Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0199_(-)_236550_237209
DateTue Jul 23 14:50:25 BST 2019
Unique Job IDfe4c919ba2e0c402
SequenceMPDGEQSQPP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:50.239 Y:35.688 Z:34.178
Model (left) based on template c5cnlA_
Top template information
PDB header:protein transport
Chain: A: PDB Molecule:icml-like;
PDBTitle: crystal structure of an icml-like type iv secretion system protein2 (lpg0120) from legionella pneumophila subsp. pneumophila str.3 philadelphia 1 at 2.65 a resolution
Confidence and coverage
Confidence: 96.7% Coverage: 54%
118 residues ( 54% of your sequence) have been modelled with 96.7% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5cnlA_
96.7 9
PDB header:protein transport
Chain: A: PDB Molecule:icml-like;
PDBTitle: crystal structure of an icml-like type iv secretion system protein2 (lpg0120) from legionella pneumophila subsp. pneumophila str.3 philadelphia 1 at 2.65 a resolution
2c3wz3A_
96.6 10
PDB header:unknown function
Chain: A: PDB Molecule:tram protein;
PDBTitle: structure of a periplasmic fragment of tram
3d2ux0a1
95.9 12
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
4c3wz4F_
95.9 14
PDB header:unknown function
Chain: F: PDB Molecule:doti;
PDBTitle: structure of the periplasmic domain of doti (crystal form i)
5c5d9rA_
95.8 17
PDB header:biosynthetic protein
Chain: A: PDB Molecule:protein accumulation and replication of chloroplasts 6,
PDBTitle: crystal structure of a conserved domain in the intermembrane space2 region of the plastid division protein arc6
6d1hkxa_
95.0 16
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
7c4nhfF_
94.8 12
PDB header:protein transport
Chain: F: PDB Molecule:trwg protein;
PDBTitle: crystal structure of the soluble domain of trwg type iv secretion2 machinery from bartonella grahamii
8c5i97C_
93.8 9
PDB header:protein transport
Chain: C: PDB Molecule:conjugal transfer protein;
PDBTitle: structural analysis and inhibition of trae from the pkm101 type iv2 secretion system
9d3cu3a1
92.4 13
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
10d3d9ra1
91.9 11
Fold:Cystatin-like
Superfamily:NTF2-like
Family:ECA1476-like
11d2f86b1
91.6 11
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
12d2cc3a1
91.5 14
Fold:Cystatin-like
Superfamily:NTF2-like
Family:VirB8-like
13c5ig4A_
91.1 10
PDB header:transferase
Chain: A: PDB Molecule:predicted protein;
PDBTitle: crystal structure of n. vectensis camkii-a hub
14c5ig5E_
90.9 9
PDB header:transferase
Chain: E: PDB Molecule:camkii-b hub;
PDBTitle: crystal structure of n. vectensis camkii-b hub at ph 4.2
15c3h51A_
90.3 16
PDB header:protein binding
Chain: A: PDB Molecule:putative calcium/calmodulin dependent protein kinase ii
PDBTitle: crystal structure of putative calcium/calmodulin dependent protein2 kinase ii association domain (np_636218.1) from xanthomonas3 campestris at 1.70 a resolution
16c4i4kB_
89.9 6
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein sgcj;
PDBTitle: streptomyces globisporus c-1027 9-membered enediyne conserved protein2 sgce6
17c3a76B_
89.7 9
PDB header:lyase
Chain: B: PDB Molecule:gamma-hexachlorocyclohexane dehydrochlorinase;
PDBTitle: the crystal structure of lina
18c3gzrA_
89.1 11
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein with a ntf2-like fold;
PDBTitle: crystal structure of an uncharacterized protein with a cystatin-like2 fold (cc_2572) from caulobacter vibrioides at 1.40 a resolution
19c3f7sA_
88.3 8
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized ntf2-like protein;
PDBTitle: crystal structure of a ntf2-like protein of unknown function (pp_4556)2 from pseudomonas putida kt2440 at 2.11 a resolution
20c5u9oD_
87.9 10
PDB header:cell cycle
Chain: D: PDB Molecule:plastid division protein cdp1, chloroplastic,plastid
PDBTitle: cocrystal structure of the intermembrane space region of the plastid2 division proteins parc6 and pdv1
21c4ovmE_
not modelled 87.2 9
PDB header:unknown function
Chain: E: PDB Molecule:uncharacterized protein sgcj;
PDBTitle: crystal structure of sgcj protein from streptomyces carzinostaticus
22c3robC_
not modelled 87.0 9
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized conserved protein;
PDBTitle: the crystal structure of a conserved protein from planctomyces2 limnophilus dsm 3776
