Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0179c_(lprO)_209701_210810
DateTue Jul 23 14:50:23 BST 2019
Unique Job ID70daf8aeee71e3ca
SequenceMWIRAERVAV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:48.914 Y:46.417 Z:43.532
Model (left) based on template c3ohgA_
Top template information
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein from duf2233 family;
PDBTitle: crystal structure of a protein with unknown function from duf22332 family (bacova_00430) from bacteroides ovatus at 1.80 a resolution
Confidence and coverage
Confidence: 98.9% Coverage: 47%
174 residues ( 47% of your sequence) have been modelled with 98.9% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3ohgA_
98.9 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein from duf2233 family;
PDBTitle: crystal structure of a protein with unknown function from duf22332 family (bacova_00430) from bacteroides ovatus at 1.80 a resolution
2c5h3kA_
98.3 27
PDB header:unknown function
Chain: A: PDB Molecule:slr0280 protein;
PDBTitle: crystal structure of a hypothetical protein from synechocystis
3c6ozdB_
98.1 29
PDB header:structural genomics
Chain: B: PDB Molecule:putative exported protein;
PDBTitle: crystal structure of putative exported protein (bpss2145) from2 burkholderia pseudomallei k96243
4c4ftdA_
64.9 26
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf4623 family protein (bacegg_03550) from2 bacteroides eggerthii dsm 20697 at 1.91 a resolution
5d1itva_
55.6 18
Fold:4-bladed beta-propeller
Superfamily:Hemopexin-like domain
Family:Hemopexin-like domain
6d1txka2
51.8 39
Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:MdoG-like
7c1txkA_
51.5 39
PDB header:biosynthetic protein
Chain: A: PDB Molecule:glucans biosynthesis protein g;
PDBTitle: crystal structure of escherichia coli opgg
8c3gf8A_
49.5 22
PDB header:carbohydrate binding protein
Chain: A: PDB Molecule:putative polysaccharide binding proteins (duf1812);
PDBTitle: crystal structure of putative polysaccharide binding proteins2 (duf1812) (np_809975.1) from bacteroides thetaiotaomicron vpi-5482 at3 2.20 a resolution
9c3oyoB_
41.3 25
PDB header:plant protein
Chain: B: PDB Molecule:hemopexin fold protein cp4;
PDBTitle: crystal structure of hemopexin fold protein cp4 from cow pea
10d1gtka2
37.1 56
Fold:dsRBD-like
Superfamily:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
Family:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
11d1pdaa2
36.3 44
Fold:dsRBD-like
Superfamily:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
Family:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
12d1pexa_
35.5 22
Fold:4-bladed beta-propeller
Superfamily:Hemopexin-like domain
Family:Hemopexin-like domain
13c2cltB_
33.7 34
PDB header:hydrolase
Chain: B: PDB Molecule:interstitial collagenase;
PDBTitle: crystal structure of the active form (full-length) of human2 fibroblast collagenase.
14c3c7xA_
33.4 28
PDB header:hydrolase
Chain: A: PDB Molecule:matrix metalloproteinase-14;
PDBTitle: hemopexin-like domain of matrix metalloproteinase 14
15c4mlqA_
32.4 21
PDB header:transferase
Chain: A: PDB Molecule:porphobilinogen deaminase;
PDBTitle: crystal structure of bacillus megaterium porphobilinogen deaminase
16d1fbla1
32.2 31
Fold:4-bladed beta-propeller
Superfamily:Hemopexin-like domain
Family:Hemopexin-like domain
17c3lp9C_
28.8 24
PDB header:plant protein
Chain: C: PDB Molecule:ls-24;
PDBTitle: crystal structure of ls24, a seed albumin from lathyrus2 sativus
18d1jg5a_
28.2 28
Fold:GTP cyclohydrolase I feedback regulatory protein, GFRP
Superfamily:GTP cyclohydrolase I feedback regulatory protein, GFRP
Family:GTP cyclohydrolase I feedback regulatory protein, GFRP
19d1xdna_
25.0 32
Fold:ATP-grasp
Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain
Family:RNA ligase
20c1su3A_
23.1 34
PDB header:hydrolase
Chain: A: PDB Molecule:interstitial collagenase;
PDBTitle: x-ray structure of human prommp-1: new insights into2 collagenase action
21c5aeoA_
not modelled 21.6 33
PDB header:immune system
Chain: A: PDB Molecule:r. equi vapg protein;
PDBTitle: virulence-associated protein vapg from the intracellular2 pathogen rhodococcus equi
22c4cv7A_
not modelled 21.6 33
PDB header:toxin
Chain: A: PDB Molecule:virulence associated protein vapb;
PDBTitle: crystal structure of rhodococcus equi vapb
23c4csbA_
not modelled 21.4 30
PDB header:unknown function
Chain: A: PDB Molecule:virulence associated protein vapd;
PDBTitle: structure of the virulence-associated protein vapd from the2 intracellular pathogen rhodococcus equi.
