Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0178_(-)_208936_209670
DateTue Jul 23 14:50:23 BST 2019
Unique Job ID5c0410d6e32c5284
SequenceVEDQQSASGD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:27.581 Y:38.090 Z:51.729
Model (left) based on template c5u9oD_
Top template information
PDB header:cell cycle
Chain: D: PDB Molecule:plastid division protein cdp1, chloroplastic,plastid
PDBTitle: cocrystal structure of the intermembrane space region of the plastid2 division proteins parc6 and pdv1
Confidence and coverage
Confidence: 97.2% Coverage: 39%
95 residues ( 39% of your sequence) have been modelled with 97.2% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5u9oD_



97.2 13
PDB header:cell cycle
Chain: D: PDB Molecule:plastid division protein cdp1, chloroplastic,plastid
PDBTitle: cocrystal structure of the intermembrane space region of the plastid2 division proteins parc6 and pdv1
2c5d9rA_



97.1 16
PDB header:biosynthetic protein
Chain: A: PDB Molecule:protein accumulation and replication of chloroplasts 6,
PDBTitle: crystal structure of a conserved domain in the intermembrane space2 region of the plastid division protein arc6
3c3wz4F_



96.9 15
PDB header:unknown function
Chain: F: PDB Molecule:doti;
PDBTitle: structure of the periplasmic domain of doti (crystal form i)
4c5cnlA_



96.7 14
PDB header:protein transport
Chain: A: PDB Molecule:icml-like;
PDBTitle: crystal structure of an icml-like type iv secretion system protein2 (lpg0120) from legionella pneumophila subsp. pneumophila str.3 philadelphia 1 at 2.65 a resolution
5d2rfra1



96.7 19
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
6c3a76B_



96.2 12
PDB header:lyase
Chain: B: PDB Molecule:gamma-hexachlorocyclohexane dehydrochlorinase;
PDBTitle: the crystal structure of lina
7d3b8la1



96.2 15
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
8d2ux0a1



96.1 11
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
9d3stda_



96.1 10
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Scytalone dehydratase
10d3cu3a1



96.0 10
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
11c4i4kB_



95.9 10
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein sgcj;
PDBTitle: streptomyces globisporus c-1027 9-membered enediyne conserved protein2 sgce6
12c3gzrA_



95.9 12
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein with a ntf2-like fold;
PDBTitle: crystal structure of an uncharacterized protein with a cystatin-like2 fold (cc_2572) from caulobacter vibrioides at 1.40 a resolution
13d1idpa_



95.6 10
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Scytalone dehydratase
14c3h51A_



95.4 16
PDB header:protein binding
Chain: A: PDB Molecule:putative calcium/calmodulin dependent protein kinase ii
PDBTitle: crystal structure of putative calcium/calmodulin dependent protein2 kinase ii association domain (np_636218.1) from xanthomonas3 campestris at 1.70 a resolution
15c3wz3A_



95.2 9
PDB header:unknown function
Chain: A: PDB Molecule:tram protein;
PDBTitle: structure of a periplasmic fragment of tram
16c4ovmE_



94.7 11
PDB header:unknown function
Chain: E: PDB Molecule:uncharacterized protein sgcj;
PDBTitle: crystal structure of sgcj protein from streptomyces carzinostaticus
17d1hkxa_



94.5 11
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
18c4nhfF_



94.3 11
PDB header:protein transport
Chain: F: PDB Molecule:trwg protein;
PDBTitle: crystal structure of the soluble domain of trwg type iv secretion2 machinery from bartonella grahamii
19c5i97C_



94.2 10
PDB header:protein transport
Chain: C: PDB Molecule:conjugal transfer protein;
PDBTitle: structural analysis and inhibition of trae from the pkm101 type iv2 secretion system
20d3ef8a1



94.1 11
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
21d2rgqa1



not modelled 94.1 7
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Rv3472-like
22c3robC_



not modelled 93.9 10
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized conserved protein;
PDBTitle: the crystal structure of a conserved protein from planctomyces2 limnophilus dsm 3776
23c5ig5E_



not modelled 93.7 12
PDB header:transferase
Chain: E: PDB Molecule:camkii-b hub;
PDBTitle: crystal structure of n. vectensis camkii-b hub at ph 4.2
24c3k7cC_



not modelled 93.4 15
PDB header:protein binding
Chain: C: PDB Molecule:putative ntf2-like transpeptidase;
PDBTitle: crystal structure of putative ntf2-like transpeptidase (np_281412.1)2 from campylobacter jejuni at 2.00 a resolution
25d2chca1



not modelled 93.2 15
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Rv3472-like
26d2cc3a1



not modelled 93.1 11
Fold:Cystatin-like
Superfamily:NTF2-like
Family:VirB8-like
27d3ebya1



not modelled 92.9 13
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
28d3ejva1



not modelled 92.7 17
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
29c4lehA_



not modelled 92.2 9
PDB header:lyase
Chain: A: PDB Molecule:bile acid 7-alpha dehydratase, baie;
PDBTitle: crystal structure of a bile-acid 7-alpha dehydratase (closci_03134)2 from clostridium scindens atcc 35704 at 2.90 a resolution
30d3d9ra1



not modelled 91.7 14
Fold:Cystatin-like
Superfamily:NTF2-like
Family:ECA1476-like
31c3f7sA_



not modelled 89.1 12
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized ntf2-like protein;
PDBTitle: crystal structure of a ntf2-like protein of unknown function (pp_4556)2 from pseudomonas putida kt2440 at 2.11 a resolution
32c3hx8A_



not modelled 89.0 14
PDB header:isomerase
Chain: A: PDB Molecule:putative ketosteroid isomerase;
PDBTitle: crystal structure of putative ketosteroid isomerase (np_103587.1) from2 mesorhizobium loti at 1.45 a resolution
33c6of9G_



not modelled 88.9 15
PDB header:unknown function
Chain: G: PDB Molecule:camkii hub;
PDBTitle: structure of the chlamydamonas reinhardtii camkii hub homology domain
34c5ig4A_



not modelled 88.5 10
PDB header:transferase
Chain: A: PDB Molecule:predicted protein;
PDBTitle: crystal structure of n. vectensis camkii-a hub
35d2f86b1



not modelled 88.2 11
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
36c4gb5A_



not modelled 87.5 10
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of kfla4162 protein from kribbella flavida
37c4hzbE_



not modelled 85.9 21
PDB header:hydrolase
Chain: E: PDB Molecule:putative periplasmic protein;
PDBTitle: crystal structure of the type vi semet effector-immunity complex tae3-2 tai3 from ralstonia pickettii
38c2bhmE_



not modelled 85.4 14
PDB header:bacterial protein
Chain: E: PDB Molecule:type iv secretion system protein virb8;
PDBTitle: crystal structure of virb8 from brucella suis
39c3bb9D_



not modelled 85.2 11
PDB header:unknown function
Chain: D: PDB Molecule:putative orphan protein;
PDBTitle: crystal structure of a putative ketosteroid isomerase (sfri_1973) from2 shewanella frigidimarina ncimb 400 at 1.80 a resolution
40d3b7ca1



not modelled 85.0 14
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SO0125-like
41d2b1xb1



not modelled 84.8 8
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
42c2gbxF_



not modelled 84.6 12
PDB header:oxidoreductase
Chain: F: PDB Molecule:biphenyl 2,3-dioxygenase beta subunit;
PDBTitle: crystal structure of biphenyl 2,3-dioxygenase from sphingomonas2 yanoikuyae b1 bound to biphenyl
43d2bhma1



not modelled 83.4 13
Fold:Cystatin-like
Superfamily:NTF2-like
Family:VirB8-like
44c3soyA_



not modelled 82.7 13
PDB header:membrane protein
Chain: A: PDB Molecule:ntf2-like superfamily protein;
PDBTitle: nuclear transport factor 2 (ntf2-like) superfamily protein from2 salmonella enterica subsp. enterica serovar typhimurium str. lt2
45d3blza1



not modelled 82.3 18
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Sbal0622-like
46c4meiA_



not modelled 81.2 6
PDB header:protein transport
Chain: A: PDB Molecule:virb8 protein;
PDBTitle: crystal structure of a virb8 type iv secretion system machinery2 soluble domain from bartonella tribocorum
47c3gwrA_



not modelled 79.7 9
PDB header:protein binding
Chain: A: PDB Molecule:putative calcium/calmodulin-dependent protein kinase type
PDBTitle: crystal structure of putative calcium/calmodulin-dependent protein2 kinase type ii association domain (yp_315894.1) from thiobacillus3 denitrificans atcc 25259 at 2.00 a resolution
48d2r4ia1



not modelled 75.9 17
Fold:Cystatin-like
Superfamily:NTF2-like
Family:CHU142-like
49c3ub1C_



not modelled 75.4 20
PDB header:transport protein
Chain: C: PDB Molecule:orf13-like protein;
PDBTitle: ntf2 like protein involved in plasmid conjugation
50d3bb9a1



not modelled 72.4 16
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SO0125-like
51c3dukD_



not modelled 68.8 17
PDB header:unknown function
Chain: D: PDB Molecule:ntf2-like protein of unknown function;
PDBTitle: crystal structure of a ntf2-like protein of unknown function2 (mfla_0564) from methylobacillus flagellatus kt at 2.200 a resolution
52c5ig0A_