23d3b8la1
not modelled 86.6 16
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
24d3stda_
not modelled 85.1 16
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Scytalone dehydratase
25c6of9G_
not modelled 84.0 18
PDB header:unknown function
Chain: G: PDB Molecule:camkii hub;
PDBTitle: structure of the chlamydamonas reinhardtii camkii hub homology domain
26d2rfra1
not modelled 80.7 14
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
27d2bhma1
not modelled 79.2 14
Fold:Cystatin-like
Superfamily:NTF2-like
Family:VirB8-like
28c2bhmE_
not modelled 78.5 14
PDB header:bacterial protein
Chain: E: PDB Molecule:type iv secretion system protein virb8;
PDBTitle: crystal structure of virb8 from brucella suis
29c4hzbE_
not modelled 77.2 16
PDB header:hydrolase
Chain: E: PDB Molecule:putative periplasmic protein;
PDBTitle: crystal structure of the type vi semet effector-immunity complex tae3-2 tai3 from ralstonia pickettii
30d1idpa_
not modelled 77.2 9
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Scytalone dehydratase
31d3ef8a1
not modelled 76.9 18
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
32c3gwrA_
not modelled 74.6 5
PDB header:protein binding
Chain: A: PDB Molecule:putative calcium/calmodulin-dependent protein kinase type
PDBTitle: crystal structure of putative calcium/calmodulin-dependent protein2 kinase type ii association domain (yp_315894.1) from thiobacillus3 denitrificans atcc 25259 at 2.00 a resolution
33c2rsxA_
not modelled 70.0 5
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:uncharacterized protein yoeb;
PDBTitle: solution structure of isea, an inhibitor protein of dl-endopeptidases2 from bacillus subtilis
34c4lehA_
not modelled 68.7 14
PDB header:lyase
Chain: A: PDB Molecule:bile acid 7-alpha dehydratase, baie;
PDBTitle: crystal structure of a bile-acid 7-alpha dehydratase (closci_03134)2 from clostridium scindens atcc 35704 at 2.90 a resolution
35d2rgqa1
not modelled 68.2 19
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Rv3472-like
36c3k7cC_
not modelled 66.1 15
PDB header:protein binding
Chain: C: PDB Molecule:putative ntf2-like transpeptidase;
PDBTitle: crystal structure of putative ntf2-like transpeptidase (np_281412.1)2 from campylobacter jejuni at 2.00 a resolution
37d3ebya1
not modelled 65.7 12
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
38c4o3vA_
not modelled 65.4 13
PDB header:protein transport
Chain: A: PDB Molecule:virb8-like protein of type iv secretion system;
PDBTitle: crystal structure of a virb8-like protein of type iv secretion system2 from rickettsia typhi
39d3ejva1
not modelled 64.6 24
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
40d3b7ca1
not modelled 64.5 11
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SO0125-like
41c4meiA_
not modelled 63.0 13
PDB header:protein transport
Chain: A: PDB Molecule:virb8 protein;
PDBTitle: crystal structure of a virb8 type iv secretion system machinery2 soluble domain from bartonella tribocorum
42c3ub1C_
not modelled 62.3 18
PDB header:transport protein
Chain: C: PDB Molecule:orf13-like protein;
PDBTitle: ntf2 like protein involved in plasmid conjugation
43d3blza1
not modelled 58.9 23
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Sbal0622-like
44d2b1xb1
not modelled 57.2 2
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
45c3dukD_
not modelled 57.0 33
PDB header:unknown function
Chain: D: PDB Molecule:ntf2-like protein of unknown function;
PDBTitle: crystal structure of a ntf2-like protein of unknown function2 (mfla_0564) from methylobacillus flagellatus kt at 2.200 a resolution
46c3soyA_
not modelled 54.8 4
PDB header:membrane protein
Chain: A: PDB Molecule:ntf2-like superfamily protein;
PDBTitle: nuclear transport factor 2 (ntf2-like) superfamily protein from2 salmonella enterica subsp. enterica serovar typhimurium str. lt2
47c3fkaD_
not modelled 54.4 33
PDB header:unknown function
Chain: D: PDB Molecule:uncharacterized ntf-2 like protein;
PDBTitle: crystal structure of a ntf-2 like protein of unknown function2 (spo1084) from silicibacter pomeroyi dss-3 at 1.69 a resolution
48c3hx8A_
not modelled 53.5 7
PDB header:isomerase
Chain: A: PDB Molecule:putative ketosteroid isomerase;
