Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0167_(yrbE1A)_196859_197656
DateTue Jul 23 14:50:21 BST 2019
Unique Job IDd8794692919d0cc1
SequenceVTTSTTLGGY ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:44.899 Y:47.069 Z:70.378
Model (left) based on template c6ic4H_
Top template information
PDB header:protein transport
Chain: H: PDB Molecule:abc transporter permease;
PDBTitle: cryo-em structure of the a. baumannii mla complex at 8.7 a resolution
Confidence and coverage
Confidence:100.0% Coverage: 94%
249 residues ( 94% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6ic4H_



100.0 21
PDB header:protein transport
Chain: H: PDB Molecule:abc transporter permease;
PDBTitle: cryo-em structure of the a. baumannii mla complex at 8.7 a resolution
2c5x5yG_



80.6 15
PDB header:membrane protein
Chain: G: PDB Molecule:uncharacterized protein;
PDBTitle: a membrane protein complex
3c6mjpG_



51.6 13
PDB header:lipid transport
Chain: G: PDB Molecule:lps export abc transporter permease lptg;
PDBTitle: lptb(e163q)fgc from vibrio cholerae
4c5l75F_



50.5 15
PDB header:transport protein
Chain: F: PDB Molecule:fig000988: predicted permease;
PDBTitle: a protein structure
5c5l75G_



42.7 20
PDB header:transport protein
Chain: G: PDB Molecule:fig000906: predicted permease;
PDBTitle: a protein structure
6c5x5yF_



26.7 16
PDB header:membrane protein
Chain: F: PDB Molecule:uncharacterized protein;
PDBTitle: a membrane protein complex
7c6qvcB_



20.0 12
PDB header:membrane protein
Chain: B: PDB Molecule:chloride channel protein 1;
PDBTitle: cryoem structure of the human clc-1 chloride channel, cbs state 1
8c6mjpF_



17.6 15
PDB header:lipid transport
Chain: F: PDB Molecule:fig000988: predicted permease;
PDBTitle: lptb(e163q)fgc from vibrio cholerae
9c5ghaF_



14.9 40
PDB header:transferase/transport protein
Chain: F: PDB Molecule:sulfur carrier ttub;
PDBTitle: sulfur transferase ttua in complex with sulfur carrier ttub
10d2hafa1



14.2 50
Fold:VC0467-like
Superfamily:VC0467-like
Family:VC0467-like
11c2mfrA_



11.3 24
PDB header:transferase
Chain: A: PDB Molecule:insulin receptor;
PDBTitle: solution structure of the transmembrane domain of the insulin receptor2 in micelles
12d3dhwa1



11.1 15
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
13c2hg5D_



10.9 10
PDB header:membrane protein
Chain: D: PDB Molecule:kcsa channel;
PDBTitle: cs+ complex of a k channel with an amide to ester substitution in the2 selectivity filter
14d1z96a1



10.6 24
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
15c2m67A_



10.6 6
PDB header:transport protein
Chain: A: PDB Molecule:merf;
PDBTitle: full-length mercury transporter protein merf in lipid bilayer2 membranes
16c3vvpA_



10.5 16
PDB header:transport protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of mate in complex with br-nrf
17c4migC_



10.5 33
PDB header:oxidoreductase
Chain: C: PDB Molecule:pyranose 2-oxidase;
PDBTitle: pyranose 2-oxidase from phanerochaete chrysosporium, recombinant wild2 type
18c2hv8D_



10.3 18
PDB header:protein transport
Chain: D: PDB Molecule:rab11 family-interacting protein 3;
PDBTitle: crystal structure of gtp-bound rab11 in complex with fip3
19c6coyB_



9.6 13
PDB header:transport protein
Chain: B: PDB Molecule:chloride channel protein 1;
PDBTitle: human clc-1 chloride ion channel, transmembrane domain
20c5xu1M_