24d1hxna_
not modelled 21.0 19
Fold:4-bladed beta-propeller
Superfamily:Hemopexin-like domain
Family:Hemopexin-like domain
25d1g47a2
not modelled 20.1 32
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
26c3eq1A_
not modelled 19.6 44
PDB header:transferase
Chain: A: PDB Molecule:porphobilinogen deaminase;
PDBTitle: the crystal structure of human porphobilinogen deaminase at2 2.8a resolution
27c2pnyA_
not modelled 19.1 14
PDB header:isomerase
Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 2;
PDBTitle: structure of human isopentenyl-diphosphate delta-isomerase 2
28d1lbua2
not modelled 18.6 23
Fold:Hedgehog/DD-peptidase
Superfamily:Hedgehog/DD-peptidase
Family:Muramoyl-pentapeptide carboxypeptidase
29c2ypnA_
not modelled 18.6 56
PDB header:transferase
Chain: A: PDB Molecule:protein (hydroxymethylbilane synthase);
PDBTitle: hydroxymethylbilane synthase
30c4xfkA_
not modelled 18.5 13
PDB header:transport protein
Chain: A: PDB Molecule:putative branched chain amino acid abc transporter,
PDBTitle: crystal structure of leucine-, isoleucine-, valine-, threonine-, and2 alanine-binding protein from brucella ovis
31c4jxpA_
not modelled 18.0 55
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-l-iduronidase;
PDBTitle: crystal structure of human alpha-l-iduronidase, monoclinic form
32c4q0pA_
not modelled 17.9 31
PDB header:isomerase
Chain: A: PDB Molecule:l-ribose isomerase;
PDBTitle: crystal structure of acinetobacter sp. dl28 l-ribose isomerase in2 complex with l-ribose
33c1gxdA_
not modelled 17.7 23
PDB header:hydrolase
Chain: A: PDB Molecule:72 kda type iv collagenase;
PDBTitle: prommp-2/timp-2 complex
34d1u2ca1
not modelled 17.6 67
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Cadherin-like
Family:Dystroglycan, N-terminal domain
35c4aupA_
not modelled 17.1 44
PDB header:hydrolase
Chain: A: PDB Molecule:phospholipase a2 group xiii;
PDBTitle: tuber borchii phospholipase a2
36c4htgA_
not modelled 16.7 33
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:porphobilinogen deaminase, chloroplastic;
PDBTitle: porphobilinogen deaminase from arabidopsis thaliana
37d1su3a2
not modelled 16.3 34
Fold:4-bladed beta-propeller
Superfamily:Hemopexin-like domain
Family:Hemopexin-like domain
38c5l6mA_
not modelled 14.7 30
PDB header:hydrolase
Chain: A: PDB Molecule:vapb family protein;
PDBTitle: structure of caulobacter crescentus vapbc1 (vapb1deltac:vapc1 form)
39c2zpaB_
not modelled 14.6 23
PDB header:transferase
Chain: B: PDB Molecule:uncharacterized protein ypfi;
PDBTitle: crystal structure of trna(met) cytidine acetyltransferase
40c4g0dD_
not modelled 13.6 22
PDB header:hydrolase
Chain: D: PDB Molecule:collagenase 3;
PDBTitle: human collagenase 3 (mmp-13) full form with peptides from pro-domain
41c3anoA_
not modelled 13.6 38
PDB header:transferase
Chain: A: PDB Molecule:ap-4-a phosphorylase;
PDBTitle: crystal structure of a novel diadenosine 5',5'''-p1,p4-tetraphosphate2 phosphorylase from mycobacterium tuberculosis h37rv
42c2y9zB_
not modelled 13.1 27
PDB header:transcription
Chain: B: PDB Molecule:iswi one complex protein 3;
PDBTitle: chromatin remodeling factor isw1a(del_atpase) in dna complex
43c3ba0A_
not modelled 12.9 24
PDB header:hydrolase
Chain: A: PDB Molecule:macrophage metalloelastase;
PDBTitle: crystal structure of full-length human mmp-12
44c5nwmB_