not modelled 68.5 10
PDB header:transferase
Chain: A: PDB Molecule:camk/camk2 protein kinase;
PDBTitle: crystal structure of s. rosetta camkii hub
53d3cnxa1



not modelled 67.8 12
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SAV4671-like
54c2rsxA_



not modelled 67.2 14
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:uncharacterized protein yoeb;
PDBTitle: solution structure of isea, an inhibitor protein of dl-endopeptidases2 from bacillus subtilis
55c3fkaD_



not modelled 67.0 17
PDB header:unknown function
Chain: D: PDB Molecule:uncharacterized ntf-2 like protein;
PDBTitle: crystal structure of a ntf-2 like protein of unknown function2 (spo1084) from silicibacter pomeroyi dss-3 at 1.69 a resolution
56d3e99a1



not modelled 66.2 6
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
57d2owpa1



not modelled 58.5 11
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BxeB1374-like
58c2qguA_



not modelled 58.0 10
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:probable signal peptide protein;
PDBTitle: three-dimensional structure of the phospholipid-binding protein from2 ralstonia solanacearum q8xv73_ralsq in complex with a phospholipid at3 the resolution 1.53 a. northeast structural genomics consortium4 target rsr89
59c4o3vA_



not modelled 54.3 8
PDB header:protein transport
Chain: A: PDB Molecule:virb8-like protein of type iv secretion system;
PDBTitle: crystal structure of a virb8-like protein of type iv secretion system2 from rickettsia typhi
60c5uwaB_



not modelled 49.4 11
PDB header:transport protein
Chain: B: PDB Molecule:probable phospholipid-binding protein mlac;
PDBTitle: structure of e. coli phospholipid binding protein mlac
61c3ke7A_



not modelled 43.9 14
PDB header:isomerase
Chain: A: PDB Molecule:putative ketosteroid isomerase;
PDBTitle: crystal structure of putative ketosteroid isomerase (yp_001303366.1)2 from parabacteroides distasonis atcc 8503 at 1.45 a resolution
62c3kspA_



not modelled 36.5 7
PDB header:unknown function
Chain: A: PDB Molecule:calcium/calmodulin-dependent kinase ii association domain;
PDBTitle: crystal structure of a putative ca/calmodulin-dependent kinase ii2 association domain (exig_1688) from exiguobacterium sibiricum 255-153 at 2.59 a resolution
63c4r4gA_



not modelled 31.8 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative lipoprotein ycda;
PDBTitle: crystal structure of a putative lipoprotein (ycda) from bacillus2 subtilis subsp. subtilis str. 168 at 2.62 a resolution
64c2ml6A_



not modelled 31.3 35
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: nmr structure of protein zp_02069618.1 from bacteroides uniformis atcc2 8492
65d1o7nb_



not modelled 29.8 11
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
66c4fczB_



not modelled 29.7 8
PDB header:transport protein
Chain: B: PDB Molecule:toluene-tolerance protein;
PDBTitle: crystal structure of toluene-tolerance protein from pseudomonas putida2 (strain kt2440), northeast structural genomics consortium (nesg)3 target ppr99
67c3gzxB_



not modelled 29.5 5
PDB header:oxidoreductase
Chain: B: PDB Molecule:biphenyl dioxygenase subunit beta;
PDBTitle: crystal structure of the biphenyl dioxygenase in complex with biphenyl2 from comamonas testosteroni sp. strain b-356
68c5up5A_



not modelled 29.1 36
PDB header:de novo protein
Chain: A: PDB Molecule:ehee_rd1_0284;
PDBTitle: solution structure of the de novo mini protein ehee_rd1_0284
69c3fsdA_



not modelled 27.7 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ntf2-like protein of unknown function in nutrient uptake;
PDBTitle: crystal structure of ntf2-like protein of unknown function in nutrient2 uptake (yp_427473.1) from rhodospirillum rubrum atcc 11170 at 1.70 a3 resolution
70c1zeqX_



not modelled 21.5 5
PDB header:metal binding protein
Chain: X: PDB Molecule:cation efflux system protein cusf;
PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli
71c6bjuD_



not modelled 21.0 14
PDB header:unknown function
Chain: D: PDB Molecule:atzh;
PDBTitle: the structure of atzh: a little known member of the atrazine breakdown2 pathway
72c1mwuA_



not modelled 20.9 11
PDB header:biosynthetic protein
Chain: A: PDB Molecule:penicillin-binding protein 2a;
PDBTitle: structure of methicillin acyl-penicillin binding protein 2a from2 methicillin resistant staphylococcus aureus strain 27r at 2.60 a3 resolution.
73c4orlA_



not modelled 20.8 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf4783 family protein (bacova_04304) from2 bacteroides ovatus atcc 8483 at 1.40 a resolution
74c3j6vI_



