Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0177_(-)_208415_208969
DateTue Jul 23 14:50:23 BST 2019
Unique Job ID5f1080f62b59f8e4
SequenceMSPRRKFEPG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:31.574 Y:30.377 Z:52.493
Model (left) based on template c5d9rA_
Top template information
PDB header:biosynthetic protein
Chain: A: PDB Molecule:protein accumulation and replication of chloroplasts 6,
PDBTitle: crystal structure of a conserved domain in the intermembrane space2 region of the plastid division protein arc6
Confidence and coverage
Confidence: 96.7% Coverage: 52%
96 residues ( 52% of your sequence) have been modelled with 96.7% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
137 residues ( 74%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5d9rA_
96.7 15
PDB header:biosynthetic protein
Chain: A: PDB Molecule:protein accumulation and replication of chloroplasts 6,
PDBTitle: crystal structure of a conserved domain in the intermembrane space2 region of the plastid division protein arc6
2d2ux0a1
96.4 7
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
3c3a76B_
95.9 8
PDB header:lyase
Chain: B: PDB Molecule:gamma-hexachlorocyclohexane dehydrochlorinase;
PDBTitle: the crystal structure of lina
4d1hkxa_
95.9 9
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
5d3ef8a1
95.6 13
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
6c3wz4F_
95.6 10
PDB header:unknown function
Chain: F: PDB Molecule:doti;
PDBTitle: structure of the periplasmic domain of doti (crystal form i)
7d1idpa_
95.4 14
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Scytalone dehydratase
8d3stda_
95.3 12
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Scytalone dehydratase
9d2f86b1
95.0 5
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
10c5ig5E_
94.8 10
PDB header:transferase
Chain: E: PDB Molecule:camkii-b hub;
PDBTitle: crystal structure of n. vectensis camkii-b hub at ph 4.2
11c5ig4A_
94.5 8
PDB header:transferase
Chain: A: PDB Molecule:predicted protein;
PDBTitle: crystal structure of n. vectensis camkii-a hub
12d3d9ra1
94.3 18
Fold:Cystatin-like
Superfamily:NTF2-like
Family:ECA1476-like
13c3f7sA_
94.3 7
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized ntf2-like protein;
PDBTitle: crystal structure of a ntf2-like protein of unknown function (pp_4556)2 from pseudomonas putida kt2440 at 2.11 a resolution
14c5cnlA_
94.0 4
PDB header:protein transport
Chain: A: PDB Molecule:icml-like;
PDBTitle: crystal structure of an icml-like type iv secretion system protein2 (lpg0120) from legionella pneumophila subsp. pneumophila str.3 philadelphia 1 at 2.65 a resolution
15c5u9oD_
93.9 8
PDB header:cell cycle
Chain: D: PDB Molecule:plastid division protein cdp1, chloroplastic,plastid
PDBTitle: cocrystal structure of the intermembrane space region of the plastid2 division proteins parc6 and pdv1
16d3cu3a1
93.7 13
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
17c4lehA_
93.6 13
PDB header:lyase
Chain: A: PDB Molecule:bile acid 7-alpha dehydratase, baie;
PDBTitle: crystal structure of a bile-acid 7-alpha dehydratase (closci_03134)2 from clostridium scindens atcc 35704 at 2.90 a resolution
18c3h51A_
93.4 6
PDB header:protein binding
Chain: A: PDB Molecule:putative calcium/calmodulin dependent protein kinase ii
PDBTitle: crystal structure of putative calcium/calmodulin dependent protein2 kinase ii association domain (np_636218.1) from xanthomonas3 campestris at 1.70 a resolution
19d3b8la1
93.2 15
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
20d2cc3a1
93.2 14
Fold:Cystatin-like
Superfamily:NTF2-like
Family:VirB8-like
21c3wz3A_
not modelled 93.0 12
PDB header:unknown function
Chain: A: PDB Molecule:tram protein;
PDBTitle: structure of a periplasmic fragment of tram
22c5i97C_
not modelled 92.8 8
PDB header:protein transport
Chain: C: PDB Molecule:conjugal transfer protein;
PDBTitle: structural analysis and inhibition of trae from the pkm101 type iv2 secretion system
23d3ebya1
not modelled 92.7 12
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
24c3gzrA_
not modelled 92.6 13
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein with a ntf2-like fold;
PDBTitle: crystal structure of an uncharacterized protein with a cystatin-like2 fold (cc_2572) from caulobacter vibrioides at 1.40 a resolution
25d2b1xb1
not modelled 92.4 8
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
26d2rfra1
not modelled 92.3 8
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
27c3robC_
not modelled 91.6 17
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized conserved protein;
PDBTitle: the crystal structure of a conserved protein from planctomyces2 limnophilus dsm 3776
28d3b7ca1
not modelled 91.5 9
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SO0125-like
29c4ovmE_
not modelled 91.4 8
PDB header:unknown function
Chain: E: PDB Molecule:uncharacterized protein sgcj;
PDBTitle: crystal structure of sgcj protein from streptomyces carzinostaticus
30c4i4kB_
not modelled 91.3 14
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein sgcj;
PDBTitle: streptomyces globisporus c-1027 9-membered enediyne conserved protein2 sgce6
31c4nhfF_
not modelled 90.6 9
PDB header:protein transport
Chain: F: PDB Molecule:trwg protein;
PDBTitle: crystal structure of the soluble domain of trwg type iv secretion2 machinery from bartonella grahamii
32d2rgqa1
not modelled 90.4 7
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Rv3472-like
33c4gb5A_
not modelled 89.1 10
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of kfla4162 protein from kribbella flavida
34c3gwrA_
not modelled 87.9 10
PDB header:protein binding
Chain: A: PDB Molecule:putative calcium/calmodulin-dependent protein kinase type
PDBTitle: crystal structure of putative calcium/calmodulin-dependent protein2 kinase type ii association domain (yp_315894.1) from thiobacillus3 denitrificans atcc 25259 at 2.00 a resolution
35d2r4ia1
not modelled 87.8 14
Fold:Cystatin-like
Superfamily:NTF2-like
Family:CHU142-like
36c6of9G_
not modelled 87.3 15
PDB header:unknown function
Chain: G: PDB Molecule:camkii hub;
PDBTitle: structure of the chlamydamonas reinhardtii camkii hub homology domain
37c2rsxA_
not modelled 86.9 35
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:uncharacterized protein yoeb;
PDBTitle: solution structure of isea, an inhibitor protein of dl-endopeptidases2 from bacillus subtilis
38d2chca1
not modelled 86.7 13
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Rv3472-like
39c3soyA_
not modelled 84.9 9
PDB header:membrane protein
Chain: A: PDB Molecule:ntf2-like superfamily protein;
PDBTitle: nuclear transport factor 2 (ntf2-like) superfamily protein from2 salmonella enterica subsp. enterica serovar typhimurium str. lt2
40c2gbxF_
not modelled 82.8 13
PDB header:oxidoreductase
Chain: F: PDB Molecule:biphenyl 2,3-dioxygenase beta subunit;
PDBTitle: crystal structure of biphenyl 2,3-dioxygenase from sphingomonas2 yanoikuyae b1 bound to biphenyl
41c4hzbE_
not modelled 82.0 22
PDB header:hydrolase
Chain: E: PDB Molecule:putative periplasmic protein;
PDBTitle: crystal structure of the type vi semet effector-immunity complex tae3-2 tai3 from ralstonia pickettii
42c5ig0A_
not modelled 79.4 16
PDB header:transferase
Chain: A: PDB Molecule:camk/camk2 protein kinase;
PDBTitle: crystal structure of s. rosetta camkii hub
43d3cnxa1
not modelled 78.5 12
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SAV4671-like
44d3ejva1
not modelled 76.4 18
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
45c6bjuD_
not modelled 75.5 15
PDB header:unknown function
Chain: D: PDB Molecule:atzh;
PDBTitle: the structure of atzh: a little known member of the atrazine breakdown2 pathway
46d2owpa1
not modelled 70.9 10
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BxeB1374-like
47d3bb9a1
not modelled 66.2 11
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SO0125-like
48c4meiA_
not modelled 65.7 8
PDB header:protein transport
Chain: A: PDB Molecule:virb8 protein;
PDBTitle: crystal structure of a virb8 type iv secretion system machinery2 soluble domain from bartonella tribocorum
49c4o3vA_
not modelled 64.9 8
PDB header:protein transport
Chain: A: PDB Molecule:virb8-like protein of type iv secretion system;
PDBTitle: crystal structure of a virb8-like protein of type iv secretion system2 from rickettsia typhi
50c3bb9D_
not modelled 63.8 21
PDB header:unknown function
Chain: D: PDB Molecule:putative orphan protein;
PDBTitle: crystal structure of a putative ketosteroid isomerase (sfri_1973) from2 shewanella frigidimarina ncimb 400 at 1.80 a resolution
51c2qguA_
not modelled 61.6 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:probable signal peptide protein;
PDBTitle: three-dimensional structure of the phospholipid-binding protein from2 ralstonia solanacearum q8xv73_ralsq in complex with a phospholipid at3 the resolution 1.53 a. northeast structural genomics consortium4 target rsr89
52c2bhmE_
not modelled 60.7 11
PDB header:bacterial protein
Chain: E: PDB Molecule:type iv secretion system protein virb8;
PDBTitle: crystal structure of virb8 from brucella suis
53c3kspA_
not modelled 58.9 16
PDB header:unknown function
Chain: A: PDB Molecule:calcium/calmodulin-dependent kinase ii association domain;
PDBTitle: crystal structure of a putative ca/calmodulin-dependent kinase ii2 association domain (exig_1688) from exiguobacterium sibiricum 255-153 at 2.59 a resolution
54c3hx8A_
not modelled 56.9 14
PDB header:isomerase
Chain: A: PDB Molecule:putative ketosteroid isomerase;
PDBTitle: crystal structure of putative ketosteroid isomerase (np_103587.1) from2 mesorhizobium loti at 1.45 a resolution
55c3dukD_
not modelled 56.6 17
PDB header:unknown function
Chain: D: PDB Molecule:ntf2-like protein of unknown function;
PDBTitle: crystal structure of a ntf2-like protein of unknown function2 (mfla_0564) from methylobacillus flagellatus kt at 2.200 a resolution
56d2bhma1
not modelled 55.9 10
Fold:Cystatin-like
Superfamily:NTF2-like
Family:VirB8-like
57c5uwaB_
not modelled 54.4 13
PDB header:transport protein
Chain: B: PDB Molecule:probable phospholipid-binding protein mlac;
PDBTitle: structure of e. coli phospholipid binding protein mlac
58c4fczB_
not modelled 52.7 16
PDB header:transport protein
Chain: B: PDB Molecule:toluene-tolerance protein;
PDBTitle: crystal structure of toluene-tolerance protein from pseudomonas putida2 (strain kt2440), northeast structural genomics consortium (nesg)3 target ppr99
59c3fkaD_
not modelled 51.4 25
PDB header:unknown function
Chain: D: PDB Molecule:uncharacterized ntf-2 like protein;
PDBTitle: crystal structure of a ntf-2 like protein of unknown function2 (spo1084) from silicibacter pomeroyi dss-3 at 1.69 a resolution
60d1ulib_
not modelled 50.0 8
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
61d3e99a1
not modelled 49.6 13
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
62c3k7cC_
not modelled 44.7 9
PDB header:protein binding
Chain: C: PDB Molecule:putative ntf2-like transpeptidase;
PDBTitle: crystal structure of putative ntf2-like transpeptidase (np_281412.1)2 from campylobacter jejuni at 2.00 a resolution
63c3ke7A_
not modelled 41.7 20
PDB header:isomerase
Chain: A: PDB Molecule:putative ketosteroid isomerase;
PDBTitle: crystal structure of putative ketosteroid isomerase (yp_001303366.1)2 from parabacteroides distasonis atcc 8503 at 1.45 a resolution
64c3gzxB_
not modelled 31.9 11
PDB header:oxidoreductase
Chain: B: PDB Molecule:biphenyl dioxygenase subunit beta;
PDBTitle: crystal structure of the biphenyl dioxygenase in complex with biphenyl2 from comamonas testosteroni sp. strain b-356
65c3fsdA_
not modelled 31.8 9
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ntf2-like protein of unknown function in nutrient uptake;
PDBTitle: crystal structure of ntf2-like protein of unknown function in nutrient2 uptake (yp_427473.1) from rhodospirillum rubrum atcc 11170 at 1.70 a3 resolution
66c4r4gA_
not modelled 31.2 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative lipoprotein ycda;
PDBTitle: crystal structure of a putative lipoprotein (ycda) from bacillus2 subtilis subsp. subtilis str. 168 at 2.62 a resolution
67d1vqqa1
not modelled 29.4 11
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Penicillin binding protein 2a (PBP2A), N-terminal domain
68d2cw9a1
not modelled 26.3 5
Fold:Cystatin-like
Superfamily:NTF2-like
Family:TIM44-like
69c3qk9B_
not modelled 24.7 6
PDB header:protein transport
Chain: B: PDB Molecule:mitochondrial import inner membrane translocase subunit
PDBTitle: yeast tim44 c-terminal domain complexed with cymal-3
70c6f0kA_
not modelled 23.0 13
PDB header:membrane protein
Chain: A: PDB Molecule:cytochrome c family protein;
PDBTitle: alternative complex iii
71c5ve9C_
not modelled 22.4 25
PDB header:protein binding
Chain: C: PDB Molecule:microtubule-actin cross-linking factor 1, isoforms 1/2/3/5;
PDBTitle: structure of hacf7 ef1-ef2-gar domains
72c5up5A_
not modelled 22.2 36
PDB header:de novo protein
Chain: A: PDB Molecule:ehee_rd1_0284;
PDBTitle: solution structure of the de novo mini protein ehee_rd1_0284
73d3blza1
not modelled 19.9 11