9.2 14
PDB header:transport protein
Chain: M: PDB Molecule:abc transporter permeae;
PDBTitle: structure of a non-canonical abc transporter from streptococcus2 pneumoniae r6
21d1g7oa1



not modelled 9.0 16
Fold:GST C-terminal domain-like
Superfamily:GST C-terminal domain-like
Family:Glutathione S-transferase (GST), C-terminal domain
22c1abzA_



not modelled 8.5 31
PDB header:de novo design
Chain: A: PDB Molecule:alpha-t-alpha;
PDBTitle: alpha-t-alpha, a de novo designed peptide, nmr, 232 structures
23c2aj2A_



not modelled 8.5 50
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical upf0301 protein vc0467;
PDBTitle: x-ray crystal structure of protein vc0467 from vibrio2 cholerae. northeast structural genomics consortium target3 vcr8.
24c1cf3A_



not modelled 8.3 25
PDB header:oxidoreductase(flavoprotein)
Chain: A: PDB Molecule:protein (glucose oxidase);
PDBTitle: glucose oxidase from apergillus niger
25d2k0bx1



not modelled 7.3 20
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
26c3dfmA_



not modelled 7.1 23
PDB header:hydrolase
Chain: A: PDB Molecule:teicoplanin pseudoaglycone deacetylase orf2;
PDBTitle: the crystal structure of the zinc inhibited form of2 teicoplanin deacetylase orf2
27d1q74a_



not modelled 6.8 32
Fold:LmbE-like
Superfamily:LmbE-like
Family:LmbE-like
28c5mg3D_



not modelled 6.8 7
PDB header:chaperone
Chain: D: PDB Molecule:protein translocase subunit secd;
PDBTitle: em fitted model of bacterial holo-translocon
29d2hjqa1



not modelled 6.8 20
Fold:LEM/SAP HeH motif
Superfamily:Rho N-terminal domain-like
Family:YqbF C-terminal domain-like
30d2onkc1



not modelled 6.3 11
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
31c2onkC_



not modelled 6.3 11
PDB header:membrane protein
Chain: C: PDB Molecule:molybdate/tungstate abc transporter, permease
PDBTitle: abc transporter modbc in complex with its binding protein2 moda
32c5l1xH_



not modelled 6.2 42
PDB header:viral protein
Chain: H: PDB Molecule:hmpv f1 subunit;
PDBTitle: structure of the human metapneumovirus fusion protein in the2 postfusion conformation
33d2ebfx2



not modelled 6.2 24
Fold:EreA/ChaN-like
Superfamily:EreA/ChaN-like
Family:PMT domain-like
34d1i94m_



not modelled 6.0 75
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Ribosomal protein S13
35c5ws4A_



not modelled 6.0 15
PDB header:membrane protein
Chain: A: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: crystal structure of tripartite-type abc transporter macb from2 acinetobacter baumannii
36c2jy8A_



not modelled 5.8 20
PDB header:protein binding
Chain: A: PDB Molecule:ubiquitin-binding protein p62;
PDBTitle: nmr structure of the ubiquitin associated (uba) domain of2 p62 (sqstm1) in complex with ubiquitin. rdc refined
37c4dagA_



not modelled 5.7 42
PDB header:viral protein/immune system
Chain: A: PDB Molecule:fusion glycoprotein f0;
PDBTitle: structure of the human metapneumovirus fusion protein with2 neutralizing antibody identifies a pneumovirus antigenic site
38d1rhzb_



not modelled 5.6 12
Fold:Single transmembrane helix
Superfamily:Preprotein translocase SecE subunit
Family:Preprotein translocase SecE subunit
39c2m7xA_



not modelled 5.6 29
PDB header:membrane protein
Chain: A: PDB Molecule:na(+)/h(+) antiporter;
PDBTitle: structural and functional analysis of transmembrane segment iv of the2 salt tolerance protein sod2
40c5wb0F_



not modelled 5.4 42
PDB header:viral protein
Chain: F: PDB Molecule:fusion glycoprotein f0;
PDBTitle: crystal structure of human metapneumovirus fusion glycoprotein2 stabilized in the prefusion state
41c1zavV_



not modelled 5.1 41
PDB header:structural protein
Chain: V: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p21
42d1zavu1



not modelled 5.1 41
Fold:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
Superfamily:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
Family:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
43c1zavW_



not modelled 5.1 41
PDB header:structural protein
Chain: W: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p21
44c1zaxU_



not modelled 5.1 41
PDB header:structural protein
Chain: U: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form b
45c1zaxV_



not modelled 5.1 41
PDB header:structural protein
Chain: V: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form b
46c1zaxW_



not modelled 5.1 41
PDB header:structural protein
Chain: W: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form b
47c1zavU_



not modelled 5.1 41
PDB header:structural protein
Chain: U: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p21
48c1zaxY_



not modelled 5.1 41
PDB header:structural protein
Chain: Y: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form b
49c1zavX_



not modelled 5.1 41
PDB header:structural protein
Chain: X: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p21
50c1zavY_



not modelled 5.1 41
PDB header:structural protein
Chain: Y: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p21

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below