Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0184_(-)_214967_215716
DateTue Jul 23 14:50:23 BST 2019
Unique Job ID8dc74d809b496403
SequenceMTNDKMLARI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:18.604 Y:48.376 Z:43.233
Model (left) based on template c1urqA_
Top template information
PDB header:transport protein
Chain: A: PDB Molecule:m-tomosyn isoform;
PDBTitle: crystal structure of neuronal q-snares in complex with r-snare motif2 of tomosyn
Confidence and coverage
Confidence: 63.1% Coverage: 16%
39 residues ( 16% of your sequence) have been modelled with 63.1% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1urqA_



63.1 21
PDB header:transport protein
Chain: A: PDB Molecule:m-tomosyn isoform;
PDBTitle: crystal structure of neuronal q-snares in complex with r-snare motif2 of tomosyn
2c2jvdA_



51.1 26
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0291 protein ynzc;
PDBTitle: solution nmr structure of the folded n-terminal fragment of2 upf0291 protein ynzc from bacillus subtilis. northeast3 structural genomics target sr384-1-46
3c3rzaA_



42.6 15
PDB header:hydrolase
Chain: A: PDB Molecule:tripeptidase;
PDBTitle: crystal structure of a tripeptidase (sav1512) from staphylococcus2 aureus subsp. aureus mu50 at 2.10 a resolution
4c2kpjA_



40.8 8
PDB header:transcription regulator
Chain: A: PDB Molecule:sos-response transcriptional repressor, lexa;
PDBTitle: solution structure of protein sos-response transcriptional2 repressor, lexa from eubacterium rectale. northeast3 structural genomics consortium target err9a
5c6mdvA_



36.8 15
PDB header:hydrolase
Chain: A: PDB Molecule:endo-beta-n-acetylglucosaminidase;
PDBTitle: crystal structure of streptococcus pyogenes endo-beta-n-2 acetylglucosaminidase (endos2) with high-mannose glycan
6c6mx1A_



31.4 9
PDB header:transferase, hydrolase
Chain: A: PDB Molecule:bifunctional aspartokinase/homoserine dehydrogenase 1;
PDBTitle: the crystal structure of the regulatory domain of aspartokinase in the2 bifunctional aspartokinase/homoserine dehydrogenase 1 from3 escherichia coli str. k-12 substr. mg1655
7c3wo6A_



27.3 8
PDB header:membrane protein
Chain: A: PDB Molecule:membrane protein insertase yidc 2;
PDBTitle: crystal structure of yidc from bacillus halodurans (form i)
8d1wj7a1



27.2 11
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
9c2jowA_



26.8 22
PDB header:transport protein
Chain: A: PDB Molecule:protein prgi;
PDBTitle: differences in the electrostatic surfaces of the type iii2 secretion needle proteins
10c3zhiA_



25.8 7
PDB header:transcription
Chain: A: PDB Molecule:ci;
PDBTitle: n-terminal domain of the ci repressor from bacteriophage tp901-1
11c3w0lD_



24.9 15
PDB header:transferase/transferase inhibitor
Chain: D: PDB Molecule:glucokinase regulatory protein;
PDBTitle: the crystal structure of xenopus glucokinase and glucokinase2 regulatory protein complex
12d1vixa1



24.8 19
Fold:Phosphorylase/hydrolase-like
Superfamily:Zn-dependent exopeptidases
Family:Bacterial dinuclear zinc exopeptidases
13c3rvaA_



24.0 13
PDB header:hydrolase
Chain: A: PDB Molecule:organophosphorus acid anhydrolase;
PDBTitle: crystal structure of organophosphorus acid anhydrolase from2 alteromonas macleodii
14c4wzsA_



23.7 12
PDB header:transcription
Chain: A: PDB Molecule:ecu11_1470 protein;
PDBTitle: crystal structure of the mot1 n-terminal domain in complex with tbp2 and nc2 bound to a promoter dna fragment
15c2v6lI_



21.2 21
PDB header:protein transport
Chain: I: PDB Molecule:mxih;
PDBTitle: molecular model of a type iii secretion system needle
16c3epyA_



20.1 29
PDB header:lipid binding protein
Chain: A: PDB Molecule:acyl-coa-binding domain-containing protein 7;
PDBTitle: crystal structure of human acyl-coa binding domain 7 complexed with2 palmitoyl-coa
17d2g0ua1



19.3 11
Fold:Long alpha-hairpin
Superfamily:MxiH-like
Family:MxiH-like
18c3t76A_



19.2 14
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator vanug;
PDBTitle: crystal structure of transcriptional regulator vanug, form ii
19d2ca5a1



18.8 22
Fold:Long alpha-hairpin
Superfamily:MxiH-like
Family:MxiH-like
20c5cnxB_



18.3 13
PDB header:hydrolase
Chain: B: PDB Molecule:aminopeptidase ypdf;
PDBTitle: crystal structure of xaa-pro aminopeptidase from escherichia coli k12
21c5ks5A_



not modelled 17.5 27
PDB header:transferase
Chain: A: PDB Molecule:eukaryotic elongation factor 2 kinase;
PDBTitle: structure of the c-terminal helical repeat domain of elongation factor2 2 kinase
22c2re1A_



not modelled 17.4 12
PDB header:transferase
Chain: A: PDB Molecule:aspartokinase, alpha and beta subunits;
PDBTitle: crystal structure of aspartokinase alpha and beta subunits
23c3b7hA_



not modelled 17.3 8
PDB header:structural protein
Chain: A: PDB Molecule:prophage lp1 protein 11;
PDBTitle: crystal structure of the prophage lp1 protein 11
24c4lc9A_



not modelled 17.1 25
PDB header:transferase/transferase regulator
Chain: A: PDB Molecule:glucokinase regulatory protein;
PDBTitle: structural basis for regulation of human glucokinase by glucokinase2 regulatory protein
25c2w48D_



not modelled 16.8 20
PDB header:transcription
Chain: D: PDB Molecule:sorbitol operon regulator;
PDBTitle: crystal structure of the full-length sorbitol operon2 regulator sorc from klebsiella pneumoniae
26c2rreA_



not modelled 16.3 21
PDB header:nuclear protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure and function of the n-terminal nucleolin binding domain of2 nuclear valocine containing protein like 2 (nvl2) harboring a3 nucleolar localization signal
27c2hepA_



not modelled 16.2 28
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0291 protein ynzc;
PDBTitle: solution nmr structure of the upf0291 protein ynzc from2 bacillus subtilis. northeast structural genomics target3 sr384.
28d2hepa1



not modelled 16.2 28
Fold:Long alpha-hairpin
Superfamily:YnzC-like
Family:YznC-like
29d1chma1



not modelled 16.2 19
Fold:Ribonuclease H-like motif
Superfamily:Creatinase/prolidase N-terminal domain
Family:Creatinase/prolidase N-terminal domain
30c3lisB_



not modelled 16.0 14
PDB header:transcription
Chain: B: PDB Molecule:csp231i c protein;
PDBTitle: crystal structure of the restriction-modification controller protein2 c.csp231i (monoclinic form)
31c3ovkD_



not modelled 15.9 4
PDB header:hydrolase
Chain: D: PDB Molecule:aminopeptidase p, xaa-pro dipeptidase;
PDBTitle: crystal structure of an xxa-pro aminopeptidase from streptococcus2 pyogenes
32d1hb6a_



not modelled 15.8 19
Fold:Acyl-CoA binding protein-like
Superfamily:Acyl-CoA binding protein
Family:Acyl-CoA binding protein
33c3oooA_



not modelled 15.8 14
PDB header:hydrolase
Chain: A: PDB Molecule:proline dipeptidase;
PDBTitle: the structure of a proline dipeptidase from streptococcus agalactiae2 2603v
34c3qbwA_



not modelled 15.1 18
PDB header:transferase
Chain: A: PDB Molecule:anhydro-n-acetylmuramic acid kinase;
PDBTitle: crystal structure of pseudomonas aeruginosa 1,6-anhydro-n-2 actetylmuramic acid kinase (anmk) bound to adenosine diphosphate
35c3gb0A_



not modelled 15.1 9
PDB header:hydrolase
Chain: A: PDB Molecule:peptidase t;
PDBTitle: crystal structure of aminopeptidase pept (np_980509.1) from bacillus2 cereus atcc 10987 at 2.04 a resolution
36c1wy2B_



not modelled 15.1 14
PDB header:hydrolase
Chain: B: PDB Molecule:xaa-pro dipeptidase;
PDBTitle: crystal structure of the prolidase from pyrococcus horikoshii ot3
37c1u9gB_



not modelled 15.0 55
PDB header:transcription
Chain: B: PDB Molecule:general control protein gcn4;
PDBTitle: heterocyclic peptide backbone modification in gcn4-pli based coiled2 coils: replacement of k(8)l(9)
38c3pn9C_



