Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0175_(-)_206812_207453
DateTue Jul 23 14:50:22 BST 2019
Unique Job ID1074088a20582e34
SequenceVKAADSAESD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:34.804 Y:29.306 Z:57.544
Model (left) based on template c5d9rA_
Top template information
PDB header:biosynthetic protein
Chain: A: PDB Molecule:protein accumulation and replication of chloroplasts 6,
PDBTitle: crystal structure of a conserved domain in the intermembrane space2 region of the plastid division protein arc6
Confidence and coverage
Confidence: 97.0% Coverage: 46%
97 residues ( 46% of your sequence) have been modelled with 97.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5d9rA_



97.0 8
PDB header:biosynthetic protein
Chain: A: PDB Molecule:protein accumulation and replication of chloroplasts 6,
PDBTitle: crystal structure of a conserved domain in the intermembrane space2 region of the plastid division protein arc6
2d2ux0a1



96.9 9
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
3d1hkxa_



96.5 9
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
4c5i97C_



96.4 7
PDB header:protein transport
Chain: C: PDB Molecule:conjugal transfer protein;
PDBTitle: structural analysis and inhibition of trae from the pkm101 type iv2 secretion system
5d3d9ra1



95.8 10
Fold:Cystatin-like
Superfamily:NTF2-like
Family:ECA1476-like
6c5u9oD_



95.6 16
PDB header:cell cycle
Chain: D: PDB Molecule:plastid division protein cdp1, chloroplastic,plastid
PDBTitle: cocrystal structure of the intermembrane space region of the plastid2 division proteins parc6 and pdv1
7d3cu3a1



95.4 11
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
8d2cc3a1



95.4 7
Fold:Cystatin-like
Superfamily:NTF2-like
Family:VirB8-like
9c4nhfF_



95.3 8
PDB header:protein transport
Chain: F: PDB Molecule:trwg protein;
PDBTitle: crystal structure of the soluble domain of trwg type iv secretion2 machinery from bartonella grahamii
10c4i4kB_



95.3 8
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein sgcj;
PDBTitle: streptomyces globisporus c-1027 9-membered enediyne conserved protein2 sgce6
11d2f86b1



95.2 9
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
12c5ig4A_



95.1 7
PDB header:transferase
Chain: A: PDB Molecule:predicted protein;
PDBTitle: crystal structure of n. vectensis camkii-a hub
13d3stda_



95.0 17
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Scytalone dehydratase
14c3a76B_



94.9 8
PDB header:lyase
Chain: B: PDB Molecule:gamma-hexachlorocyclohexane dehydrochlorinase;
PDBTitle: the crystal structure of lina
15d3b8la1



94.8 14
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
16c3h51A_



94.7 10
PDB header:protein binding
Chain: A: PDB Molecule:putative calcium/calmodulin dependent protein kinase ii
PDBTitle: crystal structure of putative calcium/calmodulin dependent protein2 kinase ii association domain (np_636218.1) from xanthomonas3 campestris at 1.70 a resolution
17c4ovmE_



94.7 12
PDB header:unknown function
Chain: E: PDB Molecule:uncharacterized protein sgcj;
PDBTitle: crystal structure of sgcj protein from streptomyces carzinostaticus
18c5cnlA_



94.5 11
PDB header:protein transport
Chain: A: PDB Molecule:icml-like;
PDBTitle: crystal structure of an icml-like type iv secretion system protein2 (lpg0120) from legionella pneumophila subsp. pneumophila str.3 philadelphia 1 at 2.65 a resolution
19d3ef8a1



94.4 7
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
20d1idpa_



94.2 19
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Scytalone dehydratase
21c3gzrA_



not modelled 94.1 8
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein with a ntf2-like fold;
PDBTitle: crystal structure of an uncharacterized protein with a cystatin-like2 fold (cc_2572) from caulobacter vibrioides at 1.40 a resolution
22d2rgqa1



not modelled 93.2 12
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Rv3472-like
23c3wz4F_



not modelled 92.6 15
PDB header:unknown function
Chain: F: PDB Molecule:doti;
PDBTitle: structure of the periplasmic domain of doti (crystal form i)
24d2rfra1



not modelled 92.6 8
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
25c3wz3A_



not modelled 92.5 9
PDB header:unknown function
Chain: A: PDB Molecule:tram protein;
PDBTitle: structure of a periplasmic fragment of tram
26d2bhma1



not modelled 90.9 10
Fold:Cystatin-like
Superfamily:NTF2-like
Family:VirB8-like
27c5ig5E_



