Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0128_(-)_155665_156444
DateTue Jul 23 14:50:17 BST 2019
Unique Job ID9f99bda4f4163968
SequenceVQREIYDGEA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:60.596 Y:68.385 Z:43.792
Model (left) based on template c3wdoA_
Top template information
PDB header:transport protein
Chain: A: PDB Molecule:mfs transporter;
PDBTitle: structure of e. coli yajr transporter
Confidence and coverage
Confidence: 81.7% Coverage: 75%
194 residues ( 75% of your sequence) have been modelled with 81.7% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3wdoA_



81.7 13
PDB header:transport protein
Chain: A: PDB Molecule:mfs transporter;
PDBTitle: structure of e. coli yajr transporter
2c5edlA_



75.9 15
PDB header:transport protein
Chain: A: PDB Molecule:putative hmp/thiamine permease protein ykoe;
PDBTitle: crystal structure of an s-component of ecf transporter
3c4w6vA_



73.0 15
PDB header:transport protein
Chain: A: PDB Molecule:di-/tripeptide transporter;
PDBTitle: crystal structure of a peptide transporter from yersinia2 enterocolitica at 3 a resolution
4c5aynA_



58.4 11
PDB header:transport protein
Chain: A: PDB Molecule:solute carrier family 39 (iron-regulated transporter);
PDBTitle: crystal structure of a bacterial homologue of iron transporter2 ferroportin in outward-facing state
5d1pv7a_



52.8 11
Fold:MFS general substrate transporter
Superfamily:MFS general substrate transporter
Family:LacY-like proton/sugar symporter
6c1pv7B_



52.8 11
PDB header:transport protein
Chain: B: PDB Molecule:lactose permease;
PDBTitle: crystal structure of lactose permease with tdg
7c5aymA_



51.4 11
PDB header:transport protein
Chain: A: PDB Molecule:solute carrier family 39 (iron-regulated transporter);
PDBTitle: crystal structure of a bacterial homologue of iron transporter2 ferroportin in outward-facing state with soaked iron
8c1ldaA_



51.1 17
PDB header:transport protein
Chain: A: PDB Molecule:glycerol uptake facilitator protein;
PDBTitle: crystal structure of the e. coli glycerol facilitator (glpf) without2 substrate glycerol
9d1fx8a_



51.1 17
Fold:Aquaporin-like
Superfamily:Aquaporin-like
Family:Aquaporin-like
10c4zp0A_



47.4 10
PDB header:transport protein
Chain: A: PDB Molecule:multidrug transporter mdfa;
PDBTitle: crystal structure of e. coli multidrug transporter mdfa in complex2 with deoxycholate
11c6h7dA_



44.0 12
PDB header:membrane protein
Chain: A: PDB Molecule:sugar transport protein 10;
PDBTitle: crystal structure of a. thaliana sugar transport protein 10 in complex2 with glucose in the outward occluded state
12d1bcce2



43.9 23
Fold:Single transmembrane helix
Superfamily:ISP transmembrane anchor
Family:ISP transmembrane anchor
13c6e9oA_



39.3 7
PDB header:membrane protein
Chain: A: PDB Molecule:d-galactonate transport;
PDBTitle: e. coli d-galactonate:proton symporter mutant e133q in the outward2 substrate-bound form
14c4xjnM_



39.2 19
PDB header:viral protein/rna
Chain: M: PDB Molecule:nucleocapsid;
PDBTitle: structure of the parainfluenza virus 5 nucleocapsid-rna complex: an2 insight into paramyxovirus polymerase activity
15c4ldsB_



35.3 13
PDB header:transport protein, membrane protein
Chain: B: PDB Molecule:bicyclomycin resistance protein tcab;
PDBTitle: the inward-facing structure of the glucose transporter from2 staphylococcus epidermidis
16c5tsaA_



32.7 14
PDB header:metal binding protein
Chain: A: PDB Molecule:membrane protein;
PDBTitle: crystal structure of the zrt-/irt-like protein from bordetella2 bronchiseptica with bound zn2+
17c3c02A_



29.6 12
PDB header:membrane protein
Chain: A: PDB Molecule:aquaglyceroporin;
PDBTitle: x-ray structure of the aquaglyceroporin from plasmodium falciparum
18c2f2bA_



29.4 11
PDB header:membrane protein
Chain: A: PDB Molecule:aquaporin aqpm;
PDBTitle: crystal structure of integral membrane protein aquaporin aqpm at 1.68a2 resolution
19c5v2sA_



27.4 17
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein b;
PDBTitle: crystal structure of glycoprotein b from herpes simplex virus type i
20c4uftB_



