Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0176_(-)_207450_208418
DateTue Jul 23 14:50:22 BST 2019
Unique Job ID69af26e9597d060d
SequenceVTVVVEKTPT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:25.063 Y:41.533 Z:46.439
Model (left) based on template c5u9oD_
Top template information
PDB header:cell cycle
Chain: D: PDB Molecule:plastid division protein cdp1, chloroplastic,plastid
PDBTitle: cocrystal structure of the intermembrane space region of the plastid2 division proteins parc6 and pdv1
Confidence and coverage
Confidence: 96.9% Coverage: 29%
93 residues ( 29% of your sequence) have been modelled with 96.9% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5u9oD_



96.9 10
PDB header:cell cycle
Chain: D: PDB Molecule:plastid division protein cdp1, chloroplastic,plastid
PDBTitle: cocrystal structure of the intermembrane space region of the plastid2 division proteins parc6 and pdv1
2c4i4kB_



96.7 12
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein sgcj;
PDBTitle: streptomyces globisporus c-1027 9-membered enediyne conserved protein2 sgce6
3d2ux0a1



96.7 8
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
4c3wz4F_



96.6 6
PDB header:unknown function
Chain: F: PDB Molecule:doti;
PDBTitle: structure of the periplasmic domain of doti (crystal form i)
5d1hkxa_



96.5 8
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
6c5d9rA_



96.4 14
PDB header:biosynthetic protein
Chain: A: PDB Molecule:protein accumulation and replication of chloroplasts 6,
PDBTitle: crystal structure of a conserved domain in the intermembrane space2 region of the plastid division protein arc6
7c5cnlA_



96.1 12
PDB header:protein transport
Chain: A: PDB Molecule:icml-like;
PDBTitle: crystal structure of an icml-like type iv secretion system protein2 (lpg0120) from legionella pneumophila subsp. pneumophila str.3 philadelphia 1 at 2.65 a resolution
8d2r4ia1



96.0 9
Fold:Cystatin-like
Superfamily:NTF2-like
Family:CHU142-like
9d3d9ra1



96.0 14
Fold:Cystatin-like
Superfamily:NTF2-like
Family:ECA1476-like
10c3gzrA_



95.9 12
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein with a ntf2-like fold;
PDBTitle: crystal structure of an uncharacterized protein with a cystatin-like2 fold (cc_2572) from caulobacter vibrioides at 1.40 a resolution
11c3a76B_



95.5 9
PDB header:lyase
Chain: B: PDB Molecule:gamma-hexachlorocyclohexane dehydrochlorinase;
PDBTitle: the crystal structure of lina
12d3b8la1



95.4 8
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
13c4ovmE_



95.4 9
PDB header:unknown function
Chain: E: PDB Molecule:uncharacterized protein sgcj;
PDBTitle: crystal structure of sgcj protein from streptomyces carzinostaticus
14d3ebya1



95.3 14
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
15c3wz3A_



95.3 6
PDB header:unknown function
Chain: A: PDB Molecule:tram protein;
PDBTitle: structure of a periplasmic fragment of tram
16c3hx8A_



94.6 11
PDB header:isomerase
Chain: A: PDB Molecule:putative ketosteroid isomerase;
PDBTitle: crystal structure of putative ketosteroid isomerase (np_103587.1) from2 mesorhizobium loti at 1.45 a resolution
17d3cu3a1



94.5 10
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
18d2f86b1



93.8 11
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
19d2rfra1



93.7 17
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
20d1idpa_



93.7 11
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Scytalone dehydratase
21d2rgqa1



not modelled 93.3 15
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Rv3472-like
22d3stda_



not modelled 93.3 11
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Scytalone dehydratase
23c3kspA_



not modelled 93.3 10
PDB header:unknown function
Chain: A: PDB Molecule:calcium/calmodulin-dependent kinase ii association domain;
PDBTitle: crystal structure of a putative ca/calmodulin-dependent kinase ii2 association domain (exig_1688) from exiguobacterium sibiricum 255-153 at 2.59 a resolution
24c3h51A_