not modelled 90.9 9
PDB header:transferase
Chain: E: PDB Molecule:camkii-b hub;
PDBTitle: crystal structure of n. vectensis camkii-b hub at ph 4.2
28c2bhmE_



not modelled 90.8 10
PDB header:bacterial protein
Chain: E: PDB Molecule:type iv secretion system protein virb8;
PDBTitle: crystal structure of virb8 from brucella suis
29c3f7sA_



not modelled 90.7 9
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized ntf2-like protein;
PDBTitle: crystal structure of a ntf2-like protein of unknown function (pp_4556)2 from pseudomonas putida kt2440 at 2.11 a resolution
30d3b7ca1



not modelled 90.4 11
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SO0125-like
31c6of9G_



not modelled 90.2 14
PDB header:unknown function
Chain: G: PDB Molecule:camkii hub;
PDBTitle: structure of the chlamydamonas reinhardtii camkii hub homology domain
32d3ebya1



not modelled 89.1 13
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
33c3robC_



not modelled 88.9 7
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized conserved protein;
PDBTitle: the crystal structure of a conserved protein from planctomyces2 limnophilus dsm 3776
34c3gwrA_



not modelled 88.6 8
PDB header:protein binding
Chain: A: PDB Molecule:putative calcium/calmodulin-dependent protein kinase type
PDBTitle: crystal structure of putative calcium/calmodulin-dependent protein2 kinase type ii association domain (yp_315894.1) from thiobacillus3 denitrificans atcc 25259 at 2.00 a resolution
35c4gb5A_



not modelled 87.0 10
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of kfla4162 protein from kribbella flavida
36c4hzbE_



not modelled 86.9 18
PDB header:hydrolase
Chain: E: PDB Molecule:putative periplasmic protein;
PDBTitle: crystal structure of the type vi semet effector-immunity complex tae3-2 tai3 from ralstonia pickettii
37c4lehA_



not modelled 86.7 6
PDB header:lyase
Chain: A: PDB Molecule:bile acid 7-alpha dehydratase, baie;
PDBTitle: crystal structure of a bile-acid 7-alpha dehydratase (closci_03134)2 from clostridium scindens atcc 35704 at 2.90 a resolution
38c3soyA_



not modelled 85.4 7
PDB header:membrane protein
Chain: A: PDB Molecule:ntf2-like superfamily protein;
PDBTitle: nuclear transport factor 2 (ntf2-like) superfamily protein from2 salmonella enterica subsp. enterica serovar typhimurium str. lt2
39d2b1xb1



not modelled 82.9 8
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
40d2chca1



not modelled 82.5 9
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Rv3472-like
41c3bb9D_



not modelled 79.6 14
PDB header:unknown function
Chain: D: PDB Molecule:putative orphan protein;
PDBTitle: crystal structure of a putative ketosteroid isomerase (sfri_1973) from2 shewanella frigidimarina ncimb 400 at 1.80 a resolution
42c6bjuD_



not modelled 75.1 7
PDB header:unknown function
Chain: D: PDB Molecule:atzh;
PDBTitle: the structure of atzh: a little known member of the atrazine breakdown2 pathway
43d3ejva1



not modelled 73.4 9
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
44c4meiA_



not modelled 72.7 10
PDB header:protein transport
Chain: A: PDB Molecule:virb8 protein;
PDBTitle: crystal structure of a virb8 type iv secretion system machinery2 soluble domain from bartonella tribocorum
45c5ig0A_



not modelled 70.0 21
PDB header:transferase
Chain: A: PDB Molecule:camk/camk2 protein kinase;
PDBTitle: crystal structure of s. rosetta camkii hub
46d3cnxa1



not modelled 67.9 10
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SAV4671-like
47d3bb9a1



not modelled 67.7 13
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SO0125-like
48c2rsxA_



not modelled 67.4 21
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:uncharacterized protein yoeb;
PDBTitle: solution structure of isea, an inhibitor protein of dl-endopeptidases2 from bacillus subtilis
49d2owpa1



not modelled 67.1 12
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BxeB1374-like
50c4fczB_



not modelled 65.2 20
PDB header:transport protein
Chain: B: PDB Molecule:toluene-tolerance protein;
PDBTitle: crystal structure of toluene-tolerance protein from pseudomonas putida2 (strain kt2440), northeast structural genomics consortium (nesg)3 target ppr99
51c2gbxF_



not modelled 64.8 14
PDB header:oxidoreductase
Chain: F: PDB Molecule:biphenyl 2,3-dioxygenase beta subunit;
PDBTitle: crystal structure of biphenyl 2,3-dioxygenase from sphingomonas2 yanoikuyae b1 bound to biphenyl
52c3k7cC_



