Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0157A_(RVBD0157A)_186493_186621
DateTue Jul 23 14:50:20 BST 2019
Unique Job ID9bb5154169ee6fca
SequenceVMDPSPDYDV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:28.380 Y:29.923 Z:24.337
Model (left) based on template c3j6rC_
Top template information
PDB header:virus
Chain: C: PDB Molecule:major capsid protein l1;
PDBTitle: electron cryo-microscopy of human papillomavirus type 16 capsid
Confidence and coverage
Confidence: 13.6% Coverage: 36%
15 residues ( 36% of your sequence) have been modelled with 13.6% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3j6rC_



13.6 53
PDB header:virus
Chain: C: PDB Molecule:major capsid protein l1;
PDBTitle: electron cryo-microscopy of human papillomavirus type 16 capsid
2c3iyjE_



12.8 40
PDB header:virus
Chain: E: PDB Molecule:major capsid protein l1;
PDBTitle: bovine papillomavirus type 1 outer capsid
3d1dzla_



12.1 53
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Group I dsDNA viruses
Family:Papovaviridae-like VP
4c1dzlA_



12.1 53
PDB header:virus
Chain: A: PDB Molecule:late major capsid protein l1;
PDBTitle: l1 protein of human papillomavirus 16
5c2r5iL_



11.7 53
PDB header:viral protein
Chain: L: PDB Molecule:l1 protein;
PDBTitle: pentamer structure of major capsid protein l1 of human papilloma virus2 type 18
6c2r5kE_



10.5 47
PDB header:viral protein
Chain: E: PDB Molecule:major capsid protein l1;
PDBTitle: pentamer structure of major capsid protein l1 of human papilloma virus2 type 11
7c6igdG_



10.4 47
PDB header:structural protein
Chain: G: PDB Molecule:major capsid protein l1;
PDBTitle: crystal structure of hpv58/33 chimeric l1 pentamer
8d1w0ba_



9.2 28
Fold:Spectrin repeat-like
Superfamily:Alpha-hemoglobin stabilizing protein AHSP
Family:Alpha-hemoglobin stabilizing protein AHSP
9c5vgbB_



8.8 47
PDB header:hydrolase/hydrolase inhibitor
Chain: B: PDB Molecule:anti-crispr protein (acriic1);
PDBTitle: crystal structure of nmecas9 hnh domain bound to anti-crispr acriic1
10d1z8ua1



8.6 28
Fold:Spectrin repeat-like
Superfamily:Alpha-hemoglobin stabilizing protein AHSP
Family:Alpha-hemoglobin stabilizing protein AHSP
11c4v00B_



8.4 44
PDB header:antimicrobial protein
Chain: B: PDB Molecule:monotreme lactating protein;
PDBTitle: structural and functional characterization of a novel monotreme-2 specific protein from the milk of the platypus
12d1t4wa_



7.0 33
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:p53-like transcription factors
Family:p53 DNA-binding domain-like
13c5m45I_



6.8 44
PDB header:ligase
Chain: I: PDB Molecule:acetone carboxylase gamma subunit;
PDBTitle: structure of acetone carboxylase purified from xanthobacter2 autotrophicus
14c5l9wC_



6.1 44
PDB header:ligase
Chain: C: PDB Molecule:acetophenone carboxylase beta subunit;
PDBTitle: crystal structure of the apc core complex
15c3sqiA_



6.0 36
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:klla0e03807p;
PDBTitle: dna binding domain of ndc10
16c3t79A_



6.0 36
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:klla0e03807p;
PDBTitle: ndc10: a platform for inner kinetochore assembly in budding yeast
17d2d6fc3



5.4 21
Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:GatB/GatE catalytic domain-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite