Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0123_(-)_148854_149222
DateTue Jul 23 14:50:16 BST 2019
Unique Job ID49aab1bef1444be8
SequenceMTKKPRNPAD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:25.938 Y:26.100 Z:30.987
Model (left) based on template c2k5jB_
Top template information
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
Confidence and coverage
Confidence: 74.4% Coverage: 31%
38 residues ( 31% of your sequence) have been modelled with 74.4% confidence by the single highest scoring template.
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Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2k5jB_



74.4 21
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
2c2rbfB_



65.2 15
PDB header:oxidoreductase/dna
Chain: B: PDB Molecule:bifunctional protein puta;
PDBTitle: structure of the ribbon-helix-helix domain of escherichia coli puta2 (puta52) complexed with operator dna (o2)
3c6iyaD_



63.6 33
PDB header:antitoxin
Chain: D: PDB Molecule:transcriptional regulator copg family;
PDBTitle: structure of the dna binding domain of antitoxin copaso
4c2k9iB_



61.8 21
PDB header:dna binding protein
Chain: B: PDB Molecule:uncharacterized protein orf56;
PDBTitle: nmr structure of plasmid copy control protein orf56 from sulfolobus2 islandicus
5c5aj3p_



33.9 35
PDB header:ribosome
Chain: P: PDB Molecule:mitoribosomal protein bs16m, mrps16;
PDBTitle: structure of the small subunit of the mammalian mitoribosome
6c3e7kF_



31.8 69
PDB header:membrane protein
Chain: F: PDB Molecule:trpm7 channel;
PDBTitle: crystal structure of an antiparallel coiled-coil tetramerization2 domain from trpm7 channels
7c3kk4B_



23.1 29
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein bp1543;
PDBTitle: uncharacterized protein bp1543 from bordetella pertussis tohama i
8c3f41B_



22.3 16
PDB header:hydrolase
Chain: B: PDB Molecule:phytase;
PDBTitle: structure of the tandemly repeated protein tyrosine2 phosphatase like phytase from mitsuokella multacida
9d2uubr1



21.0 69
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Ribosomal protein S18
Family:Ribosomal protein S18
10c5aj3R_



20.9 33
PDB header:ribosome
Chain: R: PDB Molecule:mitoribosomal protein bs18m, mrps18c;
PDBTitle: structure of the small subunit of the mammalian mitoribosome
11d2qalr1



20.8 38
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Ribosomal protein S18
Family:Ribosomal protein S18
12d1q9ja2



18.6 13
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:NRPS condensation domain (amide synthase)
13c6dzkr_



18.3 41
PDB header:ribosome
Chain: R: PDB Molecule:
PDBTitle: cryo-em structure of mycobacterium smegmatis c(minus) 30s ribosomal2 subunit with mpy
14d1i94r_



18.0 65
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Ribosomal protein S18
Family:Ribosomal protein S18
15d1y0na_



17.4 50
Fold:YehU-like
Superfamily:YehU-like
Family:YehU-like
16c5o5jR_



17.1 29
PDB header:ribosome
Chain: R: PDB Molecule:30s ribosomal protein s18 2;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
17c3j0xU_



16.7 40
PDB header:ribosome
Chain: U: PDB Molecule:30s ribosomal protein s18;
PDBTitle: structural characterization of mrna-trna translocation intermediates2 (30s ribosome of class 4b of the six classes)
18c3df1R_



13.7 38
PDB header:ribosome
Chain: R: PDB Molecule:30s ribosomal protein s18;
PDBTitle: crystal structure of the bacterial ribosome from escherichia coli in2 complex with hygromycin b. this file contains the 30s subunit of the3 first 70s ribosome, with hygromycin b bound. the entire crystal4 structure contains two 70s ribosomes.
19d1h3ob_



13.0 24
Fold:Histone-fold
Superfamily:Histone-fold
Family:TBP-associated factors, TAFs
20c3bbnR_



12.9 44
PDB header:ribosome
Chain: R: PDB Molecule:ribosomal protein s18;
PDBTitle: homology model for the spinach chloroplast 30s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome.
21d2ay0a1



not modelled 12.6 14
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:PutA pre-N-terminal region-like
22c6hqaK_



not modelled 11.7 40
PDB header:transcription
Chain: K: PDB Molecule:subunit (61/68 kda) of tfiid and saga complexes;
PDBTitle: molecular structure of promoter-bound yeast tfiid
23d2fug21



not modelled 10.6 34
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:NQO2-like
24c2vsqA_



not modelled 10.2 16
PDB header:ligase
Chain: A: PDB Molecule:surfactin synthetase subunit 3;
PDBTitle: structure of surfactin a synthetase c (srfa-c), a nonribosomal peptide2 synthetase termination module
25c5mjyE_



not modelled 9.7 44
PDB header:hydrolase
Chain: E: PDB Molecule:zinc finger fyve domain-containing protein 9;
PDBTitle: crystal structure of the his domain protein tyrosine phosphatase (hd-2 ptp/ptpn23) bro1 domain (sara complex structure)
26c5mjyF_