not modelled 93.2 13
PDB header:protein binding
Chain: A: PDB Molecule:putative calcium/calmodulin dependent protein kinase ii
PDBTitle: crystal structure of putative calcium/calmodulin dependent protein2 kinase ii association domain (np_636218.1) from xanthomonas3 campestris at 1.70 a resolution
25d3b7ca1



not modelled 93.1 7
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SO0125-like
26c3robC_



not modelled 91.7 10
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized conserved protein;
PDBTitle: the crystal structure of a conserved protein from planctomyces2 limnophilus dsm 3776
27c5ig5E_



not modelled 91.3 11
PDB header:transferase
Chain: E: PDB Molecule:camkii-b hub;
PDBTitle: crystal structure of n. vectensis camkii-b hub at ph 4.2
28c5ig4A_



not modelled 91.2 12
PDB header:transferase
Chain: A: PDB Molecule:predicted protein;
PDBTitle: crystal structure of n. vectensis camkii-a hub
29d3ejva1



not modelled 90.6 9
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
30c3soyA_



not modelled 90.6 11
PDB header:membrane protein
Chain: A: PDB Molecule:ntf2-like superfamily protein;
PDBTitle: nuclear transport factor 2 (ntf2-like) superfamily protein from2 salmonella enterica subsp. enterica serovar typhimurium str. lt2
31d2chca1



not modelled 90.5 17
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Rv3472-like
32c3f7sA_



not modelled 90.3 9
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized ntf2-like protein;
PDBTitle: crystal structure of a ntf2-like protein of unknown function (pp_4556)2 from pseudomonas putida kt2440 at 2.11 a resolution
33c3fsdA_



not modelled 89.4 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ntf2-like protein of unknown function in nutrient uptake;
PDBTitle: crystal structure of ntf2-like protein of unknown function in nutrient2 uptake (yp_427473.1) from rhodospirillum rubrum atcc 11170 at 1.70 a3 resolution
34d3ef8a1



not modelled 89.1 8
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
35d3e99a1



not modelled 88.6 13
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
36c3bb9D_



not modelled 88.1 5
PDB header:unknown function
Chain: D: PDB Molecule:putative orphan protein;
PDBTitle: crystal structure of a putative ketosteroid isomerase (sfri_1973) from2 shewanella frigidimarina ncimb 400 at 1.80 a resolution
37d2cc3a1



not modelled 88.0 13
Fold:Cystatin-like
Superfamily:NTF2-like
Family:VirB8-like
38c3gwrA_



not modelled 87.9 12
PDB header:protein binding
Chain: A: PDB Molecule:putative calcium/calmodulin-dependent protein kinase type
PDBTitle: crystal structure of putative calcium/calmodulin-dependent protein2 kinase type ii association domain (yp_315894.1) from thiobacillus3 denitrificans atcc 25259 at 2.00 a resolution
39c5ig0A_



not modelled 86.6 9
PDB header:transferase
Chain: A: PDB Molecule:camk/camk2 protein kinase;
PDBTitle: crystal structure of s. rosetta camkii hub
40c4lehA_



not modelled 86.3 9
PDB header:lyase
Chain: A: PDB Molecule:bile acid 7-alpha dehydratase, baie;
PDBTitle: crystal structure of a bile-acid 7-alpha dehydratase (closci_03134)2 from clostridium scindens atcc 35704 at 2.90 a resolution
41d3blza1



not modelled 85.2 15
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Sbal0622-like
42d3cnxa1



not modelled 85.2 12
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SAV4671-like
43c3k7cC_



not modelled 78.2 8
PDB header:protein binding
Chain: C: PDB Molecule:putative ntf2-like transpeptidase;
PDBTitle: crystal structure of putative ntf2-like transpeptidase (np_281412.1)2 from campylobacter jejuni at 2.00 a resolution
44c4hzbE_



not modelled 78.1 7
PDB header:hydrolase
Chain: E: PDB Molecule:putative periplasmic protein;
PDBTitle: crystal structure of the type vi semet effector-immunity complex tae3-2 tai3 from ralstonia pickettii
45c6of9G_



not modelled 75.1 11
PDB header:unknown function
Chain: G: PDB Molecule:camkii hub;
PDBTitle: structure of the chlamydamonas reinhardtii camkii hub homology domain
46d2owpa1



not modelled 72.5 11
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BxeB1374-like
47c4gb5A_



not modelled 72.3 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of kfla4162 protein from kribbella flavida
48c4o3vA_



not modelled 71.5 12
PDB header:protein transport
Chain: A: PDB Molecule:virb8-like protein of type iv secretion system;
PDBTitle: crystal structure of a virb8-like protein of type iv secretion system2 from rickettsia typhi
49c2gbxF_



not modelled 70.3 11
PDB header:oxidoreductase
Chain: F: PDB Molecule:biphenyl 2,3-dioxygenase beta subunit;
PDBTitle: crystal structure of biphenyl 2,3-dioxygenase from sphingomonas2 yanoikuyae b1 bound to biphenyl
50d2bhma1



not modelled 70.0 16
Fold:Cystatin-like
Superfamily:NTF2-like
Family:VirB8-like
51c5i97C_



not modelled 68.0 14
PDB header:protein transport
Chain: C: PDB Molecule:conjugal transfer protein;
PDBTitle: structural analysis and inhibition of trae from the pkm101 type iv2 secretion system
52c6bjuD_



not modelled 67.0 10
PDB header:unknown function
Chain: D: PDB Molecule:atzh;
PDBTitle: the structure of atzh: a little known member of the atrazine breakdown2 pathway
53c4nhfF_



not modelled 65.9 13
PDB header:protein transport
Chain: F: PDB Molecule:trwg protein;
PDBTitle: crystal structure of the soluble domain of trwg type iv secretion2 machinery from bartonella grahamii
54c2bhmE_



not modelled 65.5 16
PDB header:bacterial protein
Chain: E: PDB Molecule:type iv secretion system protein virb8;
PDBTitle: crystal structure of virb8 from brucella suis
55c3hzpA_



not modelled 65.4 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ntf2-like protein of unknown function;
PDBTitle: crystal structure of ntf2-like protein of unknown function mn2a_05052 from prochlorococcus marinus (yp_291699.1) from prochlorococcus sp.3 natl2a at 1.40 a resolution
56d2b1xb1



not modelled 63.6 7
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
57c2rsxA_



not modelled 62.7 21
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:uncharacterized protein yoeb;
PDBTitle: solution structure of isea, an inhibitor protein of dl-endopeptidases2 from bacillus subtilis
58c4r4gA_



not modelled 58.8 28
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative lipoprotein ycda;
PDBTitle: crystal structure of a putative lipoprotein (ycda) from bacillus2 subtilis subsp. subtilis str. 168 at 2.62 a resolution
59d2rcda1



not modelled 58.7 8
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BxeB1374-like
60c4meiA_



not modelled 54.9 4
PDB header:protein transport
Chain: A: PDB Molecule:virb8 protein;
PDBTitle: crystal structure of a virb8 type iv secretion system machinery2 soluble domain from bartonella tribocorum
61c4fczB_



not modelled 53.5 13
PDB header:transport protein
Chain: B: PDB Molecule:toluene-tolerance protein;
PDBTitle: crystal structure of toluene-tolerance protein from pseudomonas putida2 (strain kt2440), northeast structural genomics consortium (nesg)3 target ppr99
62c3dukD_



not modelled 52.5 25
PDB header:unknown function
Chain: D: PDB Molecule:ntf2-like protein of unknown function;
PDBTitle: crystal structure of a ntf2-like protein of unknown function2 (mfla_0564) from methylobacillus flagellatus kt at 2.200 a resolution
63c3fkaD_