PDBTitle: crystal structure of putative ketosteroid isomerase (np_103587.1) from2 mesorhizobium loti at 1.45 a resolution
49c3bb9D_
not modelled 52.0 14
PDB header:unknown function
Chain: D: PDB Molecule:putative orphan protein;
PDBTitle: crystal structure of a putative ketosteroid isomerase (sfri_1973) from2 shewanella frigidimarina ncimb 400 at 1.80 a resolution
50c4fczB_
not modelled 50.4 9
PDB header:transport protein
Chain: B: PDB Molecule:toluene-tolerance protein;
PDBTitle: crystal structure of toluene-tolerance protein from pseudomonas putida2 (strain kt2440), northeast structural genomics consortium (nesg)3 target ppr99
51d2chca1
not modelled 49.8 11
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Rv3472-like
52c5ig0A_
not modelled 48.2 11
PDB header:transferase
Chain: A: PDB Molecule:camk/camk2 protein kinase;
PDBTitle: crystal structure of s. rosetta camkii hub
53d2r4ia1
not modelled 46.8 10
Fold:Cystatin-like
Superfamily:NTF2-like
Family:CHU142-like
54c2qguA_
not modelled 46.4 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:probable signal peptide protein;
PDBTitle: three-dimensional structure of the phospholipid-binding protein from2 ralstonia solanacearum q8xv73_ralsq in complex with a phospholipid at3 the resolution 1.53 a. northeast structural genomics consortium4 target rsr89
55d3bb9a1
not modelled 45.2 13
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SO0125-like
56c4gb5A_
not modelled 45.1 8
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of kfla4162 protein from kribbella flavida
57c5uwaB_
not modelled 44.2 14
PDB header:transport protein
Chain: B: PDB Molecule:probable phospholipid-binding protein mlac;
PDBTitle: structure of e. coli phospholipid binding protein mlac
58c4ouqA_
not modelled 42.7 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf4783 family protein (bf1468) from2 bacteroides fragilis ych46 at 1.55 a resolution
59c3kspA_
not modelled 33.8 3
PDB header:unknown function
Chain: A: PDB Molecule:calcium/calmodulin-dependent kinase ii association domain;
PDBTitle: crystal structure of a putative ca/calmodulin-dependent kinase ii2 association domain (exig_1688) from exiguobacterium sibiricum 255-153 at 2.59 a resolution
60c4orlA_
not modelled 33.7 8
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf4783 family protein (bacova_04304) from2 bacteroides ovatus atcc 8483 at 1.40 a resolution
61d2owpa1
not modelled 28.1 12
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BxeB1374-like
62c6bjuD_
not modelled 27.4 0
PDB header:unknown function
Chain: D: PDB Molecule:atzh;
PDBTitle: the structure of atzh: a little known member of the atrazine breakdown2 pathway
63c3ke7A_
not modelled 22.4 11
PDB header:isomerase
Chain: A: PDB Molecule:putative ketosteroid isomerase;
PDBTitle: crystal structure of putative ketosteroid isomerase (yp_001303366.1)2 from parabacteroides distasonis atcc 8503 at 1.45 a resolution
64c2n6uA_
not modelled 22.0 21
PDB header:unknown function
Chain: A: PDB Molecule:astexin2-dc4;
PDBTitle: solution study of astexin2-dc4
65c6f0kA_
not modelled 21.9 11
PDB header:membrane protein
Chain: A: PDB Molecule:cytochrome c family protein;
PDBTitle: alternative complex iii
66c5up5A_
not modelled 21.3 21
PDB header:de novo protein
Chain: A: PDB Molecule:ehee_rd1_0284;
PDBTitle: solution structure of the de novo mini protein ehee_rd1_0284
67c3hzpA_
not modelled 18.8 10
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ntf2-like protein of unknown function;
PDBTitle: crystal structure of ntf2-like protein of unknown function mn2a_05052 from prochlorococcus marinus (yp_291699.1) from prochlorococcus sp.3 natl2a at 1.40 a resolution
68c4r4gA_
not modelled 18.4 4
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative lipoprotein ycda;
PDBTitle: crystal structure of a putative lipoprotein (ycda) from bacillus2 subtilis subsp. subtilis str. 168 at 2.62 a resolution
69c5ts4A_
not modelled 17.1 14
PDB header:de novo protein
Chain: A: PDB Molecule:denovo ntf2;
PDBTitle: crystal structure of a de novo designed protein with curved beta-sheet
70c3fsdA_
not modelled 15.1 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ntf2-like protein of unknown function in nutrient uptake;