not modelled 9.7 44
PDB header:hydrolase
Chain: F: PDB Molecule:zinc finger fyve domain-containing protein 9;
PDBTitle: crystal structure of the his domain protein tyrosine phosphatase (hd-2 ptp/ptpn23) bro1 domain (sara complex structure)
27c6a6xC_



not modelled 9.6 39
PDB header:toxin
Chain: C: PDB Molecule:antitoxin maze7;
PDBTitle: the crystal structure of the mtb maze-mazf-mt9 complex
28c3wqtB_



not modelled 8.7 24
PDB header:structural genomics
Chain: B: PDB Molecule:cell division protein ftsa;
PDBTitle: staphylococcus aureus ftsa complexed with amppnp
29d1u8va2



not modelled 7.5 36
Fold:Acyl-CoA dehydrogenase NM domain-like
Superfamily:Acyl-CoA dehydrogenase NM domain-like
Family:Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
30d1tkna_



not modelled 7.1 29
Fold:STAT-like
Superfamily:CAPPD, an extracellular domain of amyloid beta A4 protein
Family:CAPPD, an extracellular domain of amyloid beta A4 protein
31c1qz7B_



not modelled 6.9 75
PDB header:cell adhesion
Chain: B: PDB Molecule:axin;
PDBTitle: beta-catenin binding domain of axin in complex with beta-2 catenin
32d1wi0a_



not modelled 6.4 37
Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:PB1 domain
33c4uzzB_



not modelled 6.3 55
PDB header:motor protein
Chain: B: PDB Molecule:intraflagellar transporter-like protein;
PDBTitle: crystal structure of the ttift52-46 complex
34c2aj1A_



not modelled 6.3 26
PDB header:hydrolase
Chain: A: PDB Molecule:probable cadmium-transporting atpase;
PDBTitle: solution structure of apocada
35c6ckaB_



not modelled 6.2 34
PDB header:viral protein
Chain: B: PDB Molecule:paratox;
PDBTitle: crystal structure of paratox
36c4ic7B_



not modelled 6.1 37
PDB header:transferase
Chain: B: PDB Molecule:dual specificity mitogen-activated protein kinase kinase 5;
PDBTitle: crystal structure of the erk5 kinase domain in complex with an mkk52 binding fragment
37c6avhA_



not modelled 6.1 14
PDB header:ligase, plant protein
Chain: A: PDB Molecule:gh3.15 acyl acid amido synthetase;
PDBTitle: gh3.15 acyl acid amido synthetase
38c1nd9A_



not modelled 5.9 40
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor if-2;
PDBTitle: solution structure of the n-terminal subdomain of2 translation initiation factor if2
39d1nd9a_



not modelled 5.9 40
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:N-terminal subdomain of bacterial translation initiation factor IF2
40c3k4iC_



not modelled 5.8 15
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein pspto_3204 from2 pseudomonas syringae pv. tomato str. dc3000
41c4oo2D_



not modelled 5.7 64
PDB header:oxidoreductase
Chain: D: PDB Molecule:chlorophenol-4-monooxygenase;
PDBTitle: streptomyces globisporus c-1027 fad dependent (s)-3-chloro-β-2 tyrosine-s-sgcc2 c-5 hydroxylase sgcc apo form
42c1u8vA_



not modelled 5.6 36
PDB header:lyase, isomerase
Chain: A: PDB Molecule:gamma-aminobutyrate metabolism dehydratase/isomerase;
PDBTitle: crystal structure of 4-hydroxybutyryl-coa dehydratase from clostridium2 aminobutyricum: radical catalysis involving a [4fe-4s] cluster and3 flavin
43d1jh3a_



not modelled 5.4 44
Fold:Alpha-L RNA-binding motif
Superfamily:Alpha-L RNA-binding motif
Family:Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain
44c1qeyD_



not modelled 5.3 64
PDB header:gene regulation
Chain: D: PDB Molecule:protein (regulatory protein mnt);
PDBTitle: nmr structure determination of the tetramerization domain2 of the mnt repressor: an asymmetric a-helical assembly in3 slow exchange
45c1qeyB_



not modelled 5.3 64
PDB header:gene regulation
Chain: B: PDB Molecule:protein (regulatory protein mnt);
PDBTitle: nmr structure determination of the tetramerization domain2 of the mnt repressor: an asymmetric a-helical assembly in3 slow exchange
46c1qeyA_



not modelled 5.3 64
PDB header:gene regulation
Chain: A: PDB Molecule:protein (regulatory protein mnt);
PDBTitle: nmr structure determination of the tetramerization domain2 of the mnt repressor: an asymmetric a-helical assembly in3 slow exchange
47c1qeyC_



not modelled 5.3 64
PDB header:gene regulation
Chain: C: PDB Molecule:protein (regulatory protein mnt);
PDBTitle: nmr structure determination of the tetramerization domain2 of the mnt repressor: an asymmetric a-helical assembly in3 slow exchange
48d2b5id2



not modelled 5.3 36
Fold:Complement control module/SCR domain
Superfamily:Complement control module/SCR domain
Family:Complement control module/SCR domain
49c2dmeA_



not modelled 5.0 30
PDB header:metal binding protein
Chain: A: PDB Molecule:phd finger protein 3;
PDBTitle: solution structure of the tfiis domain ii of human phd2 finger protein 3

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