Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0122_(-)_148489_148857
DateTue Jul 23 14:50:16 BST 2019
Unique Job ID65292ea3ca00bba6
SequenceLAGSVSAAAG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:32.625 Y:27.126 Z:24.660
Model (left) based on template c2equA_
Top template information
PDB header:protein binding
Chain: A: PDB Molecule:phd finger protein 20-like 1;
PDBTitle: solution structure of the tudor domain of phd finger2 protein 20-like 1
Confidence and coverage
Confidence: 46.5% Coverage: 30%
37 residues ( 30% of your sequence) have been modelled with 46.5% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2equA_



46.5 30
PDB header:protein binding
Chain: A: PDB Molecule:phd finger protein 20-like 1;
PDBTitle: solution structure of the tudor domain of phd finger2 protein 20-like 1
2c2yf2C_



39.9 29
PDB header:immune system
Chain: C: PDB Molecule:c4b binding protein;
PDBTitle: crystal structure of the oligomerisation domain of c4b-binding2 protein from gallus gallus
3c3w0lD_



27.1 43
PDB header:transferase/transferase inhibitor
Chain: D: PDB Molecule:glucokinase regulatory protein;
PDBTitle: the crystal structure of xenopus glucokinase and glucokinase2 regulatory protein complex
4c1qfnB_



26.8 78
PDB header:electron transport/oxidoreductase
Chain: B: PDB Molecule:protein (ribonucleoside-diphosphate reductase 1);
PDBTitle: glutaredoxin-1-ribonucleotide reductase b1 mixed disulfide2 bond
5c4bbaA_



26.2 24
PDB header:protein-binding protein
Chain: A: PDB Molecule:glucokinase regulatory protein;
PDBTitle: crystal structure of glucokinase regulatory protein complexed to2 phosphate
6c2kzbA_



24.8 46
PDB header:protein transport
Chain: A: PDB Molecule:autophagy-related protein 19;
PDBTitle: solution structure of alpha-mannosidase binding domain of atg19
7d1npla_



22.6 29
Fold:beta-Prism II
Superfamily:alpha-D-mannose-specific plant lectins
Family:alpha-D-mannose-specific plant lectins
8c3r0eC_



22.0 24
PDB header:sugar binding protein
Chain: C: PDB Molecule:lectin;
PDBTitle: structure of remusatia vivipara lectin
9d1v54k_



19.8 67
Fold:Single transmembrane helix
Superfamily:Mitochondrial cytochrome c oxidase subunit VIIb
Family:Mitochondrial cytochrome c oxidase subunit VIIb
10c2y69X_



19.8 67
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 7b;
PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular oxygen
11c2ov2O_



18.5 11
PDB header:protein binding/transferase
Chain: O: PDB Molecule:serine/threonine-protein kinase pak 4;
PDBTitle: the crystal structure of the human rac3 in complex with the crib2 domain of human p21-activated kinase 4 (pak4)
12c4lc9A_



17.7 20
PDB header:transferase/transferase regulator
Chain: A: PDB Molecule:glucokinase regulatory protein;
PDBTitle: structural basis for regulation of human glucokinase by glucokinase2 regulatory protein
13c2kzkA_



16.4 46
PDB header:protein transport
Chain: A: PDB Molecule:uncharacterized protein yol083w;
PDBTitle: solution structure of alpha-mannosidase binding domain of atg34
14d1qw1a1



14.3 22
Fold:SH3-like barrel
Superfamily:C-terminal domain of transcriptional repressors
Family:FeoA-like
15d1vqod1



14.1 31
Fold:RL5-like
Superfamily:RL5-like
Family:Ribosomal protein L5
16c2ldmA_



13.8 24
PDB header:transcription/protein binding
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of human phf20 tudor2 domain bound to a p53 segment2 containing a dimethyllysine analog p53k370me2
17d1b2pa_



13.4 29
Fold:beta-Prism II
Superfamily:alpha-D-mannose-specific plant lectins
Family:alpha-D-mannose-specific plant lectins
18c2odbB_



