Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0193c_(-)_224722_226569
DateTue Jul 23 14:50:24 BST 2019
Unique Job IDc4af6eedca89a72a
SequenceVIQISRDMSS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:52.019 Y:54.238 Z:53.329
Model (left) based on template c5erlD_
Top template information
PDB header:isomerase
Chain: D: PDB Molecule:snon,snon;
PDBTitle: crystal structure of the epimerase snon in complex with ni2+,2 succinate and nogalamycin ro
Confidence and coverage
Confidence: 98.8% Coverage: 39%
242 residues ( 39% of your sequence) have been modelled with 98.8% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5erlD_
98.8 19
PDB header:isomerase
Chain: D: PDB Molecule:snon,snon;
PDBTitle: crystal structure of the epimerase snon in complex with ni2+,2 succinate and nogalamycin ro
2c5ncjB_
98.6 10
PDB header:oxidoreductase
Chain: B: PDB Molecule:leucine hydroxylase;
PDBTitle: grie in complex with manganese, succinate and (2s,4r)-5-hydroxyleucine
3c4naoA_
97.8 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative oxygenase;
PDBTitle: crystal structure of eash
4c5m0tA_
97.7 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:alpha-ketoglutarate-dependent non-heme iron oxygenase eash;
PDBTitle: alpha-ketoglutarate-dependent non-heme iron oxygenase eash
5c5epaE_
97.6 18
PDB header:lyase
Chain: E: PDB Molecule:snok;
PDBTitle: crystal structure of non-heme alpha ketoglutarate dependent2 carbocyclase snok from nogalamycin biosynthesis
6c4mhuB_
97.6 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:ectoine hydroxylase;
PDBTitle: crystal structure of ectd from s. alaskensis with bound fe
7c5yboA_
97.6 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:prha;
PDBTitle: fe(ii)/(alpha)ketoglutarate-dependent dioxygenase prha in complex with2 preaustinoid a1
8c3emrA_
97.5 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:ectd;
PDBTitle: crystal structure analysis of the ectoine hydroxylase ectd from2 salibacillus salexigens
9c4zonB_
97.5 19
PDB header:oxidoreductase/oxidoreductase inhibitor
Chain: B: PDB Molecule:verruculogen synthase;
PDBTitle: structure of ftmox1 with fumitremorgen b complex
10c2opwA_
97.4 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:phyhd1 protein;
PDBTitle: crystal structure of human phytanoyl-coa dioxygenase phyhd1 (apo)
11c6ec3C_
97.3 21
PDB header:transferase, oxidoreductase
Chain: C: PDB Molecule:methyltransferase domain-containing protein;
PDBTitle: crystal structure of evdmo1
12c4xc9B_
97.2 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:oxidase/hydroxylase;
PDBTitle: crystal structure of apo hygx from streptomyces hygroscopicus
13d2a1xa1
97.2 16
Fold:Double-stranded beta-helix
Superfamily:Clavaminate synthase-like
Family:PhyH-like
14c2rdsA_
97.2 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:1-deoxypentalenic acid 11-beta hydroxylase; fe(ii)/alpha-
PDBTitle: crystal structure of ptlh with fe/oxalylglycine and ent-1-2 deoxypentalenic acid bound
15c5zm4B_
97.1 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:dioxygenase anda;
PDBTitle: fe(ii)/(alpha)ketoglutarate-dependent dioxygenase anda with2 preandiloid c
16c4xabA_
97.0 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:evdo2;
PDBTitle: crystal structure of evdo2 from micromonospora carbonacea var.2 aurantiaca
17c5daqA_
97.0 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:phytanoyl-coa dioxygenase family protein (afu_orthologue
PDBTitle: fe(ii)/(alpha)ketoglutarate-dependent dioxygenase asqj in complex with2 4-methoxycyclopeptin
18c3gjbA_
97.0 10
PDB header:biosynthetic protein
Chain: A: PDB Molecule:cytc3;
