Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0200_(-)_237206_237895
DateTue Jul 23 14:50:25 BST 2019
Unique Job IDac58f5b00d77057f
SequenceMRNAWRLVVF ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:43.223 Y:40.360 Z:42.535
Model (left) based on template c4i4kB_
Top template information
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein sgcj;
PDBTitle: streptomyces globisporus c-1027 9-membered enediyne conserved protein2 sgce6
Confidence and coverage
Confidence: 97.3% Coverage: 48%
110 residues ( 48% of your sequence) have been modelled with 97.3% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4i4kB_
97.3 12
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein sgcj;
PDBTitle: streptomyces globisporus c-1027 9-membered enediyne conserved protein2 sgce6
2d2ux0a1
97.2 18
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
3d2rfra1
97.1 15
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
4d3b8la1
96.9 8
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
5d1hkxa_
96.9 15
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
6c5d9rA_
96.5 11
PDB header:biosynthetic protein
Chain: A: PDB Molecule:protein accumulation and replication of chloroplasts 6,
PDBTitle: crystal structure of a conserved domain in the intermembrane space2 region of the plastid division protein arc6
7d2f86b1
96.3 15
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
8c3h51A_
96.3 15
PDB header:protein binding
Chain: A: PDB Molecule:putative calcium/calmodulin dependent protein kinase ii
PDBTitle: crystal structure of putative calcium/calmodulin dependent protein2 kinase ii association domain (np_636218.1) from xanthomonas3 campestris at 1.70 a resolution
9d3cu3a1
96.3 15
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
10c5cnlA_
96.2 9
PDB header:protein transport
Chain: A: PDB Molecule:icml-like;
PDBTitle: crystal structure of an icml-like type iv secretion system protein2 (lpg0120) from legionella pneumophila subsp. pneumophila str.3 philadelphia 1 at 2.65 a resolution
11c3wz4F_
96.2 12
PDB header:unknown function
Chain: F: PDB Molecule:doti;
PDBTitle: structure of the periplasmic domain of doti (crystal form i)
12c4nhfF_
96.1 10
PDB header:protein transport
Chain: F: PDB Molecule:trwg protein;
PDBTitle: crystal structure of the soluble domain of trwg type iv secretion2 machinery from bartonella grahamii
13c5ig4A_
96.1 14
PDB header:transferase
Chain: A: PDB Molecule:predicted protein;
PDBTitle: crystal structure of n. vectensis camkii-a hub
14d2cc3a1
95.8 8
Fold:Cystatin-like
Superfamily:NTF2-like
Family:VirB8-like
15d3d9ra1
95.7 15
Fold:Cystatin-like
Superfamily:NTF2-like
Family:ECA1476-like
16c3gzrA_
95.6 14
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein with a ntf2-like fold;
PDBTitle: crystal structure of an uncharacterized protein with a cystatin-like2 fold (cc_2572) from caulobacter vibrioides at 1.40 a resolution
17c3a76B_
95.5 7
PDB header:lyase
Chain: B: PDB Molecule:gamma-hexachlorocyclohexane dehydrochlorinase;
PDBTitle: the crystal structure of lina
18c4ovmE_
95.5 16
PDB header:unknown function
Chain: E: PDB Molecule:uncharacterized protein sgcj;
PDBTitle: crystal structure of sgcj protein from streptomyces carzinostaticus
19c3hx8A_
95.4 12
PDB header:isomerase
Chain: A: PDB Molecule:putative ketosteroid isomerase;
PDBTitle: crystal structure of putative ketosteroid isomerase (np_103587.1) from2 mesorhizobium loti at 1.45 a resolution
20c5u9oD_
95.3 13
PDB header:cell cycle
Chain: D: PDB Molecule:plastid division protein cdp1, chloroplastic,plastid
PDBTitle: cocrystal structure of the intermembrane space region of the plastid2 division proteins parc6 and pdv1
21c5i97C_
not modelled 95.3 9
PDB header:protein transport
Chain: C: PDB Molecule:conjugal transfer protein;
PDBTitle: structural analysis and inhibition of trae from the pkm101 type iv2 secretion system
22c5ig5E_
not modelled 95.2 15
PDB header:transferase
Chain: E: PDB Molecule:camkii-b hub;
PDBTitle: crystal structure of n. vectensis camkii-b hub at ph 4.2
23c3robC_
not modelled 95.1 12
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized conserved protein;
PDBTitle: the crystal structure of a conserved protein from planctomyces2 limnophilus dsm 3776
24c3f7sA_
not modelled 94.9 9
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized ntf2-like protein;
PDBTitle: crystal structure of a ntf2-like protein of unknown function (pp_4556)2 from pseudomonas putida kt2440 at 2.11 a resolution
25d2rgqa1
not modelled 94.9 6
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Rv3472-like
26d2chca1
not modelled 94.3 9
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Rv3472-like
27d1idpa_
not modelled 94.3 17
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Scytalone dehydratase
28c6of9G_
not modelled 93.5 13
PDB header:unknown function
Chain: G: PDB Molecule:camkii hub;
PDBTitle: structure of the chlamydamonas reinhardtii camkii hub homology domain
29c2bhmE_
not modelled 93.4 9
PDB header:bacterial protein
Chain: E: PDB Molecule:type iv secretion system protein virb8;
PDBTitle: crystal structure of virb8 from brucella suis
30c3wz3A_
not modelled 93.4 10
PDB header:unknown function
Chain: A: PDB Molecule:tram protein;
PDBTitle: structure of a periplasmic fragment of tram
31d2r4ia1
not modelled 93.4 8
Fold:Cystatin-like
Superfamily:NTF2-like
Family:CHU142-like
32d3ef8a1
not modelled 93.3 9
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
33d3cnxa1
not modelled 93.2 18
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SAV4671-like
34d3stda_
not modelled 92.8 16
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Scytalone dehydratase
35d2bhma1
not modelled 92.7 9
Fold:Cystatin-like
Superfamily:NTF2-like
Family:VirB8-like
36d3ebya1
not modelled 92.5 12
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
37c4meiA_
not modelled 92.3 11
PDB header:protein transport
Chain: A: PDB Molecule:virb8 protein;
PDBTitle: crystal structure of a virb8 type iv secretion system machinery2 soluble domain from bartonella tribocorum
38d3ejva1
not modelled 92.0 16
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
39c3bb9D_
not modelled 90.9 12
PDB header:unknown function
Chain: D: PDB Molecule:putative orphan protein;
PDBTitle: crystal structure of a putative ketosteroid isomerase (sfri_1973) from2 shewanella frigidimarina ncimb 400 at 1.80 a resolution
40c4lehA_
not modelled 89.2 7
PDB header:lyase
Chain: A: PDB Molecule:bile acid 7-alpha dehydratase, baie;
PDBTitle: crystal structure of a bile-acid 7-alpha dehydratase (closci_03134)2 from clostridium scindens atcc 35704 at 2.90 a resolution
41c4gb5A_
not modelled 88.6 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of kfla4162 protein from kribbella flavida
42d3blza1
not modelled 88.4 14
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Sbal0622-like
43c2gbxF_
not modelled 87.7 11
PDB header:oxidoreductase
Chain: F: PDB Molecule:biphenyl 2,3-dioxygenase beta subunit;
PDBTitle: crystal structure of biphenyl 2,3-dioxygenase from sphingomonas2 yanoikuyae b1 bound to biphenyl
44c3k7cC_
not modelled 87.1 16
PDB header:protein binding
Chain: C: PDB Molecule:putative ntf2-like transpeptidase;
PDBTitle: crystal structure of putative ntf2-like transpeptidase (np_281412.1)2 from campylobacter jejuni at 2.00 a resolution
45d2b1xb1
not modelled 87.1 13
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
46c4hzbE_
not modelled 86.4 20
PDB header:hydrolase
Chain: E: PDB Molecule:putative periplasmic protein;
PDBTitle: crystal structure of the type vi semet effector-immunity complex tae3-2 tai3 from ralstonia pickettii
47c3gwrA_
not modelled 85.6 12
PDB header:protein binding
Chain: A: PDB Molecule:putative calcium/calmodulin-dependent protein kinase type
PDBTitle: crystal structure of putative calcium/calmodulin-dependent protein2 kinase type ii association domain (yp_315894.1) from thiobacillus3 denitrificans atcc 25259 at 2.00 a resolution