not modelled 14.8 14
PDB header:hydrolase
Chain: C: PDB Molecule:proline dipeptidase;
PDBTitle: crystal structure of a proline dipeptidase from streptococcus2 pneumoniae tigr4
39c1unvA_



not modelled 14.7 55
PDB header:four helix bundle
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: structure based engineering of internal molecular surfaces of four2 helix bundles
40c2ag3A_



not modelled 14.7 55
PDB header:de novo protein
Chain: A: PDB Molecule:gcn4-pli;
PDBTitle: heterocyclic peptide backbone modification in gcn4-pli based coiled2 coils: substitution of the k(15)-l(16) amide with a triazole
41c4g92C_



not modelled 14.6 18
PDB header:transcription/dna
Chain: C: PDB Molecule:hape;
PDBTitle: ccaat-binding complex from aspergillus nidulans with dna
42c1unvB_



not modelled 14.6 55
PDB header:four helix bundle
Chain: B: PDB Molecule:general control protein gcn4;
PDBTitle: structure based engineering of internal molecular surfaces of four2 helix bundles
43c2kwlA_



not modelled 13.9 20
PDB header:lipid binding protein
Chain: A: PDB Molecule:acyl carrier protein;
PDBTitle: solution structure of acyl carrier protein from borrelia burgdorferi
44c2rb7A_



not modelled 13.8 10
PDB header:hydrolase
Chain: A: PDB Molecule:peptidase, m20/m25/m40 family;
PDBTitle: crystal structure of co-catalytic metallopeptidase (yp_387682.1) from2 desulfovibrio desulfuricans g20 at 1.60 a resolution
45c4hmcA_



not modelled 13.8 20
PDB header:hydrolase
Chain: A: PDB Molecule:chitinase 60;
PDBTitle: crystal structure of cold-adapted chitinase from moritella marina
46c4bbaA_



not modelled 13.1 26
PDB header:protein-binding protein
Chain: A: PDB Molecule:glucokinase regulatory protein;
PDBTitle: crystal structure of glucokinase regulatory protein complexed to2 phosphate
47c4hjdA_



not modelled 12.8 75
PDB header:unknown function
Chain: A: PDB Molecule:gcn4pli(alpha/beta/acyclic gamma);
PDBTitle: gcn4pli derivative with alpha/beta/acyclic-gamma amino acid2 substitution pattern
48c4hjdB_



not modelled 12.8 75
PDB header:unknown function
Chain: B: PDB Molecule:gcn4pli(alpha/beta/acyclic gamma);
PDBTitle: gcn4pli derivative with alpha/beta/acyclic-gamma amino acid2 substitution pattern
49c6dmaD_



not modelled 12.6 50
PDB header:de novo protein
Chain: D: PDB Molecule:dhd15_closed_b;
PDBTitle: dhd15_closed
50c5dowB_



not modelled 12.6 44
PDB header:calcium binding protein
Chain: B: PDB Molecule:chloride anion exchanger;
PDBTitle: solution of the variably-twinned structure of a novel calmodulin-2 peptide complex in a novel configuration
51c4aflA_



not modelled 12.5 6
PDB header:cell cycle
Chain: A: PDB Molecule:inhibitor of growth protein 4;
PDBTitle: the crystal structure of the ing4 dimerization domain2 reveals the functional organization of the ing family of3 chromatin binding proteins.
52c5dowH_



not modelled 12.4 44
PDB header:calcium binding protein
Chain: H: PDB Molecule:chloride anion exchanger;
PDBTitle: solution of the variably-twinned structure of a novel calmodulin-2 peptide complex in a novel configuration
53c5dowF_



not modelled 12.4 44
PDB header:calcium binding protein
Chain: F: PDB Molecule:chloride anion exchanger;
PDBTitle: solution of the variably-twinned structure of a novel calmodulin-2 peptide complex in a novel configuration
54d2f2ab1



not modelled 11.9 6
Fold:GatB/YqeY motif
Superfamily:GatB/YqeY motif
Family:GatB/GatE C-terminal domain-like
55c3s1tB_



not modelled 11.6 10
PDB header:transferase
Chain: B: PDB Molecule:aspartokinase;
PDBTitle: structure of the regulatory domain of aspartokinase (rv3709c; ak-beta)2 in complex with threonine from mycobacterium tuberculosis
56c5dowD_



