Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0156_(pntAb)_184721_185053
DateTue Jul 23 14:50:20 BST 2019
Unique Job ID0350ffe66826f531
SequenceMYNELLENLA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:52.144 Y:33.603 Z:40.317
Model (left) based on template c4o9pC_
Top template information
PDB header:membrane protein
Chain: C: PDB Molecule:nad(p) transhydrogenase subunit alpha 2;
PDBTitle: crystal structure of thermus thermophilis transhydrogeanse domain ii2 dimer semet derivative
Confidence and coverage
Confidence:100.0% Coverage: 76%
84 residues ( 76% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4o9pC_



100.0 46
PDB header:membrane protein
Chain: C: PDB Molecule:nad(p) transhydrogenase subunit alpha 2;
PDBTitle: crystal structure of thermus thermophilis transhydrogeanse domain ii2 dimer semet derivative
2c3arct_



48.9 0
PDB header:electron transport, photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution
3c3a0bT_



44.8 0
PDB header:electron transport
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: crystal structure of br-substituted photosystem ii complex
4c5sv9B_



21.6 16
PDB header:transport protein
Chain: B: PDB Molecule:bor1p boron transporter;
PDBTitle: structure of the slc4 transporter bor1p in an inward-facing2 conformation
5d2auwa1



18.2 11
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:NE0471 C-terminal domain-like
6c2dw3A_



16.8 47
PDB header:photosynthesis
Chain: A: PDB Molecule:intrinsic membrane protein pufx;
PDBTitle: solution structure of the rhodobacter sphaeroides pufx2 membrane protein
7c2hp0A_



15.0 11
PDB header:isomerase
Chain: A: PDB Molecule:ids-epimerase;
PDBTitle: crystal structure of iminodisuccinate epimerase
8d1qnta2



12.8 38
Fold:Ribonuclease H-like motif
Superfamily:Methylated DNA-protein cysteine methyltransferase domain
Family:Methylated DNA-protein cysteine methyltransferase domain
9d1pbua_



12.2 33
Fold:Ferredoxin-like
Superfamily:eEF1-gamma domain
Family:eEF1-gamma domain
10c6eznH_



11.6 10
PDB header:membrane protein
Chain: H: PDB Molecule:dolichyl-diphosphooligosaccharide--protein
PDBTitle: cryo-em structure of the yeast oligosaccharyltransferase (ost) complex
11c2h3oA_



11.2 31
PDB header:membrane protein
Chain: A: PDB Molecule:merf;
PDBTitle: structure of merft, a membrane protein with two trans-2 membrane helices
12c6humQ_



10.8 29
PDB header:proton transport
Chain: Q: PDB Molecule:proton-translocating nadh-quinone dehydrogenase subunit q
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
13c2g2oA_



10.5 33
PDB header:transferase
Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase;
PDBTitle: structure of e.coli fabd complexed with sulfate
14c2kr6A_



9.0 27
PDB header:hydrolase
Chain: A: PDB Molecule:presenilin-1;
PDBTitle: solution structure of presenilin-1 ctf subunit
15c5nvkF_



8.5 17
PDB header:translation
Chain: F: PDB Molecule:grb10-interacting gyf protein 1;
PDBTitle: crystal structure of the human 4ehp-gigyf1 complex
16c5dz7A_



8.3 25
PDB header:transferase
Chain: A: PDB Molecule:polyketide biosynthesis protein pkse;
PDBTitle: structural basis of acyl transfer in a trans-at polyketide synthase
17d1rh1a2



8.1 18
Fold:Toxins' membrane translocation domains
Superfamily:Colicin
Family:Colicin
18c2auwB_



7.7 11
PDB header:unknown function
Chain: B: PDB Molecule:hypothetical protein ne0471;
PDBTitle: crystal structure of putative dna binding protein ne0471 from2 nitrosomonas europaea atcc 19718
19c5o5oD_



7.5 28
PDB header:chaperone
Chain: D: PDB Molecule:rnase adapter protein rapz;
PDBTitle: x-ray crystal structure of rapz from escherichia coli (p32 space2 group)
20c5dz6A_



