavin reductase (dszd) in2 complex with fmn from mycobacterium goodii
74c2r6vA_



not modelled 58.6 8
PDB header:flavoprotein
Chain: A: PDB Molecule:uncharacterized protein ph0856;
PDBTitle: crystal structure of fmn-binding protein (np_142786.1) from pyrococcus2 horikoshii at 1.35 a resolution
75c4l82D_



not modelled 52.7 10
PDB header:oxidoreductase
Chain: D: PDB Molecule:rifea.00250.a;
PDBTitle: structure of a putative oxidoreductase from rickettsia felis
76c4f07A_



not modelled 42.6 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:styrene monooxygenase component 2;
PDBTitle: structure of the styrene monooxygenase flavin reductase (smob) from2 pseudomonas putida s12
77c2qckA_



not modelled 29.1 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavin reductase domain protein;
PDBTitle: crystal structure of flavin reductase domain protein (yp_831077.1)2 from arthrobacter sp. fb24 at 1.90 a resolution
78d1usca_



not modelled 24.7 16
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:NADH:FMN oxidoreductase-like
79d1rz0a_



not modelled 23.7 19
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:NADH:FMN oxidoreductase-like
80c3k87B_



not modelled 23.6 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:chlorophenol-4-monooxygenase component 1;
PDBTitle: crystal structure of nadh:fad oxidoreductase (tftc) - fad2 complex
81c2xi5D_



not modelled 20.5 16
PDB header:transferase
Chain: D: PDB Molecule:rna polymerase l;
PDBTitle: n-terminal endonuclease domain of la crosse virus l-protein
82c2xi7B_



not modelled 20.4 16
PDB header:transferase
Chain: B: PDB Molecule:rna polymerase l;
PDBTitle: n-terminal endonuclease domain of la crosse virus l-protein
83c3rh7A_



not modelled 20.2 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:hypothetical oxidoreductase;
PDBTitle: crystal structure of a putative oxidoreductase (sma0793) from2 sinorhizobium meliloti 1021 at 3.00 a resolution
84c5b42A_



not modelled 15.8 12
PDB header:dna binding protein
Chain: A: PDB Molecule:dna mismatch repair protein mutl;
PDBTitle: crystal structure of the c-terminal endonuclease domain of aquifex2 aeolicus mutl.
85c2r0xA_



not modelled 15.1 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:possible flavin reductase;
PDBTitle: crystal structure of a putative flavin reductase (ycdh, hs_1225) from2 haemophilus somnus 129pt at 1.06 a resolution
86c4xhyA_



not modelled 15.0 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavin reductase domain protein, fmn-binding protein;
PDBTitle: nadh:fmn oxidoreductase from paracoccus denitrificans
87d1i0ra_



not modelled 14.7 9
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:NADH:FMN oxidoreductase-like
88c2l82A_



not modelled 12.5 23
PDB header:de novo protein
Chain: A: PDB Molecule:designed protein or32;
PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or32
89c3cr8C_



not modelled 11.8 22
PDB header:transferase
Chain: C: PDB Molecule:sulfate adenylyltransferase, adenylylsulfate kinase;
PDBTitle: hexameric aps kinase from thiobacillus denitrificans
90c3cb0B_



not modelled 11.6 9
PDB header:oxidoreductase
Chain: B: PDB Molecule:4-hydroxyphenylacetate 3-monooxygenase;
PDBTitle: cobr
91d1zzka1



not modelled 11.5 13
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
92c3nfwB_



not modelled 10.8 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:flavin reductase-like, fmn-binding protein;
PDBTitle: crystal structure of nitrilotriacetate monooxygenase component b2 (a0r521 homolog) from mycobacterium thermoresistibile
93c2d38A_



not modelled 10.4 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:hypothetical nadh-dependent fmn oxidoreductase;
PDBTitle: the crystal structure of flavin reductase hpac complexed with nadp+
94d1g8fa1



not modelled 9.3 19
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:ATP sulfurylase N-terminal domain
95c6igzF_



not modelled 8.7 50
PDB header:plant protein
Chain: F: PDB Molecule:psaf;
PDBTitle: structure of psi-lhci
96c4kt0F_



not modelled 8.6 50
PDB header:electron transport
Chain: F: PDB Molecule:photosystem i subunit iii;
PDBTitle: crystal structure of a virus like photosystem i from the2 cyanobacterium synechocystis pcc 6803
97c3kk4B_



not modelled 8.5 19
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein bp1543;
PDBTitle: uncharacterized protein bp1543 from bordetella pertussis tohama i
98c6ijjF_



not modelled 8.4 50
PDB header:membrane protein
Chain: F: PDB Molecule:psaf;
PDBTitle: photosystem i of chlamydomonas reinhardtii
99c4b8tA_



not modelled 7.8 10
PDB header:transcription/rna
Chain: A: PDB Molecule:kh-type splicing regulatory protein;
PDBTitle: rna binding protein solution structure of the third kh2 domain of ksrp in complex with the g-rich target sequence.

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite