Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0169_(mce1A)_198532_199896
DateTue Jul 23 14:50:22 BST 2019
Unique Job ID7580e1d11f66fbdd
SequenceMTTPGKLNKA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:44.498 Y:42.280 Z:63.823
Model (left) based on template c6ic4C_
Top template information
PDB header:protein transport
Chain: C: PDB Molecule:toluene tolerance efflux transporter (abc superfamily,
PDBTitle: cryo-em structure of the a. baumannii mla complex at 8.7 a resolution
Confidence and coverage
Confidence: 99.9% Coverage: 29%
133 residues ( 29% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6ic4C_



99.9 21
PDB header:protein transport
Chain: C: PDB Molecule:toluene tolerance efflux transporter (abc superfamily,
PDBTitle: cryo-em structure of the a. baumannii mla complex at 8.7 a resolution
2c5uw8C_



99.7 21
PDB header:transport protein
Chain: C: PDB Molecule:probable phospholipid abc transporter-binding protein mlad;
PDBTitle: structure of e. coli mce protein mlad, core mce domain
3c5uvnD_



99.5 19
PDB header:transport protein
Chain: D: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
4c5uvnC_



99.5 19
PDB header:transport protein
Chain: C: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
5c5uvnF_



99.5 19
PDB header:transport protein
Chain: F: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
6c5uvnE_



99.5 19
PDB header:transport protein
Chain: E: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
7c5uvnA_



99.5 19
PDB header:transport protein
Chain: A: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
8c5uvnB_



99.5 19
PDB header:transport protein
Chain: B: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
9c3g67A_



82.0 9
PDB header:signaling protein
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein;
PDBTitle: crystal structure of a soluble chemoreceptor from thermotoga2 maritima
10c1qu7A_



81.8 13
PDB header:signaling protein
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein i;
PDBTitle: four helical-bundle structure of the cytoplasmic domain of a serine2 chemotaxis receptor
11c2j5uB_



68.3 14
PDB header:cell shape regulation
Chain: B: PDB Molecule:mrec protein;
PDBTitle: mrec lysteria monocytogenes
12c5jxpA_



62.6 11
PDB header:hydrolase
Chain: A: PDB Molecule:asp/glu-specific dipeptidyl-peptidase;
PDBTitle: crystal structure of porphyromonas endodontalis dpp11 in alternate2 conformation
13d1szia_



62.5 16
Fold:Four-helical up-and-down bundle
Superfamily:Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain
Family:Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain
14c2qf4A_



58.3 17
PDB header:structural protein
Chain: A: PDB Molecule:cell shape determining protein mrec;
PDBTitle: high resolution structure of the major periplasmic domain from the2 cell shape-determining filament mrec (orthorhombic form)
15c4abxB_



55.9 13
PDB header:dna binding protein
Chain: B: PDB Molecule:dna repair protein recn;
PDBTitle: crystal structure of deinococcus radiodurans recn coiled-2 coil domain
16c3lnrA_



52.4 10
PDB header:signaling protein
Chain: A: PDB Molecule:aerotaxis transducer aer2;
PDBTitle: crystal structure of poly-hamp domains from the p. aeruginosa soluble2 receptor aer2
17c5xbjA_



50.7 13
PDB header:biosynthetic protein
Chain: A: PDB Molecule:flagellar hook-associated protein flgk;
PDBTitle: the structure of the flagellar hook junction protein hap1 (flgk) from2 campylobacter jejuni
18c6e6aB_



50.1 15
PDB header:protein binding
Chain: B: PDB Molecule:inclusion membrane protein a;
PDBTitle: triclinic crystal form of inca g144a point mutant
19c3q5xA_



49.7 12
PDB header:cell cycle
Chain: A: PDB Molecule:protein cut8;
PDBTitle: structure of proteasome tether
20c3cwgA_



48.0 12
PDB header:transcription
Chain: A: PDB Molecule:signal transducer and activator of transcription
PDBTitle: unphosphorylated mouse stat3 core fragment
21c5lp5F_



not modelled 47.4 17
PDB header:hydrolase/antibiotic
Chain: F: PDB Molecule:rod shape-determining protein (mrec);
PDBTitle: complex between penicillin-binding protein (pbp2) and mrec from2 helicobacter pylori
22c2ch7A_



not modelled 46.1 5
PDB header:chemotaxis
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein;
PDBTitle: crystal structure of the cytoplasmic domain of a bacterial2 chemoreceptor from thermotoga maritima
23c6cs2A_



not modelled 42.8 22
PDB header:viral protein/hydrolase
Chain: A: PDB Molecule:spike glycoprotein,fibritin;
PDBTitle: sars spike glycoprotein - human ace2 complex, stabilized variant, all2 ace2-bound particles
24c4y01B_



not modelled 40.9 14
PDB header:hydrolase
Chain: B: PDB Molecule:peptidase s46;
PDBTitle: crystal structure of dipeptidyl peptidase 11 (dpp11) from2 porphyromonas gingivalis
25c4iogD_



not modelled 38.0 15
PDB header:unknown function
Chain: D: PDB Molecule:secreted protein esxb;
PDBTitle: the crystal structure of a secreted protein esxb (wild-type, in p212 space group) from bacillus anthracis str. sterne
26c1kmiZ_



not modelled 35.9 14
PDB header:signaling protein
Chain: Z: PDB Molecule:chemotaxis protein chez;
PDBTitle: crystal structure of an e.coli chemotaxis protein, chez
27c3zx6A_



not modelled 34.1 15
PDB header:signaling
Chain: A: PDB Molecule:hamp, methyl-accepting chemotaxis protein i;
PDBTitle: structure of hamp(af1503)-tsr fusion - hamp (a291v) mutant
28c1deqF_



not modelled 34.0 8
PDB header:blood clotting
Chain: F: PDB Molecule:fibrinogen (gamma chain);
PDBTitle: the crystal structure of modified bovine fibrinogen (at ~42 angstrom resolution)
29c3bt6B_



not modelled 33.3 9
PDB header:viral protein
Chain: B: PDB Molecule:influenza b hemagglutinin (ha);
PDBTitle: crystal structure of influenza b virus hemagglutinin
30c3ur1C_



not modelled 33.1 22
PDB header:immune system
Chain: C: PDB Molecule:methyl-accepting chemotaxis protein;
PDBTitle: the structure of a ternary complex between chea domains p4 and p5 with2 chew and with a truncated fragment of tm14, a chemoreceptor analog3 from thermotoga maritima.
31c3gvmA_



not modelled 33.0 14
PDB header:viral protein
Chain: A: PDB Molecule:putative uncharacterized protein sag1039;
PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae
32d1st6a4



not modelled 32.8 15
Fold:Four-helical up-and-down bundle
Superfamily:alpha-catenin/vinculin-like
Family:alpha-catenin/vinculin
33c4rh7A_



not modelled 32.0 9
PDB header:motor protein
Chain: A: PDB Molecule:green fluorescent protein/cytoplasmic dynein 2 heavy chain
PDBTitle: crystal structure of human cytoplasmic dynein 2 motor domain in2 complex with adp.vi
34c4wsrA_



not modelled 31.9 11
PDB header:viral protein
Chain: A: PDB Molecule:hemagglutinin;
PDBTitle: the crystal structure of hemagglutinin form a/chicken/new york/14677-2 13/1998
35c5n77A_



not modelled 31.9 12
PDB header:transport protein
Chain: A: PDB Molecule:magnesium transport protein cora;
PDBTitle: crystal structure of the cytosolic domain of the cora magnesium2 channel from escherichia coli in complex with magnesium
36c2wpqA_



not modelled 31.8 7
PDB header:membrane protein
Chain: A: PDB Molecule:trimeric autotransporter adhesin fragment;
PDBTitle: salmonella enterica sada 479-519 fused to gcn4 adaptors (sadak3, in-2 register fusion)
37c4hw9E_



not modelled 30.8 18
PDB header:membrane protein
Chain: E: PDB Molecule:mechanosensitive channel mscs;
PDBTitle: crystal structure of helicobacter pylori mscs (closed state)
38c4lwsA_



not modelled 30.6 14
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
39c2vs0B_



not modelled 30.6 13
PDB header:cell invasion
Chain: B: PDB Molecule:virulence factor esxa;
PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa
40c4fiuC_



not modelled 30.3 12
PDB header:viral protein
Chain: C: PDB Molecule:hemagglutinin;
PDBTitle: the structure of hemagglutinin of h16 subtype influenza virus with2 v327g mutation
41c4tkoB_



not modelled 30.3 14
PDB header:membrane protein
Chain: B: PDB Molecule:emra;
PDBTitle: structure of the periplasmic adaptor protein emra
42c6j9rA_



not modelled 29.8 9
PDB header:translation
Chain: A: PDB Molecule:brain tumor protein;
PDBTitle: coiled-coil domain of drosophila trim protein brat
43c6ezvX_



not modelled 29.1 13
PDB header:toxin
Chain: X: PDB Molecule:non-hemolytic enterotoxin lytic component l1;
PDBTitle: the cytotoxin maka from vibrio cholerae
44c5u0pU_



not modelled 28.9 7
PDB header:transcription
Chain: U: PDB Molecule:mediator complex subunit 21;
PDBTitle: cryo-em structure of the transcriptional mediator
45c2wr2B_



not modelled 28.1 11
PDB header:viral protein
Chain: B: PDB Molecule:hemagglutinin;
PDBTitle: structure of influenza h2 avian hemagglutinin with avian2 receptor
46c1ha0A_



not modelled 28.0 11
PDB header:viral protein
Chain: A: PDB Molecule:protein (hemagglutinin precursor);
PDBTitle: hemagglutinin precursor ha0
47c3j6vL_



not modelled 27.9 15
PDB header:ribosome
Chain: L: PDB Molecule:28s ribosomal protein s12, mitochondrial;
PDBTitle: cryo-em structure of the small subunit of the mammalian mitochondrial2 ribosome
48c1zn1L_



not modelled 27.8 24
PDB header:biosynthetic/structural protein/rna
Chain: L: PDB Molecule:30s ribosomal protein s12;
PDBTitle: coordinates of rrf fitted into cryo-em map of the 70s post-termination2 complex
49c3t9nG_



not modelled 27.6 18
PDB header:membrane protein
Chain: G: PDB Molecule:small-conductance mechanosensitive channel;
PDBTitle: crystal structure of a membrane protein
50d2uubl1



not modelled 26.9 27
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
51c3ck6E_



not modelled 24.1 9
PDB header:structural protein
Chain: E: PDB Molecule:putative membrane transport protein;
PDBTitle: crystal structure of zntb cytoplasmic domain from vibrio2 parahaemolyticus rimd 2210633
52c1mqlB_



not modelled 23.7 12
PDB header:viral protein
Chain: B: PDB Molecule:hemagglutinin ha2 chain;
PDBTitle: bha of ukr/63
53c4n21E_



not modelled 23.6 11
PDB header:viral protein
Chain: E: PDB Molecule:gp2 ectodomain;
PDBTitle: crystal structure of the gp2 core domain from the california academy2 of science virus
54c6cv0C_



not modelled 22.8 5
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: cryo-electron microscopy structure of infectious bronchitis2 coronavirus spike protein
55c5zhyA_



not modelled 22.5 11
PDB header:viral protein
Chain: A: PDB Molecule:spike glycoprotein, spike glycoprotein;
PDBTitle: structural characterization of the hcov-229e fusion core
56c6b7nC_



not modelled 22.4 13
PDB header:viral protein
Chain: C: PDB Molecule:spike protein;
PDBTitle: cryo-electron microscopy structure of porcine delta coronavirus spike2 protein in the pre-fusion state
57c1bf5A_



not modelled 21.6 10
PDB header:gene regulation/dna
Chain: A: PDB Molecule:signal transducer and activator of transcription 1-
PDBTitle: tyrosine phosphorylated stat-1/dna complex
58c5xnmj_



not modelled 21.6 18
PDB header:membrane protein
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: structure of unstacked c2s2m2-type psii-lhcii supercomplex from pisum2 sativum
59c6gajA_



not modelled 21.4 7
PDB header:viral protein
Chain: A: PDB Molecule:outer capsid protein sigma-1;
PDBTitle: crystal structure of the t1l reovirus sigma1 coiled coil tail (iodide)
60c2wrhI_



not modelled 20.9 9
PDB header:viral protein
Chain: I: PDB Molecule:hemagglutinin ha2 chain;
PDBTitle: structure of h1 duck albert hemagglutinin with human2 receptor
61d2qall1



not modelled 20.0 24
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
62c4mc5C_



not modelled 19.9 10
PDB header:viral protein
Chain: C: PDB Molecule:hemagglutinin;
PDBTitle: crystal structure of a subtype h18 hemagglutinin homologue from2 a/flat-faced bat/peru/033/2010 (h18n11)
63c1hgeD_



not modelled 19.6 11
PDB header:viral protein
Chain: D: PDB Molecule:hemagglutinin, (g135r), ha1 chain;
PDBTitle: binding of influenza virus hemagglutinin to analogs of its cell-2 surface receptor, sialic acid: analysis by proton nuclear magnetic3 resonance spectroscopy and x-ray crystallography
64c3a0hJ_



not modelled 19.6 21
PDB header:electron transport
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: crystal structure of i-substituted photosystem ii complex
65d2axtj1



not modelled 19.6 21
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein J, PsbJ
Family:PsbJ-like
66c4h32L_



not modelled 19.5 12
PDB header:viral protein
Chain: L: PDB Molecule:hemagglutinin;
PDBTitle: the crystal structure of the hemagglutinin h17 derived the bat2 influenza a virus
67c2qihA_



not modelled 19.3 10
PDB header:cell adhesion
Chain: A: PDB Molecule:protein uspa1;
PDBTitle: crystal structure of 527-665 fragment of uspa1 protein from moraxella2 catarrhalis
68c2j0oA_



not modelled 18.9 10
PDB header:cell invasion
Chain: A: PDB Molecule:invasin ipad;
PDBTitle: shigella flexneri ipad
69d2j0oa1



not modelled 18.9 10
Fold:IpaD-like
Superfamily:IpaD-like
Family:IpaD-like
70d1i94l_



not modelled 18.9 27
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
71c3jcuj_



not modelled 18.7 24
PDB header:membrane protein
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
72c3vkhA_



not modelled 18.4 12
PDB header:motor protein
Chain: A: PDB Molecule:dynein heavy chain, cytoplasmic;
PDBTitle: x-ray structure of a functional full-length dynein motor domain
73c2d4yA_



not modelled 18.0 12
PDB header:structural protein
Chain: A: PDB Molecule:flagellar hook-associated protein 1;
PDBTitle: crystal structure of a 49k fragment of hap1 (flgk)
74c1ru7B_



not modelled 18.0 9
PDB header:viral protein
Chain: B: PDB Molecule:hemagglutinin;
PDBTitle: 1934 human h1 hemagglutinin
75c4ut1A_



not modelled 17.8 17
PDB header:motor protein
Chain: A: PDB Molecule:flagellar hook-associated protein;
PDBTitle: the structure of the flagellar hook junction protein flgk2 from burkholderia pseudomallei
76c6el1F_



not modelled 17.4 8
PDB header:membrane protein
Chain: F: PDB Molecule:yaxa;
PDBTitle: yaxab pore complex
77c3nwiC_



not modelled 17.3 9
PDB header:transport protein
Chain: C: PDB Molecule:zinc transport protein zntb;
PDBTitle: the soluble domain structure of the zntb zn2+ efflux system
78c4h8sA_



not modelled 17.1 7
PDB header:signaling protein
Chain: A: PDB Molecule:dcc-interacting protein 13-beta;
PDBTitle: crystal structure of human appl2barph domain
79c6nzkB_



not modelled 16.7 17
PDB header:viral protein
Chain: B: PDB Molecule:spike surface glycoprotein;
PDBTitle: structural basis for human coronavirus attachment to sialic acid2 receptors
80d1eq1a_