not modelled 11.4 44
PDB header:calcium binding protein
Chain: D: PDB Molecule:chloride anion exchanger;
PDBTitle: solution of the variably-twinned structure of a novel calmodulin-2 peptide complex in a novel configuration
57d1whra_



not modelled 11.0 15
Fold:IF3-like
Superfamily:R3H domain
Family:R3H domain
58c1xofB_



not modelled 10.8 40
PDB header:de novo protein
Chain: B: PDB Molecule:bbahett1;
PDBTitle: heterooligomeric beta beta alpha miniprotein
59c5ds0F_



not modelled 10.7 13
PDB header:hydrolase
Chain: F: PDB Molecule:peptidase m42;
PDBTitle: crystal structure of tet aminopeptidase from marine sediment archaeon2 thaumarchaeota archaeon scgc ab-539-e09
60c6d02E_



not modelled 10.5 32
PDB header:de novo protein
Chain: E: PDB Molecule:alpha-amyloid peptide alphaaml;
PDBTitle: cross-alpha amyloid-like structure alphaaml, 2nd form
61c6d02K_



not modelled 10.5 32
PDB header:de novo protein
Chain: K: PDB Molecule:alpha-amyloid peptide alphaaml;
PDBTitle: cross-alpha amyloid-like structure alphaaml, 2nd form
62c6d02Z_



not modelled 10.5 32
PDB header:de novo protein
Chain: Z: PDB Molecule:
PDBTitle: cross-alpha amyloid-like structure alphaaml, 2nd form
63c6d02J_



not modelled 10.5 32
PDB header:de novo protein
Chain: J: PDB Molecule:alpha-amyloid peptide alphaaml;
PDBTitle: cross-alpha amyloid-like structure alphaaml, 2nd form
64c6d02d_



not modelled 10.5 32
PDB header:de novo protein
Chain: D: PDB Molecule:alpha-amyloid peptide alphaaml;
PDBTitle: cross-alpha amyloid-like structure alphaaml, 2nd form
65c6d02A_



not modelled 10.5 32
PDB header:de novo protein
Chain: A: PDB Molecule:alpha-amyloid peptide alphaaml;
PDBTitle: cross-alpha amyloid-like structure alphaaml, 2nd form
66c6d02Q_



not modelled 10.5 32
PDB header:de novo protein
Chain: Q: PDB Molecule:alpha-amyloid peptide alphaaml;
PDBTitle: cross-alpha amyloid-like structure alphaaml, 2nd form
67c6d02O_



not modelled 10.5 32
PDB header:de novo protein
Chain: O: PDB Molecule:alpha-amyloid peptide alphaaml;
PDBTitle: cross-alpha amyloid-like structure alphaaml, 2nd form
68c6c51B_



not modelled 10.5 32
PDB header:de novo protein
Chain: B: PDB Molecule:cross-alpha amyloid-like structure alphaaml;
PDBTitle: cross-alpha amyloid-like structure alphaaml
69c6c51A_



not modelled 10.5 32
PDB header:de novo protein
Chain: A: PDB Molecule:cross-alpha amyloid-like structure alphaaml;
PDBTitle: cross-alpha amyloid-like structure alphaaml
70c6c51C_



not modelled 10.5 32
PDB header:de novo protein
Chain: C: PDB Molecule:cross-alpha amyloid-like structure alphaaml;
PDBTitle: cross-alpha amyloid-like structure alphaaml
71c6d02T_



not modelled 10.5 32
PDB header:de novo protein
Chain: T: PDB Molecule:alpha-amyloid peptide alphaaml;
PDBTitle: cross-alpha amyloid-like structure alphaaml, 2nd form
72c6d02F_



not modelled 10.5 32
PDB header:de novo protein
Chain: F: PDB Molecule:alpha-amyloid peptide alphaaml;
PDBTitle: cross-alpha amyloid-like structure alphaaml, 2nd form
73c6d02R_



not modelled 10.5 32
PDB header:de novo protein
Chain: R: PDB Molecule:alpha-amyloid peptide alphaaml;
PDBTitle: cross-alpha amyloid-like structure alphaaml, 2nd form
74c6d02M_



not modelled 10.5 32
PDB header:de novo protein
Chain: M: PDB Molecule:alpha-amyloid peptide alphaaml;
PDBTitle: cross-alpha amyloid-like structure alphaaml, 2nd form
75c5kp8B_