27.3 23
PDB header:rna binding protein
Chain: B: PDB Molecule:nucleoprotein;
PDBTitle: structure of the helical measles virus nucleocapsid
21c5c65A_



not modelled 26.9 14
PDB header:transport protein
Chain: A: PDB Molecule:solute carrier family 2, facilitated glucose transporter
PDBTitle: structure of the human glucose transporter glut3 / slc2a3
22c4co6A_



not modelled 26.1 24
PDB header:chaperone
Chain: A: PDB Molecule:nucleoprotein;
PDBTitle: crystal structure of the nipah virus rna free2 nucleoprotein-phosphoprotein complex
23c5e4vA_



not modelled 26.0 19
PDB header:viral protein
Chain: A: PDB Molecule:nucleoprotein,phosphoprotein;
PDBTitle: crystal structure of measles n0-p complex
24c4pypA_



not modelled 24.0 12
PDB header:transport protein
Chain: A: PDB Molecule:solute carrier family 2, facilitated glucose transporter
PDBTitle: crystal structure of the human glucose transporter glut1
25c2b5fD_



not modelled 23.6 11
PDB header:transport protein,membrane protein
Chain: D: PDB Molecule:aquaporin;
PDBTitle: crystal structure of the spinach aquaporin sopip2;1 in an2 open conformation to 3.9 resolution
26d1ppje2



not modelled 22.8 21
Fold:Single transmembrane helix
Superfamily:ISP transmembrane anchor
Family:ISP transmembrane anchor
27d1e12a_



not modelled 21.8 8
Fold:Family A G protein-coupled receptor-like
Superfamily:Family A G protein-coupled receptor-like
Family:Bacteriorhodopsin-like
28c2jagA_



not modelled 17.5 8
PDB header:membrane protein
Chain: A: PDB Molecule:halorhodopsin;
PDBTitle: l1-intermediate of halorhodopsin t203v
29c2gfpA_



not modelled 17.4 11
PDB header:membrane protein
Chain: A: PDB Molecule:multidrug resistance protein d;
PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli
30c3hfxA_



not modelled 17.1 17
PDB header:transport protein
Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter;
PDBTitle: crystal structure of carnitine transporter
31c6af0C_



not modelled 16.2 50
PDB header:transcription
Chain: C: PDB Molecule:cdc73 protein;
PDBTitle: structure of ctr9, paf1 and cdc73 ternary complex from myceliophthora2 thermophila
32c5i32A_



not modelled 15.7 12
PDB header:membrane protein
Chain: A: PDB Molecule:aquaporin tip2-1;
PDBTitle: ammonia permeable aquaporin attip2;1
33d1h6ia_



not modelled 14.9 11
Fold:Aquaporin-like
Superfamily:Aquaporin-like
Family:Aquaporin-like
34c5jnqA_



not modelled 13.1 9
PDB header:transferase/antibiotic
Chain: A: PDB Molecule:phospho-n-acetylmuramoyl-pentapeptide-transferase;
PDBTitle: mray tunicamycin complex
35c2yvxD_



not modelled 12.9 5
PDB header:transport protein
Chain: D: PDB Molecule:mg2+ transporter mgte;
PDBTitle: crystal structure of magnesium transporter mgte
36c1ciiA_



not modelled 11.6 15
PDB header:transmembrane protein
Chain: A: PDB Molecule:colicin ia;
PDBTitle: colicin ia
37d1fvia1



not modelled 11.5 29
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:DNA ligase/mRNA capping enzyme postcatalytic domain
38d1ycga1



not modelled 11.0 16
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
39d1ciia1



not modelled 11.0 15
Fold:Toxins' membrane translocation domains
Superfamily:Colicin
Family:Colicin
40c5d7tC_



not modelled 10.8 17
PDB header:transport protein
Chain: C: PDB Molecule:s-component for folate;
PDBTitle: folate ecf transporter: apo state
41c2qxvB_



not modelled 10.3 50
PDB header:gene regulation
Chain: B: PDB Molecule:enhancer of zeste homolog 2;
PDBTitle: structural basis of ezh2 recognition by eed
42c3gd8A_



not modelled 10.1 12
PDB header:membrane protein
Chain: A: PDB Molecule:aquaporin-4;
PDBTitle: crystal structure of human aquaporin 4 at 1.8 and its mechanism of2 conductance
43c6g2jY_



not modelled 9.7 12
PDB header:oxidoreductase
Chain: Y: PDB Molecule:mcg5603;
PDBTitle: mouse mitochondrial complex i in the active state
44c5ldwY_



not modelled 9.2 14
PDB header:oxidoreductase
Chain: Y: PDB Molecule:nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit
PDBTitle: structure of mammalian respiratory complex i, class1
45c4ainB_



not modelled 8.9 12
PDB header:membrane protein
Chain: B: PDB Molecule:glycine betaine transporter betp;
PDBTitle: crystal structure of betp with asymmetric protomers.
46c4ikyA_



not modelled 8.9 13
PDB header:transport protein
Chain: A: PDB Molecule:di-tripeptide abc transporter (permease);
PDBTitle: crystal structure of peptide transporter pot (e310q mutant) in complex2 with sulfate
47c6gtrD_