PDBTitle: cytc3 with fe(ii) and alpha-ketoglutarate
19c4xaaA_
97.0 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative oxygenase;
PDBTitle: crystal structure of avio1 from streptomyces viridochromogenes tue57
20c4xbzB_
96.9 12
PDB header:oxidoreductase
Chain: B: PDB Molecule:evdo1;
PDBTitle: crystal structure of evdo1 from micromonospora carbonacea var.2 aurantiaca
21d2fcta1
not modelled 96.8 12
Fold:Double-stranded beta-helix
Superfamily:Clavaminate synthase-like
Family:PhyH-like
22c3nnlB_
not modelled 82.6 14
PDB header:biosynthetic protein
Chain: B: PDB Molecule:cura;
PDBTitle: halogenase domain from cura module (crystal form iii)
23c2lvlA_
not modelled 59.6 52
PDB header:lantibiotic-binding-protein
Chain: A: PDB Molecule:spai;
PDBTitle: nmr structure the lantibiotic immunity protein spai
24c6h3cC_
not modelled 50.5 18
PDB header:signaling protein
Chain: C: PDB Molecule:brisc and brca1-a complex member 2;
PDBTitle: cryo-em structure of the brisc complex bound to shmt2
25c1bvyF_
not modelled 45.9 15
PDB header:oxidoreductase
Chain: F: PDB Molecule:protein (cytochrome p450 bm-3);
PDBTitle: complex of the heme and fmn-binding domains of the2 cytochrome p450(bm-3)
26d1bvyf_
not modelled 45.9 15
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
27d1ueka2
not modelled 45.2 14
Fold:Ferredoxin-like
Superfamily:GHMP Kinase, C-terminal domain
Family:4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE
28c3iaxB_
not modelled 44.4 60
PDB header:protein transport
Chain: B: PDB Molecule:colicin-a;
PDBTitle: the crystal structure of the tolb box of colicin a in complex with2 tolb reveals important differences in the recruitment of the common3 tolb translocation portal used by group a colicins
29c2m6rA_
not modelled 42.6 9
PDB header:electron transport
Chain: A: PDB Molecule:flavodoxin;
PDBTitle: apo_yqca
30c4h2dB_
not modelled 42.1 23
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadph-dependent diflavin oxidoreductase 1;
PDBTitle: crystal structure of ndor1
31c4mndA_
not modelled 37.4 22
PDB header:transferase
Chain: A: PDB Molecule:ctp l-myo-inositol-1-phosphate cytidylyltransferase/cdp-l-
PDBTitle: crystal structure of archaeoglobus fulgidus ipct-dipps bifunctional2 membrane protein
32c4oxxA_
not modelled 33.1 21
PDB header:electron transport
Chain: A: PDB Molecule:cindoxin;
PDBTitle: crystal structure of cindoxin, surface entropy reduction mutant
33c1ex1A_
not modelled 32.7 19
PDB header:hydrolase
Chain: A: PDB Molecule:protein (beta-d-glucan exohydrolase isoenzyme exo1);
PDBTitle: beta-d-glucan exohydrolase from barley
34d1ykga1
not modelled 31.3 19
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Cytochrome p450 reductase N-terminal domain-like
35c1t98B_
not modelled 30.1 21
PDB header:cell cycle
Chain: B: PDB Molecule:chromosome partition protein mukf;
PDBTitle: crystal structure of mukf(1-287)
36c3re2A_
not modelled 30.0 25
PDB header:unknown function
Chain: A: PDB Molecule:predicted protein;
PDBTitle: crystal structure of menin reveals the binding site for mixed lineage2 leukemia (mll) protein
37c3u88B_
not modelled 29.8 23
PDB header:transcription
Chain: B: PDB Molecule:menin;
PDBTitle: crystal structure of human menin in complex with mll1 and ledgf
38c4gq6A_
not modelled 28.3 23
PDB header:transcription/transcription inhibitor
Chain: A: PDB Molecule:menin;
PDBTitle: human menin in complex with mll peptide
39d1rlja_
not modelled 27.3 21
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavoprotein NrdI
40d2azeb1
not modelled 24.8 18
Fold:E2F-DP heterodimerization region
Superfamily:E2F-DP heterodimerization region