13.2 16
PDB header:protein binding
Chain: B: PDB Molecule:serine/threonine-protein kinase pak 6;
PDBTitle: the crystal structure of human cdc42 in complex with the crib domain2 of human p21-activated kinase 6 (pak6)
19d1odha_



12.9 25
Fold:GCM domain
Superfamily:GCM domain
Family:GCM domain
20c1vraB_



12.9 29
PDB header:transferase
Chain: B: PDB Molecule:arginine biosynthesis bifunctional protein argj;
PDBTitle: crystal structure of arginine biosynthesis bifunctional protein argj2 (10175521) from bacillus halodurans at 2.00 a resolution
21c2w80E_



not modelled 12.8 21
PDB header:immune system
Chain: E: PDB Molecule:complement factor h;
PDBTitle: structure of a complex between neisseria meningitidis2 factor h binding protein and ccps 6-7 of human complement3 factor h
22c4aydA_



not modelled 12.7 21
PDB header:immune system
Chain: A: PDB Molecule:complement factor h;
PDBTitle: structure of a complex between ccps 6 and 7 of human2 complement factor h and neisseria meningitidis fhbp3 variant 1 r106a mutant
23c5gkeB_



not modelled 12.4 20
PDB header:hydrolase/dna
Chain: B: PDB Molecule:endonuclease endoms;
PDBTitle: structure of endoms-dsdna1 complex
24c5d0bB_



not modelled 12.3 45
PDB header:oxidoreductase/rna
Chain: B: PDB Molecule:epoxyqueuosine reductase;
PDBTitle: crystal structure of epoxyqueuosine reductase with a trna-tyr2 epoxyqueuosine-modified trna stem loop
25c5d6sB_



not modelled 12.2 54
PDB header:oxidoreductase
Chain: B: PDB Molecule:epoxyqueuosine reductase;
PDBTitle: structure of epoxyqueuosine reductase from streptococcus thermophilus.
26c4jhnD_



not modelled 11.8 11
PDB header:unknown function
Chain: D: PDB Molecule:x-linked retinitis pigmentosa gtpase regulator;
PDBTitle: the crystal structure of the rpgr rcc1-like domain
27c2kx2A_



not modelled 11.7 56
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: the solution structure of mth1821
28c3faoA_



not modelled 11.6 58
PDB header:hydrolase
Chain: A: PDB Molecule:non-structural protein;
PDBTitle: crystal structure of s118a mutant 3clsp of prrsv
29c2ra9A_



not modelled 11.5 36
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein duf1285;
PDBTitle: crystal structure of a duf1285 family protein (sbal_2486) from2 shewanella baltica os155 at 1.40 a resolution
30c1fllX_



not modelled 11.4 47
PDB header:apoptosis
Chain: X: PDB Molecule:b-cell surface antigen cd40;
PDBTitle: molecular basis for cd40 signaling mediated by traf3
31c3qiiA_



not modelled 11.4 22
PDB header:transcription regulator
Chain: A: PDB Molecule:phd finger protein 20;
PDBTitle: crystal structure of tudor domain 2 of human phd finger protein 20
32c1fllY_



not modelled 11.1 47
PDB header:apoptosis
Chain: Y: PDB Molecule:b-cell surface antigen cd40;
PDBTitle: molecular basis for cd40 signaling mediated by traf3
33c3uaqB_



not modelled 10.5 44
PDB header:protein binding
Chain: B: PDB Molecule:lbpb b-lobe;
PDBTitle: crystal structure of the n-lobe domain of lactoferrin binding protein2 b (lbpb) of moraxella bovis
34c1f3mB_



not modelled 10.4 42
PDB header:transferase
Chain: B: PDB Molecule:serine/threonine-protein kinase pak-alpha;
PDBTitle: crystal structure of human serine/threonine kinase pak1
35c3en9B_