48c3soyA_
not modelled 83.2 13
PDB header:membrane protein
Chain: A: PDB Molecule:ntf2-like superfamily protein;
PDBTitle: nuclear transport factor 2 (ntf2-like) superfamily protein from2 salmonella enterica subsp. enterica serovar typhimurium str. lt2
49c6bjuD_
not modelled 81.7 14
PDB header:unknown function
Chain: D: PDB Molecule:atzh;
PDBTitle: the structure of atzh: a little known member of the atrazine breakdown2 pathway
50d3e99a1
not modelled 81.6 6
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
51c4fczB_
not modelled 80.5 17
PDB header:transport protein
Chain: B: PDB Molecule:toluene-tolerance protein;
PDBTitle: crystal structure of toluene-tolerance protein from pseudomonas putida2 (strain kt2440), northeast structural genomics consortium (nesg)3 target ppr99
52d3b7ca1
not modelled 80.3 10
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SO0125-like
53c5ig0A_
not modelled 79.2 14
PDB header:transferase
Chain: A: PDB Molecule:camk/camk2 protein kinase;
PDBTitle: crystal structure of s. rosetta camkii hub
54c3ub1C_
not modelled 72.5 16
PDB header:transport protein
Chain: C: PDB Molecule:orf13-like protein;
PDBTitle: ntf2 like protein involved in plasmid conjugation
55d1vqqa1
not modelled 72.1 10
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Penicillin binding protein 2a (PBP2A), N-terminal domain
56c2rsxA_
not modelled 66.3 26
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:uncharacterized protein yoeb;
PDBTitle: solution structure of isea, an inhibitor protein of dl-endopeptidases2 from bacillus subtilis
57c2qguA_
not modelled 64.6 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:probable signal peptide protein;
PDBTitle: three-dimensional structure of the phospholipid-binding protein from2 ralstonia solanacearum q8xv73_ralsq in complex with a phospholipid at3 the resolution 1.53 a. northeast structural genomics consortium4 target rsr89
58c1mwuA_
not modelled 63.5 11
PDB header:biosynthetic protein
Chain: A: PDB Molecule:penicillin-binding protein 2a;
PDBTitle: structure of methicillin acyl-penicillin binding protein 2a from2 methicillin resistant staphylococcus aureus strain 27r at 2.60 a3 resolution.
59c5uwaB_
not modelled 55.4 8
PDB header:transport protein
Chain: B: PDB Molecule:probable phospholipid-binding protein mlac;
PDBTitle: structure of e. coli phospholipid binding protein mlac
60d2cw9a1
not modelled 55.2 12
Fold:Cystatin-like
Superfamily:NTF2-like
Family:TIM44-like
61d2owpa1
not modelled 52.1 13
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BxeB1374-like
62c3ke7A_
not modelled 49.6 9
PDB header:isomerase
Chain: A: PDB Molecule:putative ketosteroid isomerase;
PDBTitle: crystal structure of putative ketosteroid isomerase (yp_001303366.1)2 from parabacteroides distasonis atcc 8503 at 1.45 a resolution
63c3dukD_
not modelled 48.7 21
PDB header:unknown function
Chain: D: PDB Molecule:ntf2-like protein of unknown function;
PDBTitle: crystal structure of a ntf2-like protein of unknown function2 (mfla_0564) from methylobacillus flagellatus kt at 2.200 a resolution
64c4ce4i_
not modelled 48.1 13
PDB header:ribosome
Chain: I: PDB Molecule:mrpl9;
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
65c3fkaD_
not modelled 41.1 14
PDB header:unknown function
Chain: D: PDB Molecule:uncharacterized ntf-2 like protein;
PDBTitle: crystal structure of a ntf-2 like protein of unknown function2 (spo1084) from silicibacter pomeroyi dss-3 at 1.69 a resolution
66d3bb9a1
not modelled 40.0 12
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SO0125-like
67c3hzpA_
not modelled 40.0 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ntf2-like protein of unknown function;
PDBTitle: crystal structure of ntf2-like protein of unknown function mn2a_05052 from prochlorococcus marinus (yp_291699.1) from prochlorococcus sp.3 natl2a at 1.40 a resolution