not modelled 10.5 27
PDB header:transferase
Chain: B: PDB Molecule:curb;
PDBTitle: crystal structure of the curacin biosynthetic pathway hmg synthase in2 complex with acetyl donor-acp
76d1hioa_



not modelled 10.4 21
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
77c4er9A_



not modelled 10.0 22
PDB header:electron transport
Chain: A: PDB Molecule:soluble cytochrome b562;
PDBTitle: crystal structure of cytochrome b562 from salmonella enterica subsp.2 enterica serovar typhimurium str. 14028s
78d3dtoa1



not modelled 9.8 11
Fold:HD-domain/PDEase-like
Superfamily:HD-domain/PDEase-like
Family:HD domain
79c2lolA_



not modelled 9.7 20
PDB header:lipid transport
Chain: A: PDB Molecule:acyl carrier protein;
PDBTitle: nmr structure of an acyl-carrier protein from rickettsia prowazekii,2 seattle structural genomics center for infectious disease (ssgcid)
80c2q7cC_



not modelled 9.6 38
PDB header:viral protein
Chain: C: PDB Molecule:fusion protein between yeast variant gcn4 and hivgp41;
PDBTitle: crystal structure of iqn17
81c6c0dA_



not modelled 9.5 16
PDB header:hydrolase
Chain: A: PDB Molecule:amidase, hydantoinase/carbamoylase family;
PDBTitle: crystal structure of an amidase (hydantoinase/carbamoylase family)2 from burkholderia phymatum
82c5xevA_



not modelled 9.5 17
PDB header:hydrolase
Chain: A: PDB Molecule:xaa-pro dipeptidase,peptidase-related protein;
PDBTitle: crystal structure of a novel xaa-pro dipeptidase from deinococcus2 radiodurans
83c1jfiA_



not modelled 9.3 21
PDB header:transcription/dna
Chain: A: PDB Molecule:transcription regulator nc2 alpha chain;
PDBTitle: crystal structure of the nc2-tbp-dna ternary complex
84d1jfia_



not modelled 9.3 21
Fold:Histone-fold
Superfamily:Histone-fold
Family:TBP-associated factors, TAFs
85c2zhoB_



not modelled 9.2 6
PDB header:transferase
Chain: B: PDB Molecule:aspartokinase;
PDBTitle: crystal structure of the regulatory subunit of aspartate2 kinase from thermus thermophilus (ligand free form)
86d1w36c2



not modelled 9.2 17
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
87c4go1A_



not modelled 9.1 9
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator lsrr;
PDBTitle: crystal structure of full length transcription repressor lsrr from e.2 coli.
88c3il0B_



not modelled 9.0 7
PDB header:hydrolase
Chain: B: PDB Molecule:aminopeptidase p; xaa-pro aminopeptidase;
PDBTitle: the crystal structure of the aminopeptidase p,xaa-pro aminopeptidase2 from streptococcus thermophilus
89d1jcna4



not modelled 9.0 9
Fold:CBS-domain pair
Superfamily:CBS-domain pair
Family:CBS-domain pair
90c4o8bA_



not modelled 9.0 9
PDB header:dna binding protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of transcriptional regulator bswr
91c1vixA_



not modelled 8.8 17
PDB header:hydrolase
Chain: A: PDB Molecule:peptidase t;
PDBTitle: crystal structure of a putative peptidase t
92c4l3uA_



not modelled 8.7 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf3571 family protein (abaye3784) from2 acinetobacter baumannii aye at 1.95 a resolution
93d1sbpa_



not modelled 8.7 21
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
94d2ctfa1



not modelled 8.7 13
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
95c3pohA_



not modelled 8.7 15
PDB header:hydrolase
Chain: A: PDB Molecule:endo-beta-n-acetylglucosaminidase f1;
PDBTitle: crystal structure of an endo-beta-n-acetylglucosaminidase (bt_3987)2 from bacteroides thetaiotaomicron vpi-5482 at 1.55 a resolution
96d256ba_



not modelled 8.5 22
Fold:Four-helical up-and-down bundle
Superfamily:Cytochromes
Family:Cytochrome b562
97d2cyua1



not modelled 8.5 17
Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
98c1u9gA_



not modelled 8.4 55
PDB header:transcription
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: heterocyclic peptide backbone modification in gcn4-pli based coiled2 coils: replacement of k(8)l(9)
99c5icqA_



not modelled 8.4 6
PDB header:periplasmic binding protein
Chain: A: PDB Molecule:methylocystis parvus obbp mbne;
PDBTitle: methanobactin periplasmic binding protein

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