not modelled 8.8 41
PDB header:transcription
Chain: D: PDB Molecule:duf1778 domain-containing protein;
PDBTitle: structure of the atat y144f mutant toxin bound to the c-terminus of2 the antitoxin atar and acetyl-coa
48d1mowa1



not modelled 8.8 55
Fold:Homing endonuclease-like
Superfamily:Homing endonucleases
Family:Group I mobile intron endonuclease
49d1m6ya1



not modelled 8.6 21
Fold:SAM domain-like
Superfamily:Putative methyltransferase TM0872, insert domain
Family:Putative methyltransferase TM0872, insert domain
50c2x2oA_



not modelled 8.5 35
PDB header:flavoprotein
Chain: A: PDB Molecule:nrdi protein;
PDBTitle: the flavoprotein nrdi from bacillus cereus with the initially oxidized2 fmn cofactor in an intermediate radiation reduced state
51c5zghK_



not modelled 8.4 31
PDB header:photosynthesis
Chain: K: PDB Molecule:psak;
PDBTitle: cryo-em structure of the red algal psi-lhcr
52d1rh1a2



not modelled 8.2 16
Fold:Toxins' membrane translocation domains
Superfamily:Colicin
Family:Colicin
53d1af5a_



not modelled 8.1 40
Fold:Homing endonuclease-like
Superfamily:Homing endonucleases
Family:Group I mobile intron endonuclease
54d1t9ia_



not modelled 8.1 36
Fold:Homing endonuclease-like
Superfamily:Homing endonucleases
Family:Group I mobile intron endonuclease
55d1wg8a1



not modelled 8.0 36
Fold:SAM domain-like
Superfamily:Putative methyltransferase TM0872, insert domain
Family:Putative methyltransferase TM0872, insert domain
56d1m5xa_



not modelled 7.7 40
Fold:Homing endonuclease-like
Superfamily:Homing endonucleases
Family:Group I mobile intron endonuclease
57c2b6pA_



not modelled 7.5 13
PDB header:membrane protein
Chain: A: PDB Molecule:lens fiber major intrinsic protein;
PDBTitle: x-ray structure of lens aquaporin-0 (aqp0) (lens mip) in an open pore2 state
58c5kkpA_



not modelled 7.4 15
PDB header:isomerase
Chain: A: PDB Molecule:pseudouridylate synthase 7;
PDBTitle: crystal structure of human pseudouridylate synthase 7
59c4apsB_



not modelled 7.4 12
PDB header:transport protein
Chain: B: PDB Molecule:di-or tripeptide h+ symporter;
PDBTitle: crystal structure of a pot family peptide transporter in an inward2 open conformation.
60d2a5la1



not modelled 7.4 5
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:WrbA-like
61c5a72B_



not modelled 6.9 50
PDB header:hydrolase/dna
Chain: B: PDB Molecule:dna endonuclease i-cvui;
PDBTitle: crystal structure of the homing endonuclease i-cvui in complex2 with its target (sro1.3) in the presence of 2 mm ca
62d2arka1



not modelled 6.9 21
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:WrbA-like
63d1vmea1



not modelled 6.6 5
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
64c6irtA_



not modelled 6.5 17
PDB header:membrane protein
Chain: A: PDB Molecule:4f2 cell-surface antigen heavy chain;
PDBTitle: human lat1-4f2hc complex bound with bch
65d1bhpa_



not modelled 6.1 32
Fold:Crambin-like
Superfamily:Crambin-like
Family:Crambin-like
66c4ybqB_



not modelled 5.9 13
PDB header:transport protein/immune system
Chain: B: PDB Molecule:solute carrier family 2, facilitated glucose transporter
PDBTitle: rat glut5 with fv in the outward-open form
67c2i88A_



not modelled 5.9 16
PDB header:membrane protein
Chain: A: PDB Molecule:colicin-e1;
PDBTitle: crystal structure of the channel-forming domain of colicin e1
68c3fniA_



not modelled 5.8 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative diflavin flavoprotein a 3;
PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a
69c2jpjA_



not modelled 5.8 54
PDB header:antimicrobial protein
Chain: A: PDB Molecule:bacteriocin lactococcin-g subunit alpha;
PDBTitle: lactococcin g-a in dpc
70c2ghjD_



not modelled 5.5 26
PDB header:structural protein
Chain: D: PDB Molecule:50s ribosomal protein l20;
PDBTitle: crystal structure of folded and partially unfolded forms of aquifex2 aeolicus ribosomal protein l20
71c3tkaA_



not modelled 5.3 36
PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase h;
PDBTitle: crystal structure and solution saxs of methyltransferase rsmh from2 e.coli
72d2fug71



not modelled 5.3 38
Fold:N domain of copper amine oxidase-like
Superfamily:Frataxin/Nqo15-like
Family:Nqo15-like

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Transmembrane helix prediction 

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