Family:E2F dimerization segment
41c4kkkA_
not modelled 24.5 21
PDB header:hydrolase
Chain: A: PDB Molecule:exoglucanase s;
PDBTitle: complex structure of catalytic domain of clostridium cellulovorans2 exgs and cellotetraose
42c5d50E_
not modelled 23.9 18
PDB header:dna binding protein
Chain: E: PDB Molecule:anti-repressor protein;
PDBTitle: crystal structure of rep-ant complex from salmonella-temperate phage
43c2z4tA_
not modelled 20.8 13
PDB header:transferase
Chain: A: PDB Molecule:beta-galactoside alpha-2,6-sialyltransferase;
PDBTitle: crystal structure of vibrionaceae photobacterium sp. jt-ish-224 2,6-2 sialyltransferase in a ternary complex with donor product cmp and3 accepter substrate lactose
44d1ja1a2
not modelled 20.4 13
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Cytochrome p450 reductase N-terminal domain-like
45c2a8vA_
not modelled 20.4 17
PDB header:protein/rna
Chain: A: PDB Molecule:rna binding domain of rho transcription
PDBTitle: rho transcription termination factor/rna complex
46c6r8fE_
not modelled 20.3 22
PDB header:signaling protein
Chain: E: PDB Molecule:brisc and brca1-a complex member 2,brcc45 (bre, brisc and
PDBTitle: cryo-em structure of the human brisc-shmt2 complex
47c6r8fG_
not modelled 20.3 22
PDB header:signaling protein
Chain: G: PDB Molecule:brisc and brca1-a complex member 2,brcc45 (bre, brisc and
PDBTitle: cryo-em structure of the human brisc-shmt2 complex
48d1w7pd2
not modelled 19.7 36
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Vacuolar sorting protein domain
49c5ulmB_
not modelled 19.5 19
PDB header:transferase
Chain: B: PDB Molecule:mitogen-activated protein kinase kinase kinase 5;
PDBTitle: structure of the ask1 central regulatory region
50c4r84B_
not modelled 19.2 13
PDB header:transferase
Chain: B: PDB Molecule:sialyltransferase 0160;
PDBTitle: crystal structure of sialyltransferase from photobacterium damsela2 with cmp-3f(a)neu5ac bound
51c5b3kA_
not modelled 18.7 15
PDB header:electron transport
Chain: A: PDB Molecule:uncharacterized protein pa3435;
PDBTitle: c101a mutant of flavodoxin from pseudomonas aeruginosa
52c4nf9A_
not modelled 18.1 22
PDB header:cell cycle
Chain: A: PDB Molecule:protein casc5;
PDBTitle: structure of the knl1/nsl1 complex
53d1x38a1
not modelled 17.2 19
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:NagZ-like
54c4d2kB_
not modelled 17.0 16
PDB header:apoptosis
Chain: B: PDB Molecule:drep2;
PDBTitle: crystal structure of drep2 cide domain
55d1wwia1
not modelled 16.8 18
Fold:Histone-fold
Superfamily:Histone-fold
Family:Bacterial histone-fold protein
56d1e52a_
not modelled 15.6 20
Fold:Long alpha-hairpin
Superfamily:C-terminal UvrC-binding domain of UvrB
Family:C-terminal UvrC-binding domain of UvrB
57c6ekrA_
not modelled 15.5 21
PDB header:hydrolase
Chain: A: PDB Molecule:type ii site-specific deoxyribonuclease;
PDBTitle: crystal structure of type iip restriction endonuclease kpn2i
58d1jr7a_
not modelled 15.0 18
Fold:Double-stranded beta-helix
Superfamily:Clavaminate synthase-like
Family:Gab protein (hypothetical protein YgaT)
59c3u3iA_
not modelled 14.8 35
PDB header:rna binding protein
Chain: A: PDB Molecule:nucleocapsid protein;
PDBTitle: a rna binding protein from crimean-congo hemorrhagic fever virus
60c3bq9A_
not modelled 14.7 28
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:predicted rossmann fold nucleotide-binding domain-
PDBTitle: crystal structure of predicted nucleotide-binding protein from2 idiomarina baltica os145
61c6go1A_
not modelled 14.6 32
PDB header:hydrolase
Chain: A: PDB Molecule:polysaccharide deacetylase-like protein;