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Sbal0622-like
74d1v5ra1
not modelled 19.8 25
Fold:N domain of copper amine oxidase-like
Superfamily:GAS2 domain-like
Family:GAS2 domain
75c2n6uA_
not modelled 19.0 29
PDB header:unknown function
Chain: A: PDB Molecule:astexin2-dc4;
PDBTitle: solution study of astexin2-dc4
76c4orlA_
not modelled 18.9 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf4783 family protein (bacova_04304) from2 bacteroides ovatus atcc 8483 at 1.40 a resolution
77c4ouqA_
not modelled 18.3 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf4783 family protein (bf1468) from2 bacteroides fragilis ych46 at 1.55 a resolution
78d2rcda1
not modelled 15.6 15
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BxeB1374-like
79d1wqlb1
not modelled 15.2 7
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
80c5z1lL_
not modelled 14.9 24
PDB header:protein fibril
Chain: L: PDB Molecule:flagellin;
PDBTitle: cryo-em structure of methanoccus maripaludis archaellum
81c3r2cJ_
not modelled 14.7 6
PDB header:transcription/rna
Chain: J: PDB Molecule:30s ribosomal protein s10;
PDBTitle: crystal structure of antitermination factors nusb and nuse in complex2 with boxa rna
82d2gxfa1
not modelled 13.3 11
Fold:Cystatin-like
Superfamily:NTF2-like
Family:YybH-like
83c1mwuA_
not modelled 12.3 9
PDB header:biosynthetic protein
Chain: A: PDB Molecule:penicillin-binding protein 2a;
PDBTitle: structure of methicillin acyl-penicillin binding protein 2a from2 methicillin resistant staphylococcus aureus strain 27r at 2.60 a3 resolution.
84c5o4uK_
not modelled 12.2 22
PDB header:cell adhesion
Chain: K: PDB Molecule:flagellin;
PDBTitle: the flagellin of pyrococcus furiosus
85c5tfyJ_
not modelled 12.1 18
PDB header:cell adhesion
Chain: J: PDB Molecule:flagellin;
PDBTitle: the archaeal flagellum of methanospirillum hungatei strain jf1.
86c6hwhX_
not modelled 11.2 16
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
87c3hzpA_
not modelled 10.5 9
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ntf2-like protein of unknown function;
PDBTitle: crystal structure of ntf2-like protein of unknown function mn2a_05052 from prochlorococcus marinus (yp_291699.1) from prochlorococcus sp.3 natl2a at 1.40 a resolution
88c1zeqX_
not modelled 10.5 15
PDB header:metal binding protein
Chain: X: PDB Molecule:cation efflux system protein cusf;
PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli
89c5ts4A_
not modelled 10.1 14
PDB header:de novo protein
Chain: A: PDB Molecule:denovo ntf2;
PDBTitle: crystal structure of a de novo designed protein with curved beta-sheet
90c5kzoA_
not modelled 10.0 16
PDB header:transcription
Chain: A: PDB Molecule:neurogenic locus notch homolog protein 1;
PDBTitle: notch1 transmembrane and associated juxtamembrane segment
91c4irnF_
not modelled 9.8 16
PDB header:oxidoreductase
Chain: F: PDB Molecule:prolyl-acp dehydrogenase;
PDBTitle: crystal structure of the prolyl acyl carrier protein oxidase anab
92c2mewA_
not modelled 9.8 17
PDB header:structural protein
Chain: A: PDB Molecule:30s ribosomal protein s10;
PDBTitle: solution structure of nuse (s10) from thermotoga maritima
93c3gf6B_
not modelled 9.0 23
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized bacterial lipoprotein;
PDBTitle: crystal structure of a bacterial lipoprotein (bt_1233) from2 bacteroides thetaiotaomicron vpi-5482 at 1.69 a resolution
94c5zwzA_
not modelled 8.9 7
PDB header:gene regulation
Chain: A: PDB Molecule:agenet domain-containing protein;
PDBTitle: crystal structure of arabidopsis thaliana agdp1 agd34
95c6hwhB_
not modelled 8.7 14
PDB header:electron transport
Chain: B: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
96c1wazA_
not modelled 8.5 18
PDB header:transport protein
Chain: A: PDB Molecule:merf;
PDBTitle: nmr structure determination of the bacterial mercury transporter,2 merf, in micelles
97c2kncA_
not modelled 8.3 12
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
98c3efyB_
not modelled 7.8 18
PDB header:cell cycle
Chain: B: PDB Molecule:cif (cell cycle inhibiting factor);
PDBTitle: structure of the cyclomodulin cif from pathogenic2 escherichia coli
99c1r2jA_
not modelled 7.1 8
PDB header:oxidoreductase
Chain: A: PDB Molecule:protein fkbi;
PDBTitle: fkbi for biosynthesis of methoxymalonyl extender unit of fk5202 polyketide immunosuppresant

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below