not modelled 12.5 50
PDB header:signaling protein
Chain: B: PDB Molecule:signal transducer and activator of transcription 6;
PDBTitle: insight into the molecular recognition mechanism of the coactivator2 ncoa1 by stat6
45c6imfB_
not modelled 12.4 18
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:small serum protein 2;
PDBTitle: crystal structure of toxin/antitoxin complex
46c4yycA_
not modelled 12.1 19
PDB header:transferase
Chain: A: PDB Molecule:putative trimethylamine methyltransferase;
PDBTitle: crystal structure of trimethylamine methyltransferase from2 sinorhizobium meliloti in complex with unknown ligand
47c4mi7A_
not modelled 11.9 40
PDB header:hydrolase, toxin
Chain: A: PDB Molecule:bacteriophage encoded virulence factor;
PDBTitle: crystal structure of salmonella effector protein gtge
48d1cmra_
not modelled 11.8 54
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Scorpion toxin-like
Family:Short-chain scorpion toxins
49c3mlhA_
not modelled 11.7 24
PDB header:viral protein
Chain: A: PDB Molecule:hemagglutinin;
PDBTitle: crystal structure of the 2009 h1n1 influenza virus hemagglutinin2 receptor-binding domain
50c2cisA_
not modelled 11.6 23
PDB header:isomerase
Chain: A: PDB Molecule:glucose-6-phosphate 1-epimerase;
PDBTitle: structure-based functional annotation: yeast ymr099c codes for a d-2 hexose-6-phosphate mutarotase. complex with tagatose-6-phosphate
51c5ax7A_
not modelled 11.1 22
PDB header:transferase
Chain: A: PDB Molecule:pyruvyl transferase 1;
PDBTitle: yeast pyruvyltransferase pvg1p
52c2ec5B_
not modelled 10.7 32
PDB header:toxin
Chain: B: PDB Molecule:dermonecrotic toxin;
PDBTitle: crystal structures reveal a thiol-protease like catalytic triad in the2 c-terminal region of pasteurella multocida toxin
53c3wdkA_
not modelled 10.6 26
PDB header:ligase
Chain: A: PDB Molecule:4-phosphopantoate--beta-alanine ligase;
PDBTitle: crystal structure of 4-phosphopantoate-beta-alanine ligase complexed2 with reaction intermediate
54c3payB_
not modelled 10.3 20
PDB header:cell adhesion
Chain: B: PDB Molecule:putative adhesin;
PDBTitle: crystal structure of a putative adhesin (bacova_04077) from2 bacteroides ovatus at 2.50 a resolution
55c1fpvA_
not modelled 10.3 14
PDB header:virus
Chain: A: PDB Molecule:feline panleukopenia virus (strain b) viral
PDBTitle: structure determination of feline panleukopenia virus empty2 particles
56c2iz4A_
not modelled 9.7 11
PDB header:inhibitor
Chain: A: PDB Molecule:beta-microseminoprotein;
PDBTitle: solution structure of human and porcine beta-2 microseminoprotein
57d1wk1a_
not modelled 9.4 13
Fold:C-type lectin-like
Superfamily:C-type lectin-like
Family:C-type lectin domain
58d1w91a1
not modelled 9.4 45
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:Composite domain of glycosyl hydrolase families 5, 30, 39 and 51
59c2qnkA_
not modelled 9.4 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:3-hydroxyanthranilate 3,4-dioxygenase;
PDBTitle: crystal structure of human 3-hydroxyanthranilate 3,4-dioxygenase
60c4bluB_
not modelled 9.3 33
PDB header:transferase
Chain: B: PDB Molecule:ribosomal rna large subunit methyltransferase j;
PDBTitle: crystal structure of escherichia coli 23s rrna (a2030-n6)-2 methyltransferase rlmj
61c2jxyA_
not modelled 9.2 19
PDB header:hydrolase
Chain: A: PDB Molecule:macrophage metalloelastase;