7.3 25
PDB header:transferase
Chain: A: PDB Molecule:polyketide biosynthesis malonyl coa-acyl carrier protein
PDBTitle: acyl transferase from bacillaene pks
21c2c2nA_



not modelled 7.1 42
PDB header:transferase
Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase;
PDBTitle: structure of human mitochondrial malonyltransferase
22c3vrbG_



not modelled 6.9 30
PDB header:oxidoreductase/oxidoreductase inhibitor
Chain: G: PDB Molecule:cytochrome b-large subunit;
PDBTitle: mitochondrial rhodoquinol-fumarate reductase from the parasitic2 nematode ascaris suum with the specific inhibitor flutolanil and3 substrate fumarate
23d2i53a2



not modelled 6.8 18
Fold:Cyclin-like
Superfamily:Cyclin-like
Family:Cyclin
24c3ezoA_



not modelled 6.8 25
PDB header:transferase
Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase;
PDBTitle: crystal structure of acyl-carrier-protein s-malonyltransferase from2 burkholderia pseudomallei 1710b
25c2cdh9_



not modelled 6.6 42
PDB header:transferase
Chain: 9: PDB Molecule:acetyl transferase;
PDBTitle: architecture of the thermomyces lanuginosus fungal fatty2 acid synthase at 5 angstrom resolution.
26c3rgiA_



not modelled 6.4 25
PDB header:transferase
Chain: A: PDB Molecule:disd protein;
PDBTitle: trans-acting transferase from disorazole synthase
27c2jwaA_



not modelled 6.2 38
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: erbb2 transmembrane segment dimer spatial structure
28c2ks1A_



not modelled 6.2 38
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
29c1wazA_



not modelled 6.1 31
PDB header:transport protein
Chain: A: PDB Molecule:merf;
PDBTitle: nmr structure determination of the bacterial mercury transporter,2 merf, in micelles
30c2k1aA_



not modelled 6.1 50
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment
31c5y79A_



not modelled 6.0 20
PDB header:transport protein
Chain: A: PDB Molecule:putative hexose phosphate translocator;
PDBTitle: crystal structure of the triose-phosphate/phosphate translocator in2 complex with 3-phosphoglycerate
32c5yq7C_



not modelled 5.9 17
PDB header:photosynthesis
Chain: C: PDB Molecule:cytochrome subunit of photosynthetic reaction center;
PDBTitle: cryo-em structure of the rc-lh core complex from roseiflexus2 castenholzii
33c3im8A_



not modelled 5.8 42
PDB header:transferase
Chain: A: PDB Molecule:malonyl acyl carrier protein transacylase;
PDBTitle: crystal structure of mcat from streptococcus pneumoniae
34c4rl1A_



not modelled 5.8 45
PDB header:transferase
Chain: A: PDB Molecule:type i polyketide synthase aves 1;
PDBTitle: structural and functional analysis of a loading acyltransferase from2 the avermectin modular polyketide synthase
35c5ukvA_



not modelled 5.7 23
PDB header:transferase
Chain: A: PDB Molecule:atp-binding protein;
PDBTitle: dhp domain of phor of m. tuberculosis - semet
36c5m45I_



not modelled 5.6 25
PDB header:ligase
Chain: I: PDB Molecule:acetone carboxylase gamma subunit;
PDBTitle: structure of acetone carboxylase purified from xanthobacter2 autotrophicus
37c3im9A_



not modelled 5.5 36
PDB header:transferase
Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase;
PDBTitle: crystal structure of mcat from staphylococcus aureus
38d1joya_



not modelled 5.3 25
Fold:ROP-like
Superfamily:Homodimeric domain of signal transducing histidine kinase
Family:Homodimeric domain of signal transducing histidine kinase
39c2jxfA_



not modelled 5.2 50
PDB header:viral protein, membrane protein
Chain: A: PDB Molecule:genome polyprotein;
PDBTitle: the solution structure of hcv ns4b(40-69)
40c5mx2T_



not modelled 5.2 0
PDB header:oxidoreductase
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: photosystem ii depleted of the mn4cao5 cluster at 2.55 a resolution

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below