not modelled 48.2 25
PDB header:unknown function
Chain: D: PDB Molecule:uncharacterized ntf-2 like protein;
PDBTitle: crystal structure of a ntf-2 like protein of unknown function2 (spo1084) from silicibacter pomeroyi dss-3 at 1.69 a resolution
64d1vqqa1



not modelled 47.9 16
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Penicillin binding protein 2a (PBP2A), N-terminal domain
65c3j6vI_



not modelled 45.2 30
PDB header:ribosome
Chain: I: PDB Molecule:28s ribosomal protein s9, mitochondrial;
PDBTitle: cryo-em structure of the small subunit of the mammalian mitochondrial2 ribosome
66c4ce4i_



not modelled 39.2 17
PDB header:ribosome
Chain: I: PDB Molecule:mrpl9;
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
67c2qguA_



not modelled 37.2 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:probable signal peptide protein;
PDBTitle: three-dimensional structure of the phospholipid-binding protein from2 ralstonia solanacearum q8xv73_ralsq in complex with a phospholipid at3 the resolution 1.53 a. northeast structural genomics consortium4 target rsr89
68d3bb9a1



not modelled 36.2 9
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SO0125-like
69c2ml6A_



not modelled 29.8 29
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: nmr structure of protein zp_02069618.1 from bacteroides uniformis atcc2 8492
70c1mwuA_



not modelled 24.7 14
PDB header:biosynthetic protein
Chain: A: PDB Molecule:penicillin-binding protein 2a;
PDBTitle: structure of methicillin acyl-penicillin binding protein 2a from2 methicillin resistant staphylococcus aureus strain 27r at 2.60 a3 resolution.
71c4js0B_



not modelled 24.7 29
PDB header:signaling protein/signaling protein
Chain: B: PDB Molecule:brain-specific angiogenesis inhibitor 1-associated protein
PDBTitle: complex of cdc42 with the crib-pr domain of irsp53
72c5uwaB_



not modelled 21.7 9
PDB header:transport protein
Chain: B: PDB Molecule:probable phospholipid-binding protein mlac;
PDBTitle: structure of e. coli phospholipid binding protein mlac
73c2voyB_



not modelled 21.5 18
PDB header:hydrolase
Chain: B: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium atpase 1;
PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus
74d1t33a1



not modelled 19.2 11
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
75c5up5A_



not modelled 19.0 29
PDB header:de novo protein
Chain: A: PDB Molecule:ehee_rd1_0284;
PDBTitle: solution structure of the de novo mini protein ehee_rd1_0284
76c1t33B_



not modelled 16.3 11
PDB header:transcription
Chain: B: PDB Molecule:putative transcriptional repressor (tetr/acrr family);
PDBTitle: structural genomics, the crystal structure of a putative2 transcriptional repressor (tetr/acrr family) from salmonella3 typhimurim lt2
77c6gf8B_



not modelled 15.9 14
PDB header:cell adhesion
Chain: B: PDB Molecule:zona pellucida sperm-binding protein 1,zona pellucida
PDBTitle: molecular basis of egg coat filament cross-linking: structure of the2 glycosylated zp1 zp-n1 domain homodimer
78c3ke7A_



not modelled 14.6 9
PDB header:isomerase
Chain: A: PDB Molecule:putative ketosteroid isomerase;
PDBTitle: crystal structure of putative ketosteroid isomerase (yp_001303366.1)2 from parabacteroides distasonis atcc 8503 at 1.45 a resolution
79c4orlA_



not modelled 13.8 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf4783 family protein (bacova_04304) from2 bacteroides ovatus atcc 8483 at 1.40 a resolution
80d1hywa_



not modelled 13.7 29
Fold:gpW/XkdW-like
Superfamily:Head-to-tail joining protein W, gpW
Family:Head-to-tail joining protein W, gpW
81c4ouqA_



not modelled 13.2 5
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf4783 family protein (bf1468) from2 bacteroides fragilis ych46 at 1.55 a resolution
82d1ulib_



not modelled 12.0 13
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
83c3qk9B_