PDBTitle: solution structure of the hemopexin-like domain of mmp12
62d1gvia2
not modelled 9.2 60
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
63d2viua_
not modelled 9.2 29
Fold:Viral protein domain
Superfamily:Viral protein domain
Family:Influenza hemagglutinin headpiece
64c2i6kA_
not modelled 9.0 14
PDB header:isomerase
Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 1;
PDBTitle: crystal structure of human type i ipp isomerase complexed with a2 substrate analog
65c4eogA_
not modelled 8.9 38
PDB header:dna binding protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of csx1 of pyrococcus furiosus
66c3islA_
not modelled 8.9 20
PDB header:transferase
Chain: A: PDB Molecule:purine catabolism protein pucg;
PDBTitle: crystal structure of ureidoglycine-glyoxylate aminotransferase (pucg)2 from bacillus subtilis
67d1mqma_
not modelled 8.7 24
Fold:Viral protein domain
Superfamily:Viral protein domain
Family:Influenza hemagglutinin headpiece
68c2gaaA_
not modelled 8.7 38
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical 39.9 kda protein;
PDBTitle: crystal structure of yfh7 from saccharomyces cerevisiae: a2 putative p-loop containing kinase with a circular3 permutation.
69c2hb5A_
not modelled 8.6 20
PDB header:hydrolase
Chain: A: PDB Molecule:reverse transcriptase/ribonuclease h;
PDBTitle: crystal structure of the moloney murine leukemia virus rnase h domain
70c1hupA_
not modelled 8.5 10
PDB header:c-type lectin
Chain: A: PDB Molecule:mannose-binding protein;
PDBTitle: human mannose binding protein carbohydrate recognition domain2 trimerizes through a triple alpha-helical coiled-coil
71d2visc_
not modelled 8.4 30
Fold:Viral protein domain
Superfamily:Viral protein domain
Family:Influenza hemagglutinin headpiece
72c2o0tB_
not modelled 8.3 22
PDB header:lyase
Chain: B: PDB Molecule:diaminopimelate decarboxylase;
PDBTitle: the three dimensional structure of diaminopimelate decarboxylase from2 mycobacterium tuberculosis reveals a tetrameric enzyme organisation
73c3zvkG_
not modelled 8.3 20
PDB header:antitoxin/toxin/dna
Chain: G: PDB Molecule:antitoxin of toxin-antitoxin system vapb;
PDBTitle: crystal structure of vapbc2 from rickettsia felis bound to2 a dna fragment from their promoter
74c4y90B_
not modelled 8.2 26
PDB header:isomerase
Chain: B: PDB Molecule:triosephosphate isomerase;
PDBTitle: crystal structure of triosephosphate isomerase from deinococcus2 radiodurans
75c3fcsA_
not modelled 8.2 20
PDB header:cell adhesion/blood clotting
Chain: A: PDB Molecule:integrin, alpha 2b;
PDBTitle: structure of complete ectodomain of integrin aiibb3
76c2ww9O_
not modelled 8.1 57
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l39;
PDBTitle: cryo-em structure of the active yeast ssh1 complex bound to the yeast2 80s ribosome
77c4f15D_
not modelled 8.1 24
PDB header:immune system
Chain: D: PDB Molecule:hemagglutinin;
PDBTitle: molecular basis of infectivity of 2009 pandemic h1n1 influenza a2 viruses
78d1otga_
not modelled 8.1 20
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:5-carboxymethyl-2-hydroxymuconate isomerase (CHMI)
79c1q14A_
not modelled 8.0 14
PDB header:hydrolase
Chain: A: PDB Molecule:hst2 protein;
PDBTitle: structure and autoregulation of the yeast hst2 homolog of sir2
80c2mcwA_
not modelled 7.8 50
PDB header:antimicrobial protein
Chain: A: PDB Molecule:piscidin-3;