PDBTitle: crystal structure of a bacillus anthracis peptidoglycan deacetylase
62d1b1ca_
not modelled 14.3 11
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Cytochrome p450 reductase N-terminal domain-like
63c4ct7A_
not modelled 14.0 14
PDB header:transcription
Chain: A: PDB Molecule:ccr4-not transcription complex subunit 1;
PDBTitle: cnot9-cnot1 complex with bound tryptophan
64c3o2iB_
not modelled 13.8 16
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: the crystal structure of a functionally unknown protein from2 leptospirillum sp. group ii uba
65c4iw3J_
not modelled 13.8 15
PDB header:metal binding protein/translation
Chain: J: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a pseudomonas putida prolyl-4-hydroxylase (p4h)2 in complex with elongation factor tu (ef-tu)
66c2hnbA_
not modelled 13.7 17
PDB header:electron transport
Chain: A: PDB Molecule:protein mioc;
PDBTitle: solution structure of a bacterial holo-flavodoxin
67c3riuC_
not modelled 13.2 30
PDB header:hydrolase
Chain: C: PDB Molecule:translin associated factor x, isoform b;
PDBTitle: crystal structure of drosophila hexameric c3po formed by truncated2 translin and trax
68c1bcrA_
not modelled 12.6 21
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:serine carboxypeptidase ii;
PDBTitle: complex of the wheat serine carboxypeptidase, cpdw-ii, with the2 microbial peptide aldehyde inhibitor, antipain, and arginine at room3 temperature
69c4j5iH_
not modelled 12.3 20
PDB header:oxidoreductase
Chain: H: PDB Molecule:alpha-ketoglutarate-dependent taurine dioxygenase;
PDBTitle: crystal structure of an alpha-ketoglutarate-dependent taurine2 dioxygenase from mycobacterium smegmatis
70d1zpsa1
not modelled 12.1 22
Fold:HisI-like
Superfamily:HisI-like
Family:HisI-like
71c3gr1A_
not modelled 11.9 17
PDB header:membrane protein
Chain: A: PDB Molecule:protein prgh;
PDBTitle: periplasmic domain of the t3ss inner membrane protein prgh from2 s.typhimurium (fragment 170-392)
72d1eexa_
not modelled 11.8 33
Fold:TIM beta/alpha-barrel
Superfamily:Cobalamin (vitamin B12)-dependent enzymes
Family:Diol dehydratase, alpha subunit
73c2vcbA_
not modelled 11.7 21
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-n-acetylglucosaminidase;
PDBTitle: family 89 glycoside hydrolase from clostridium perfringens2 in complex with pugnac
74c3cw4A_
not modelled 11.7 29
PDB header:transferase
Chain: A: PDB Molecule:polymerase basic protein 2;
PDBTitle: large c-terminal domain of influenza a virus rna-dependent polymerase2 pb2
75c2g19A_
not modelled 11.7 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:egl nine homolog 1;
PDBTitle: cellular oxygen sensing: crystal structure of hypoxia-inducible factor2 prolyl hydroxylase (phd2)
76c3hmjB_
not modelled 11.6 33
PDB header:transferase
Chain: B: PDB Molecule:fatty acid synthase subunit alpha;
PDBTitle: saccharomyces cerevisiae fas type i
77c2e2sA_
not modelled 11.6 44
PDB header:toxin
Chain: A: PDB Molecule:agelenin;
PDBTitle: solution structure of agelenin, an insecticidal peptide2 from the venom of agelena opulenta
78c2vkzC_
not modelled 11.6 33
PDB header:transferase
Chain: C: PDB Molecule:fatty acid synthase subunit alpha;
PDBTitle: structure of the cerulenin-inhibited fungal fatty acid synthase type i2 multienzyme complex
79c5zt3A_
not modelled 11.5 27
PDB header:plant protein
Chain: A: PDB Molecule:wa352;
PDBTitle: crystal structure of wa352 from oryza sativa
80c2hpcH_
not modelled 11.5 18
PDB header:blood clotting
Chain: H: PDB Molecule:fibrinogen beta chain;
PDBTitle: crystal structure of fragment d from human fibrinogen complexed with2 gly-pro-arg-pro-amide.