PDBTitle: crystal structure of ntf2-like protein of unknown function in nutrient2 uptake (yp_427473.1) from rhodospirillum rubrum atcc 11170 at 1.70 a3 resolution
71d3e99a1
not modelled 12.8 16
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
72d3cnxa1
not modelled 12.2 12
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SAV4671-like
73c2k1kB_
not modelled 11.6 32
PDB header:signaling protein
Chain: B: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3
74c2k1lB_
not modelled 11.6 32
PDB header:signaling protein
Chain: B: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3
75c2k1kA_
not modelled 11.6 32
PDB header:signaling protein
Chain: A: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 4.3
76c2k1lA_
not modelled 11.6 32
PDB header:signaling protein
Chain: A: PDB Molecule:ephrin type-a receptor 1;
PDBTitle: nmr structures of dimeric transmembrane domain of the2 receptor tyrosine kinase epha1 in lipid bicelles at ph 6.3
77d2rcda1
not modelled 10.0 10
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BxeB1374-like
78c3r2cJ_
not modelled 9.3 17
PDB header:transcription/rna
Chain: J: PDB Molecule:30s ribosomal protein s10;
PDBTitle: crystal structure of antitermination factors nusb and nuse in complex2 with boxa rna
79c2kncA_
not modelled 9.1 18
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
80c2lyyB_
not modelled 8.8 17
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: nmr structure of the protein nb7890a from shewanella sp
81c3efyB_
not modelled 8.1 23
PDB header:cell cycle
Chain: B: PDB Molecule:cif (cell cycle inhibiting factor);
PDBTitle: structure of the cyclomodulin cif from pathogenic2 escherichia coli
82c5ve9C_
not modelled 7.6 25
PDB header:protein binding
Chain: C: PDB Molecule:microtubule-actin cross-linking factor 1, isoforms 1/2/3/5;
PDBTitle: structure of hacf7 ef1-ef2-gar domains
83c1xofB_
not modelled 7.5 20
PDB header:de novo protein
Chain: B: PDB Molecule:bbahett1;
PDBTitle: heterooligomeric beta beta alpha miniprotein
84c4w8jA_
not modelled 7.2 7
PDB header:toxin
Chain: A: PDB Molecule:pesticidal crystal protein cry1ac;
PDBTitle: structure of the full-length insecticidal protein cry1ac reveals2 intriguing details of toxin packaging into in vivo formed crystals
85c5xlmB_
not modelled 7.2 9
PDB header:transferase
Chain: B: PDB Molecule:serine/threonine-protein kinase pkni;
PDBTitle: monomer form of m.tuberculosis pkni sensor domain
86c1zeqX_
not modelled 7.1 0
PDB header:metal binding protein
Chain: X: PDB Molecule:cation efflux system protein cusf;
PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli
87c4ce4i_
not modelled 6.4 8
PDB header:ribosome
Chain: I: PDB Molecule:mrpl9;
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
88c3rgaA_
not modelled 6.3 18
PDB header:isomerase
Chain: A: PDB Molecule:epoxide hydrolase;
PDBTitle: crystal structure of epoxide hydrolase for polyether lasalocid a2 biosynthesis
89c6k4vA_
not modelled 6.2 25
PDB header:antibiotic
Chain: A: PDB Molecule:smart chimeric peptide g6;
PDBTitle: the solution structure of the smart chimeric peptide g6
90c3j6vI_
not modelled 6.1 7
PDB header:ribosome
Chain: I: PDB Molecule:28s ribosomal protein s9, mitochondrial;
PDBTitle: cryo-em structure of the small subunit of the mammalian mitochondrial2 ribosome
91c2fyuE_
not modelled 5.9 19
PDB header:oxidoreductase
Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit,
PDBTitle: crystal structure of bovine heart mitochondrial bc1 with jg1442 inhibitor
92c5tfyJ_
not modelled 5.8 23
PDB header:cell adhesion
Chain: J: PDB Molecule:flagellin;
PDBTitle: the archaeal flagellum of methanospirillum hungatei strain jf1.
93d1v5ra1
not modelled 5.5 25
Fold:N domain of copper amine oxidase-like
Superfamily:GAS2 domain-like
Family:GAS2 domain
94c6k4wA_
not modelled 5.5 25
PDB header:antibiotic
Chain: A: PDB Molecule:scp-a6;
PDBTitle: smart chimeric peptide scp-a6
95c2gbxF_
not modelled 5.2 10
PDB header:oxidoreductase
Chain: F: PDB Molecule:biphenyl 2,3-dioxygenase beta subunit;
PDBTitle: crystal structure of biphenyl 2,3-dioxygenase from sphingomonas2 yanoikuyae b1 bound to biphenyl
96d1t33a1
not modelled 5.1 9
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain

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Transmembrane helix prediction 

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