PDBTitle: solid-state nmr structure of piscidin 3 in aligned 3:12 phosphatidylcholine/phosphoglycerol lipid bilayers
81c2mcxA_
not modelled 7.8 50
PDB header:antimicrobial protein
Chain: A: PDB Molecule:piscidin-3;
PDBTitle: solid-state nmr structure of piscidin 3 in aligned 1:12 phosphatidylethanolamine/phosphoglycerol lipid bilayers
82d2ebfx2
not modelled 7.7 38
Fold:EreA/ChaN-like
Superfamily:EreA/ChaN-like
Family:PMT domain-like
83d1czsa_
not modelled 7.7 75
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain)
84c5f5wC_
not modelled 7.7 20
PDB header:ligase
Chain: C: PDB Molecule:glycine--trna ligase alpha subunit;
PDBTitle: crystal structure of the alpha subunit of glycyl trna synthetase2 (glyrs) from aquifex aeolicus in complex with an analog of glycyl3 adenylate (gly-sa)
85d1dl5a2
not modelled 7.6 50
Fold:Protein-L-isoaspartyl O-methyltransferase, C-terminal domain
Superfamily:Protein-L-isoaspartyl O-methyltransferase, C-terminal domain
Family:Protein-L-isoaspartyl O-methyltransferase, C-terminal domain
86d1ti8a1
not modelled 7.6 29
Fold:Viral protein domain
Superfamily:Viral protein domain
Family:Influenza hemagglutinin headpiece
87c4jpqA_
not modelled 7.5 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative carbohydrate-binding protein2 (bacuni_03838) from bacteroides uniformis atcc 8492 at 2.70 a3 resolution
88c3trkA_
not modelled 7.4 50
PDB header:hydrolase
Chain: A: PDB Molecule:nonstructural polyprotein;
PDBTitle: structure of the chikungunya virus nsp2 protease
89c4cyzC_
not modelled 7.4 35
PDB header:viral protein
Chain: C: PDB Molecule:hemagglutinin;
PDBTitle: structure of the a_mallard_sweden_51_2002 h10 avian2 haemmaglutinin in complex with avian receptor analog lsta
90d1rd8a_
not modelled 7.4 24
Fold:Viral protein domain
Superfamily:Viral protein domain
Family:Influenza hemagglutinin headpiece
91c5nfiB_
not modelled 7.3 15
PDB header:cell adhesion
Chain: B: PDB Molecule:minor fimbrium anchoring subunit mfa2;
PDBTitle: the fimbrial anchor protein mfa2 from porphyromonas gingivalis
92c2qrvC_
not modelled 7.3 20
PDB header:transferase/transferase regulator
Chain: C: PDB Molecule:dna (cytosine-5)-methyltransferase 3-like;
PDBTitle: structure of dnmt3a-dnmt3l c-terminal domain complex
93c5zdoA_
not modelled 7.3 19
PDB header:ligase
Chain: A: PDB Molecule:glutamine-trna ligase;
PDBTitle: crystal structure analysis of ttqrs in co-crystallised with atp
94d1gena_
not modelled 7.2 33
Fold:4-bladed beta-propeller
Superfamily:Hemopexin-like domain
Family:Hemopexin-like domain
95d2gfva1
not modelled 7.1 58
Fold:Thiolase-like
Superfamily:Thiolase-like
Family:Thiolase-related
96c3k6sC_
not modelled 7.0 20
PDB header:cell adhesion
Chain: C: PDB Molecule:integrin alpha-x;
PDBTitle: structure of integrin alphaxbeta2 ectodomain
97c2btwA_
not modelled 7.0 22
PDB header:transferase
Chain: A: PDB Molecule:alr0975 protein;
PDBTitle: crystal structure of alr0975
98c4mxeA_
not modelled 6.9 58
PDB header:transferase
Chain: A: PDB Molecule:n-acetyltransferase esco1;
PDBTitle: human esco1 (eco1/ctf7 ortholog), acetyltransferase domain in complex2 with acetyl-coa
99c2ijzF_
not modelled 6.9 34
PDB header:hydrolase
Chain: F: PDB Molecule:probable m18-family aminopeptidase 2;
PDBTitle: crystal structure of aminopeptidase

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