81d2hlya1
not modelled 11.4 25
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Atu2299-like
82c5hwiA_
not modelled 11.3 37
PDB header:transferase
Chain: A: PDB Molecule:glutathione-specific gamma-glutamylcyclotransferase;
PDBTitle: crystal structure of selenomethionine labelled gama glutamyl2 cyclotransferease specific to glutathione from yeast
83c5tuvB_
not modelled 11.1 21
PDB header:transcription
Chain: B: PDB Molecule:transcription factor e2f5;
PDBTitle: crystal structure of the e2f5-dp1-p107 ternary complex
84c3cgxA_
not modelled 11.0 31
PDB header:transferase
Chain: A: PDB Molecule:putative nucleotide-diphospho-sugar transferase;
PDBTitle: crystal structure of putative nucleotide-diphospho-sugar transferase2 (yp_389115.1) from desulfovibrio desulfuricans g20 at 1.90 a3 resolution
85c3if4C_
not modelled 10.9 31
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:integron cassette protein hfx_cass5;
PDBTitle: structure from the mobile metagenome of north west arm sewage outfall:2 integron cassette protein hfx_cass5
86c6bmeB_
not modelled 10.9 15
PDB header:heme binding protein
Chain: B: PDB Molecule:truncated hemoglobin 4;
PDBTitle: crystal structure of chlamydomonas reinhardtii thb4
87c3bvhE_
not modelled 10.9 16
PDB header:blood clotting
Chain: E: PDB Molecule:fibrinogen beta chain;
PDBTitle: crystal structure of recombinant gammad364a fibrinogen fragment d with2 the peptide ligand gly-pro-arg-pro-amide
88c2uv8C_
not modelled 10.7 33
PDB header:transferase
Chain: C: PDB Molecule:fatty acid synthase subunit alpha (fas2);
PDBTitle: crystal structure of yeast fatty acid synthase with stalled2 acyl carrier protein at 3.1 angstrom resolution
89c3hr4C_
not modelled 10.7 22
PDB header:oxidoreductase/metal binding protein
Chain: C: PDB Molecule:nitric oxide synthase, inducible;
PDBTitle: human inos reductase and calmodulin complex
90d1eysh2
not modelled 10.6 17
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction centre subunit H, transmembrane region
Family:Photosystem II reaction centre subunit H, transmembrane region
91c4az3A_
not modelled 10.4 24
PDB header:hydrolase
Chain: A: PDB Molecule:lysosomal protective protein 32 kda chain;
PDBTitle: crystal structure of cathepsin a, complexed with 15a
92c5odvB_
not modelled 10.4 22
PDB header:virus
Chain: B: PDB Molecule:coat protein;
PDBTitle: structure of watermelon mosaic virus potyvirus.
93d1wg8a1
not modelled 10.4 24
Fold:SAM domain-like
Superfamily:Putative methyltransferase TM0872, insert domain
Family:Putative methyltransferase TM0872, insert domain
94d1xbpg2
not modelled 10.3 75
Fold:Ribosomal L11/L12e N-terminal domain
Superfamily:Ribosomal L11/L12e N-terminal domain
Family:Ribosomal L11/L12e N-terminal domain
95d1mmsa2
not modelled 10.3 75
Fold:Ribosomal L11/L12e N-terminal domain
Superfamily:Ribosomal L11/L12e N-terminal domain
Family:Ribosomal L11/L12e N-terminal domain
96d1r31a1
not modelled 10.3 30
Fold:Ferredoxin-like
Superfamily:NAD-binding domain of HMG-CoA reductase
Family:NAD-binding domain of HMG-CoA reductase
97c4yokA_
not modelled 10.2 16
PDB header:unknown function
Chain: A: PDB Molecule:putative flagellar protein flis;
PDBTitle: crystal structure of a duf3823 family protein (parmer_04126) from2 parabacteroides merdae atcc 43184 at 1.80 a resolution
98d2gpia1
not modelled 10.2 26
Fold:Shew3726-like
Superfamily:Shew3726-like
Family:Shew3726-like
99c2zwiA_
not modelled 10.0 20
PDB header:transferase
Chain: A: PDB Molecule:alpha-/beta-galactoside alpha-2,3-sialyltransferase;
PDBTitle: crystal structure of alpha/beta-galactoside alpha-2,3-2 sialyltransferase from a luminous marine bacterium, photobacterium3 phosphoreum

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