not modelled 16.5 10
Fold:Apolipophorin-III
Superfamily:Apolipophorin-III
Family:Apolipophorin-III
81c5zuvB_



not modelled 16.4 17
PDB header:viral protein, inhibitor
Chain: B: PDB Molecule:spike glycoprotein,spike glycoprotein,inhibitor ek1;
PDBTitle: crystal structure of the human coronavirus 229e hr1 motif in complex2 with pan-covs inhibitor ek1
82c3m5gD_



not modelled 16.3 8
PDB header:viral protein
Chain: D: PDB Molecule:hemagglutinin;
PDBTitle: crystal structure of a h7 influenza virus hemagglutinin
83c2vv5D_



not modelled 16.0 21
PDB header:membrane protein
Chain: D: PDB Molecule:small-conductance mechanosensitive channel;
PDBTitle: the open structure of mscs
84c3euhB_



not modelled 15.5 9
PDB header:cell cycle
Chain: B: PDB Molecule:chromosome partition protein mukf;
PDBTitle: crystal structure of the muke-mukf complex
85d1hcia4



not modelled 15.2 2
Fold:Spectrin repeat-like
Superfamily:Spectrin repeat
Family:Spectrin repeat
86c3zbhC_



not modelled 15.1 17
PDB header:unknown function
Chain: C: PDB Molecule:esxa;
PDBTitle: geobacillus thermodenitrificans esxa crystal form i
87d1gd7a_



not modelled 15.0 16
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Myf domain
88d1st6a3



not modelled 14.4 15
Fold:Four-helical up-and-down bundle
Superfamily:alpha-catenin/vinculin-like
Family:alpha-catenin/vinculin
89d1t98a2



not modelled 14.2 12
Fold:STAT-like
Superfamily:MukF C-terminal domain-like
Family:MukF C-terminal domain-like
90c1p68A_



not modelled 13.7 26
PDB header:de novo protein
Chain: A: PDB Molecule:de novo designed protein s-824;
PDBTitle: solution structure of s-824, a de novo designed four helix2 bundle
91c2kbbA_



not modelled 13.2 13
PDB header:structural protein
Chain: A: PDB Molecule:talin-1;
PDBTitle: nmr structure of the talin rod domain, 1655-1822
92c1jsdB_



not modelled 12.9 10
PDB header:viral protein
Chain: B: PDB Molecule:haemagglutinin (ha2 chain);
PDBTitle: crystal structure of swine h9 haemagglutinin
93c5zdiB_



not modelled 12.9 11
PDB header:chaperone
Chain: B: PDB Molecule:protein secretion chaperonin csaa;
PDBTitle: crystal structure of csaa chaperone protein from picrophilus torridus
94c3pe0B_



not modelled 12.4 11
PDB header:structural protein
Chain: B: PDB Molecule:plectin;
PDBTitle: structure of the central region of the plakin domain of plectin
95c5j2lB_



not modelled 11.7 15
PDB header:de novo protein
Chain: B: PDB Molecule:protein design 2l4hc2_11;
PDBTitle: de novo design of protein homo-oligomers with modular hydrogen bond2 network-mediated specificity
96c1htmB_



not modelled 11.7 11
PDB header:viral protein
Chain: B: PDB Molecule:hemagglutinin ha2 chain;
PDBTitle: structure of influenza haemagglutinin at the ph of membrane2 fusion
97c2h7vD_



not modelled 11.6 15
PDB header:signaling protein
Chain: D: PDB Molecule:protein kinase ypka;
PDBTitle: co-crystal structure of ypka-rac1
98c5i08A_



not modelled 11.5 16
PDB header:viral protein
Chain: A: PDB Molecule:spike glycoprotein, envelope glycoprotein chimera;
PDBTitle: prefusion structure of a human coronavirus spike protein
99c5j65A_



not modelled 11.3 10
PDB header:toxin
Chain: A: PDB Molecule:pesticidal crystal protein cry6aa;
PDBTitle: crystal structure of trypsin activated cry6aa

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below