not modelled 10.4 22
PDB header:hydrolase
Chain: B: PDB Molecule:o-sialoglycoprotein endopeptidase/protein kinase;
PDBTitle: structure of the methanococcus jannaschii kae1-bud32 fusion2 protein
36c1xniI_



not modelled 10.2 24
PDB header:cell cycle
Chain: I: PDB Molecule:tumor suppressor p53-binding protein 1;
PDBTitle: tandem tudor domain of 53bp1
37c4a1cD_



not modelled 10.1 25
PDB header:ribosome
Chain: D: PDB Molecule:60s ribosomal protein l11;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4.
38d2ed6a1



not modelled 10.1 35
Fold:WSSV envelope protein-like
Superfamily:WSSV envelope protein-like
Family:WSSV envelope protein-like
39d1mbma_



not modelled 10.0 40
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Viral proteases
40c3p8dB_



not modelled 9.7 21
PDB header:protein binding
Chain: B: PDB Molecule:medulloblastoma antigen mu-mb-50.72;
PDBTitle: crystal structure of the second tudor domain of human phf20 (homodimer2 form)
41d2rb6a1



not modelled 9.2 28
Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:YgdI/YgdR-like
42d1i7na1



not modelled 9.1 20
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:Synapsin domain
43d2rd1a1



not modelled 8.8 22
Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:YgdI/YgdR-like
44d1vr3a1



not modelled 8.6 26
Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Acireductone dioxygenase
45c3c6fD_



not modelled 8.5 14
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:yetf protein;
PDBTitle: crystal structure of protein bsu07140 from bacillus subtilis
46c1s1iJ_



not modelled 8.5 27
PDB header:ribosome
Chain: J: PDB Molecule:60s ribosomal protein l11;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1i, contains 60s subunit. the 40s4 ribosomal subunit is in file 1s1h.
47d3bdua1



not modelled 8.4 28
Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:YgdI/YgdR-like
48c2re3A_



not modelled 8.4 50
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf1285 family protein (spo_0140) from2 silicibacter pomeroyi dss-3 at 2.50 a resolution
49c1e0aB_



not modelled 8.2 37
PDB header:signalling protein/kinase
Chain: B: PDB Molecule:serine/threonine-protein kinase pak-alpha;
PDBTitle: cdc42 complexed with the gtpase binding domain of p212 activated kinase
50c5gsmB_



not modelled 8.1 16
PDB header:hydrolase
Chain: B: PDB Molecule:exo-beta-d-glucosaminidase;
PDBTitle: glycoside hydrolase b with product
51c4u9cA_



not modelled 8.1 47
PDB header:lactoferrin-binding protein
Chain: A: PDB Molecule:lactoferrin-binding protein b;
PDBTitle: structure of the lbpb n-lobe from neisseria meningitidis
52c4aydB_



not modelled 8.0 21
PDB header:immune system
Chain: B: PDB Molecule:complement factor h;
PDBTitle: structure of a complex between ccps 6 and 7 of human2 complement factor h and neisseria meningitidis fhbp3 variant 1 r106a mutant
53c3it4B_



not modelled 7.9 21
PDB header:transferase
Chain: B: PDB Molecule:arginine biosynthesis bifunctional protein argj
PDBTitle: the crystal structure of ornithine acetyltransferase from2 mycobacterium tuberculosis (rv1653) at 1.7 a
54d2ra2a1



not modelled 7.5 29
Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:YgdI/YgdR-like
55c3fetA_



not modelled 7.1 13
PDB header:electron transport
Chain: A: PDB Molecule:electron transfer flavoprotein subunit alpha related
PDBTitle: crystal structure of the electron transfer flavoprotein subunit alpha2 related protein ta0212 from thermoplasma acidophilum
56d1gesa3



not modelled 7.0 18
Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
57c2eoyA_



not modelled 6.8 86
PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 473;
PDBTitle: solution structure of the c2h2 type zinc finger (region 557-2 589) of human zinc finger protein 473
58c2ybyA_