not modelled 20.1 26
PDB header:ribosome
Chain: I: PDB Molecule:28s ribosomal protein s9, mitochondrial;
PDBTitle: cryo-em structure of the small subunit of the mammalian mitochondrial2 ribosome
75c5ve9C_



not modelled 19.7 38
PDB header:protein binding
Chain: C: PDB Molecule:microtubule-actin cross-linking factor 1, isoforms 1/2/3/5;
PDBTitle: structure of hacf7 ef1-ef2-gar domains
76c4ouqA_



not modelled 19.2 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf4783 family protein (bf1468) from2 bacteroides fragilis ych46 at 1.55 a resolution
77d2bmob1



not modelled 19.2 15
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
78d1vqqa1



not modelled 19.0 13
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Penicillin binding protein 2a (PBP2A), N-terminal domain
79d1ulib_



not modelled 17.2 4
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
80c3hzpA_



not modelled 17.0 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ntf2-like protein of unknown function;
PDBTitle: crystal structure of ntf2-like protein of unknown function mn2a_05052 from prochlorococcus marinus (yp_291699.1) from prochlorococcus sp.3 natl2a at 1.40 a resolution
81c5ts4A_



not modelled 16.9 14
PDB header:de novo protein
Chain: A: PDB Molecule:denovo ntf2;
PDBTitle: crystal structure of a de novo designed protein with curved beta-sheet
82c3efyB_



not modelled 16.2 24
PDB header:cell cycle
Chain: B: PDB Molecule:cif (cell cycle inhibiting factor);
PDBTitle: structure of the cyclomodulin cif from pathogenic2 escherichia coli
83d1v5ra1



not modelled 15.5 33
Fold:N domain of copper amine oxidase-like
Superfamily:GAS2 domain-like
Family:GAS2 domain
84c3rgaA_



not modelled 15.2 15
PDB header:isomerase
Chain: A: PDB Molecule:epoxide hydrolase;
PDBTitle: crystal structure of epoxide hydrolase for polyether lasalocid a2 biosynthesis
85c6f0kA_



not modelled 15.2 21
PDB header:membrane protein
Chain: A: PDB Molecule:cytochrome c family protein;
PDBTitle: alternative complex iii
86d2gxfa1



not modelled 15.1 15
Fold:Cystatin-like
Superfamily:NTF2-like
Family:YybH-like
87c1xofB_



not modelled 13.7 20
PDB header:de novo protein
Chain: B: PDB Molecule:bbahett1;
PDBTitle: heterooligomeric beta beta alpha miniprotein
88c2jnzA_



not modelled 13.5 17
PDB header:allergen
Chain: A: PDB Molecule:phl p 3 allergen;
PDBTitle: solution structure of phl p 3, a major allergen from2 timothy grass pollen
89c2n6uA_



not modelled 11.2 36
PDB header:unknown function
Chain: A: PDB Molecule:astexin2-dc4;
PDBTitle: solution study of astexin2-dc4
90d2h1ta1



not modelled 11.1 13
Fold:Spiral beta-roll
Superfamily:PA1994-like
Family:PA1994-like
91c2l55A_



not modelled 10.8 0
PDB header:metal binding protein
Chain: A: PDB Molecule:silb,silver efflux protein, mfp component of the three
PDBTitle: solution structure of the c-terminal domain of silb from cupriavidus2 metallidurans
92c2lyyB_



not modelled 9.5 10
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: nmr structure of the protein nb7890a from shewanella sp
93d1wqlb1



not modelled 9.2 5
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
94c6hwhX_



not modelled 8.8 14
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
95c3r2cJ_



not modelled 8.7 15
PDB header:transcription/rna
Chain: J: PDB Molecule:30s ribosomal protein s10;
PDBTitle: crystal structure of antitermination factors nusb and nuse in complex2 with boxa rna
96c6k4vA_



not modelled 8.7 50
PDB header:antibiotic
Chain: A: PDB Molecule:smart chimeric peptide g6;
PDBTitle: the solution structure of the smart chimeric peptide g6
97c2ls01_



not modelled 8.5 15
PDB header:hydrolase
Chain: 1: PDB Molecule:zoocin a endopeptidase;
PDB Fragment:unp residues 170-285; PDBTitle: solution structure of the target recognition domain of zoocin a
98d2nt0a1



not modelled 8.0 20
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:Composite domain of glycosyl hydrolase families 5, 30, 39 and 51
99c4d0uD_



not modelled 7.9 50
PDB header:viral protein
Chain: D: PDB Molecule:fiber protein;
PDBTitle: crystal structure of the fiber head domain of the atadenovirus snake2 adenovirus 1, selenomethionine-derivative

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below