not modelled 62.2 11
PDB header:protein binding
Chain: C: PDB Molecule:putative ntf2-like transpeptidase;
PDBTitle: crystal structure of putative ntf2-like transpeptidase (np_281412.1)2 from campylobacter jejuni at 2.00 a resolution
53c4o3vA_



not modelled 59.8 11
PDB header:protein transport
Chain: A: PDB Molecule:virb8-like protein of type iv secretion system;
PDBTitle: crystal structure of a virb8-like protein of type iv secretion system2 from rickettsia typhi
54d2r4ia1



not modelled 56.6 13
Fold:Cystatin-like
Superfamily:NTF2-like
Family:CHU142-like
55c3ub1C_



not modelled 54.5 8
PDB header:transport protein
Chain: C: PDB Molecule:orf13-like protein;
PDBTitle: ntf2 like protein involved in plasmid conjugation
56c3ke7A_



not modelled 53.3 17
PDB header:isomerase
Chain: A: PDB Molecule:putative ketosteroid isomerase;
PDBTitle: crystal structure of putative ketosteroid isomerase (yp_001303366.1)2 from parabacteroides distasonis atcc 8503 at 1.45 a resolution
57d3blza1



not modelled 49.5 6
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Sbal0622-like
58c3hx8A_



not modelled 47.7 14
PDB header:isomerase
Chain: A: PDB Molecule:putative ketosteroid isomerase;
PDBTitle: crystal structure of putative ketosteroid isomerase (np_103587.1) from2 mesorhizobium loti at 1.45 a resolution
59d1vqqa1



not modelled 41.9 8
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Penicillin binding protein 2a (PBP2A), N-terminal domain
60d3e99a1



not modelled 37.7 9
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
61c6f0kA_



not modelled 37.5 10
PDB header:membrane protein
Chain: A: PDB Molecule:cytochrome c family protein;
PDBTitle: alternative complex iii
62c6hwhX_



not modelled 37.2 19
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
63c3fkaD_



not modelled 34.9 20
PDB header:unknown function
Chain: D: PDB Molecule:uncharacterized ntf-2 like protein;
PDBTitle: crystal structure of a ntf-2 like protein of unknown function2 (spo1084) from silicibacter pomeroyi dss-3 at 1.69 a resolution
64c3fsdA_



not modelled 34.5 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ntf2-like protein of unknown function in nutrient uptake;
PDBTitle: crystal structure of ntf2-like protein of unknown function in nutrient2 uptake (yp_427473.1) from rhodospirillum rubrum atcc 11170 at 1.70 a3 resolution
65c2n6uA_



not modelled 33.0 21
PDB header:unknown function
Chain: A: PDB Molecule:astexin2-dc4;
PDBTitle: solution study of astexin2-dc4
66c3kspA_



not modelled 31.5 4
PDB header:unknown function
Chain: A: PDB Molecule:calcium/calmodulin-dependent kinase ii association domain;
PDBTitle: crystal structure of a putative ca/calmodulin-dependent kinase ii2 association domain (exig_1688) from exiguobacterium sibiricum 255-153 at 2.59 a resolution
67c2qguA_



not modelled 31.5 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:probable signal peptide protein;
PDBTitle: three-dimensional structure of the phospholipid-binding protein from2 ralstonia solanacearum q8xv73_ralsq in complex with a phospholipid at3 the resolution 1.53 a. northeast structural genomics consortium4 target rsr89
68c3hzpA_



not modelled 31.1 8
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ntf2-like protein of unknown function;
PDBTitle: crystal structure of ntf2-like protein of unknown function mn2a_05052 from prochlorococcus marinus (yp_291699.1) from prochlorococcus sp.3 natl2a at 1.40 a resolution
69c4ouqA_



not modelled 30.8 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf4783 family protein (bf1468) from2 bacteroides fragilis ych46 at 1.55 a resolution
70c3dukD_



not modelled 30.1 8
PDB header:unknown function
Chain: D: PDB Molecule:ntf2-like protein of unknown function;
PDBTitle: crystal structure of a ntf2-like protein of unknown function2 (mfla_0564) from methylobacillus flagellatus kt at 2.200 a resolution
71d2rcda1



not modelled 29.0 11
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BxeB1374-like
72c5up5A_



not modelled 26.5 29
PDB header:de novo protein
Chain: A: PDB Molecule:ehee_rd1_0284;
PDBTitle: solution structure of the de novo mini protein ehee_rd1_0284
73c3gzxB_