not modelled 6.7 24
PDB header:immune system
Chain: A: PDB Molecule:complement factor h;
PDBTitle: structure of domains 6 and 7 of the mouse complement regulator2 factor h
59d1l4db_



not modelled 6.7 16
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Staphylokinase/streptokinase
Family:Staphylokinase/streptokinase
60c3zf7L_



not modelled 6.6 29
PDB header:ribosome
Chain: L: PDB Molecule:60s ribosomal protein l11, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
61d2k57a1



not modelled 6.4 29
Fold:Sm-like fold
Superfamily:Sm-like ribonucleoproteins
Family:YgdI/YgdR-like
62d1vlva1



not modelled 6.4 29
Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
63c3c00B_



not modelled 6.2 27
PDB header:membrane protein, protein transport
Chain: B: PDB Molecule:escu;
PDBTitle: crystal structural of the mutated g247t escu/spas c-terminal domain
64c4aqqA_



not modelled 6.2 64
PDB header:viral protein
Chain: A: PDB Molecule:l2 protein iii (penton base);
PDBTitle: dodecahedron formed of penton base protein from adenovirus ad3
65c4d77A_



not modelled 6.0 33
PDB header:signaling protein
Chain: A: PDB Molecule:gliomedin;
PDBTitle: high-resolution structure of the extracellular olfactomedin2 domain from gliomedin
66c1vgpA_



not modelled 5.9 39
PDB header:transferase
Chain: A: PDB Molecule:373aa long hypothetical citrate synthase;
PDBTitle: crystal structure of an isozyme of citrate synthase from sulfolbus2 tokodaii strain7
67d1k7ka_



not modelled 5.7 17
Fold:Anticodon-binding domain-like
Superfamily:ITPase-like
Family:ITPase (Ham1)
68d1pk8a1



not modelled 5.7 23
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:Synapsin domain
69c4pdtA_



not modelled 5.6 26
PDB header:sugar binding protein
Chain: A: PDB Molecule:mannose recognizing lectin;
PDBTitle: japanese marasmius oreades lectin
70c2c6xA_



not modelled 5.6 45
PDB header:transferase
Chain: A: PDB Molecule:citrate synthase 1;
PDBTitle: structure of bacillus subtilis citrate synthase
71c5o7hE_



not modelled 5.6 35
PDB header:antiviral protein
Chain: E: PDB Molecule:cas7fv;
PDBTitle: structure of the cascade-i-fv complex from shewanella putrefaciens
72c2qqpD_



not modelled 5.6 67
PDB header:virus
Chain: D: PDB Molecule:small capsid protein;
PDBTitle: crystal structure of authentic providence virus
73d1aj8a_



not modelled 5.3 33
Fold:Citrate synthase
Superfamily:Citrate synthase
Family:Citrate synthase
74c1o94D_



not modelled 5.3 30
PDB header:electron transport
Chain: D: PDB Molecule:electron transfer flavoprotein alpha-subunit;
PDBTitle: ternary complex between trimethylamine dehydrogenase and2 electron transferring flavoprotein
75c4xi7A_



not modelled 5.1 33
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase mib1;
PDBTitle: crystal structure of the mzm-rep domains of mind bomb 1 in complex2 with jagged1 n-box peptide
76c2x0dA_



not modelled 5.1 25
PDB header:transferase
Chain: A: PDB Molecule:wsaf;
PDBTitle: apo structure of wsaf
77c2vzkD_



not modelled 5.1 21
PDB header:transferase
Chain: D: PDB Molecule:glutamate n-acetyltransferase 2 beta chain;
PDBTitle: structure of the acyl-enzyme complex of an n-terminal nucleophile2 (ntn) hydrolase, oat2
78d1jida_



not modelled 5.0 29
Fold:SRP19
Superfamily:SRP19
Family:SRP19
79c4d4pG_



not modelled 5.0 32
PDB header:translation
Chain: G: PDB Molecule:protein ats1, diphthamide biosynthesis protein 3;
PDBTitle: crystal structure of the kti11 kti13 heterodimer spacegroup p65

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