not modelled 11.8 16
PDB header:protein transport
Chain: B: PDB Molecule:mitochondrial import inner membrane translocase subunit
PDBTitle: yeast tim44 c-terminal domain complexed with cymal-3
84c4jgiB_



not modelled 11.1 7
PDB header:protein binding
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: 1.5 angstrom crystal structure of a novel cobalamin-binding protein2 from desulfitobacterium hafniense dcb-2
85d2gxfa1



not modelled 11.1 10
Fold:Cystatin-like
Superfamily:NTF2-like
Family:YybH-like
86c2n6uA_



not modelled 9.2 29
PDB header:unknown function
Chain: A: PDB Molecule:astexin2-dc4;
PDBTitle: solution study of astexin2-dc4
87d2f1la1



not modelled 8.9 27
Fold:PRC-barrel domain
Superfamily:PRC-barrel domain
Family:RimM C-terminal domain-like
88c3d00A_



not modelled 8.3 12
PDB header:metal binding protein
Chain: A: PDB Molecule:tungsten formylmethanofuran dehydrogenase subunit e;
PDBTitle: crystal structure of a tungsten formylmethanofuran dehydrogenase2 subunit e (fmde)-like protein (syn_00638) from syntrophus3 aciditrophicus at 1.90 a resolution
89c4jcbD_



not modelled 8.2 50
PDB header:photosynthesis
Chain: D: PDB Molecule:light-harvesting protein b-875 alpha chain;
PDBTitle: rc-lh1-pufx dimer complex from rhodobacter sphaeroides
90c4za6A_



not modelled 8.1 10
PDB header:signaling protein
Chain: A: PDB Molecule:tetr family transcriptional regulator;
PDBTitle: structure of the r. erythropolis transcriptional repressor qsdr from2 tetr family
91d1xk7a1



not modelled 7.9 18
Fold:CoA-transferase family III (CaiB/BaiF)
Superfamily:CoA-transferase family III (CaiB/BaiF)
Family:CoA-transferase family III (CaiB/BaiF)
92c2pv7B_



not modelled 7.8 11
PDB header:isomerase, oxidoreductase
Chain: B: PDB Molecule:t-protein [includes: chorismate mutase (ec 5.4.99.5) (cm)
PDBTitle: crystal structure of chorismate mutase / prephenate dehydrogenase2 (tyra) (1574749) from haemophilus influenzae rd at 2.00 a resolution
93c5yq72_



not modelled 7.7 24
PDB header:photosynthesis
Chain: 2: PDB Molecule:beta subunit of light-harvesting 1;
PDBTitle: cryo-em structure of the rc-lh core complex from roseiflexus2 castenholzii
94c5yx6D_



not modelled 7.3 17
PDB header:transferase
Chain: D: PDB Molecule:uncharacterized protein rv3272;
PDBTitle: crystal structure of rv3272 from m. tuberculosis orthorhombic form
95c4aq5C_



not modelled 7.2 3
PDB header:membrane protein
Chain: C: PDB Molecule:acetylcholine receptor delta subunit;
PDBTitle: gating movement in acetylcholine receptor analysed by time-resolved2 electron cryo-microscopy (closed class)
96c2bg9C_



not modelled 7.2 3
PDB header:ion channel/receptor
Chain: C: PDB Molecule:acetylcholine receptor protein, delta chain;
PDBTitle: refined structure of the nicotinic acetylcholine receptor2 at 4a resolution.
97c1xa3B_



not modelled 6.5 16
PDB header:transferase
Chain: B: PDB Molecule:crotonobetainyl-coa:carnitine coa-transferase;
PDBTitle: crystal structure of caib, a type iii coa transferase in2 carnitine metabolism
98c5ts4A_



not modelled 6.5 14
PDB header:de novo protein
Chain: A: PDB Molecule:denovo ntf2;
PDBTitle: crystal structure of a de novo designed protein with curved beta-sheet
99d1xrda1



not modelled 6.4 44
Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below