not modelled 26.2 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:biphenyl dioxygenase subunit beta;
PDBTitle: crystal structure of the biphenyl dioxygenase in complex with biphenyl2 from comamonas testosteroni sp. strain b-356
74c4r4gA_



not modelled 26.0 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative lipoprotein ycda;
PDBTitle: crystal structure of a putative lipoprotein (ycda) from bacillus2 subtilis subsp. subtilis str. 168 at 2.62 a resolution
75c4orlA_



not modelled 24.6 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf4783 family protein (bacova_04304) from2 bacteroides ovatus atcc 8483 at 1.40 a resolution
76c5uwaB_



not modelled 20.6 12
PDB header:transport protein
Chain: B: PDB Molecule:probable phospholipid-binding protein mlac;
PDBTitle: structure of e. coli phospholipid binding protein mlac
77c4ce4i_



not modelled 20.0 6
PDB header:ribosome
Chain: I: PDB Molecule:mrpl9;
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
78d1ulib_



not modelled 18.8 9
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
79c2lyyB_



not modelled 18.5 12
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: nmr structure of the protein nb7890a from shewanella sp
80c5ve9C_



not modelled 17.6 25
PDB header:protein binding
Chain: C: PDB Molecule:microtubule-actin cross-linking factor 1, isoforms 1/2/3/5;
PDBTitle: structure of hacf7 ef1-ef2-gar domains
81c5ts4A_



not modelled 17.5 24
PDB header:de novo protein
Chain: A: PDB Molecule:denovo ntf2;
PDBTitle: crystal structure of a de novo designed protein with curved beta-sheet
82c2k9yB_



not modelled 17.5 19
PDB header:transferase
Chain: B: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
83c2k9yA_



not modelled 17.5 19
PDB header:transferase
Chain: A: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
84d1v5ra1



not modelled 16.0 25
Fold:N domain of copper amine oxidase-like
Superfamily:GAS2 domain-like
Family:GAS2 domain
85d1wqlb1



not modelled 15.6 17
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
86c5o4uK_



not modelled 14.7 12
PDB header:cell adhesion
Chain: K: PDB Molecule:flagellin;
PDBTitle: the flagellin of pyrococcus furiosus
87c3r2cJ_



not modelled 14.5 30
PDB header:transcription/rna
Chain: J: PDB Molecule:30s ribosomal protein s10;
PDBTitle: crystal structure of antitermination factors nusb and nuse in complex2 with boxa rna
88c5z1lL_



not modelled 12.0 15
PDB header:protein fibril
Chain: L: PDB Molecule:flagellin;
PDBTitle: cryo-em structure of methanoccus maripaludis archaellum
89c2ks1B_



not modelled 11.1 40
PDB header:transferase
Chain: B: PDB Molecule:epidermal growth factor receptor;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
90c5c0sA_



not modelled 10.9 21
PDB header:viral protein/immune system
Chain: A: PDB Molecule:hemagglutinin, envelope glycoprotein, fibritin fusion
PDBTitle: crystal structure of a generation 4 influenza hemagglutinin stabilized2 stem in complex with the broadly neutralizing antibody cr6261
91c1wazA_



not modelled 10.4 20
PDB header:transport protein
Chain: A: PDB Molecule:merf;
PDBTitle: nmr structure determination of the bacterial mercury transporter,2 merf, in micelles
92c5xyiU_



not modelled 10.3 0
PDB header:ribosome
Chain: U: PDB Molecule:ribosomal protein s10p/s20e, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
93c2mewA_



not modelled 10.0 30
PDB header:structural protein
Chain: A: PDB Molecule:30s ribosomal protein s10;
PDBTitle: solution structure of nuse (s10) from thermotoga maritima
94c2k1kA_



not modelled 9.8 18
PDB header:signaling protein
Chain: A: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3
95c2k1kB_



not modelled 9.8 18
PDB header:signaling protein
Chain: B: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3
96c2k1lB_



not modelled 9.8 18
PDB header:signaling protein
Chain: B: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3
97c2k1lA_



not modelled 9.8 18
PDB header:signaling protein
Chain: A: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3
98c5x9jB_



not modelled 8.5 8
PDB header:isomerase
Chain: B: PDB Molecule:prhc;
PDBTitle: strucutre of prhc from penicillium brasilianum nbrc 6234
99c5tfyJ_



not modelled 7.8 15
PDB header:cell adhesion
Chain: J: PDB Molecule:flagellin;
PDBTitle: the archaeal flagellum of methanospirillum hungatei strain jf1.

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Transmembrane helix prediction 

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