68c4o3vA_
not modelled 35.3 7
PDB header:protein transport
Chain: A: PDB Molecule:virb8-like protein of type iv secretion system;
PDBTitle: crystal structure of a virb8-like protein of type iv secretion system2 from rickettsia typhi
69c6humQ_
not modelled 33.8 24
PDB header:proton transport
Chain: Q: PDB Molecule:proton-translocating nadh-quinone dehydrogenase subunit q
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
70c4y4vB_
not modelled 33.6 6
PDB header:hydrolase
Chain: B: PDB Molecule:conserved hypothetical secreted protein;
PDBTitle: structure of helicobacter pylori csd6 in the d-ala-bound state
71c4r4gA_
not modelled 28.4 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative lipoprotein ycda;
PDBTitle: crystal structure of a putative lipoprotein (ycda) from bacillus2 subtilis subsp. subtilis str. 168 at 2.62 a resolution
72c3fsdA_
not modelled 24.5 10
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ntf2-like protein of unknown function in nutrient uptake;
PDBTitle: crystal structure of ntf2-like protein of unknown function in nutrient2 uptake (yp_427473.1) from rhodospirillum rubrum atcc 11170 at 1.70 a3 resolution
73c3kspA_
not modelled 24.3 10
PDB header:unknown function
Chain: A: PDB Molecule:calcium/calmodulin-dependent kinase ii association domain;
PDBTitle: crystal structure of a putative ca/calmodulin-dependent kinase ii2 association domain (exig_1688) from exiguobacterium sibiricum 255-153 at 2.59 a resolution
74c3gzxB_
not modelled 22.7 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:biphenyl dioxygenase subunit beta;
PDBTitle: crystal structure of the biphenyl dioxygenase in complex with biphenyl2 from comamonas testosteroni sp. strain b-356
75c5up5A_
not modelled 20.3 43
PDB header:de novo protein
Chain: A: PDB Molecule:ehee_rd1_0284;
PDBTitle: solution structure of the de novo mini protein ehee_rd1_0284
76d1ulib_
not modelled 17.4 10
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
77c1zeqX_
not modelled 15.1 14
PDB header:metal binding protein
Chain: X: PDB Molecule:cation efflux system protein cusf;
PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli
78d1wqlb1
not modelled 14.5 11
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
79c2yewI_
not modelled 13.6 23
PDB header:virus
Chain: I: PDB Molecule:e2 envelope glycoprotein;
PDBTitle: modeling barmah forest virus structural proteins
80c4orlA_
not modelled 13.5 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf4783 family protein (bacova_04304) from2 bacteroides ovatus atcc 8483 at 1.40 a resolution
81c4ouqA_
not modelled 13.1 5
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf4783 family protein (bf1468) from2 bacteroides fragilis ych46 at 1.55 a resolution
82c5ve9C_
not modelled 12.2 38
PDB header:protein binding
Chain: C: PDB Molecule:microtubule-actin cross-linking factor 1, isoforms 1/2/3/5;
PDBTitle: structure of hacf7 ef1-ef2-gar domains
83d1g6pa_
not modelled 11.5 10
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
84c3qk9B_
not modelled 11.4 14
PDB header:protein transport
Chain: B: PDB Molecule:mitochondrial import inner membrane translocase subunit
PDBTitle: yeast tim44 c-terminal domain complexed with cymal-3
85c2l3oA_
not modelled 10.8 50
PDB header:cytokine
Chain: A: PDB Molecule:interleukin 3;
PDBTitle: solution structure of murine interleukin 3
86d1v5ra1
not modelled 10.3 38
Fold:N domain of copper amine oxidase-like
Superfamily:GAS2 domain-like
Family:GAS2 domain
87c6bzfG_
not modelled 9.7 33
PDB header:dna binding protein
Chain: G: PDB Molecule:sporulation-specific protein 16;
PDBTitle: structure of s. cerevisiae zip2:spo16 complex, c2 form
88c5vf3Z_
not modelled 9.6 67
PDB header:virus
Chain: Z: PDB Molecule:highly immunogenic outer capsid protein;
PDBTitle: bacteriophage t4 isometric capsid
89c3wxxF_
not modelled 9.0 6
PDB header:membrane protein/chaperone
Chain: F: PDB Molecule:aopb;
PDBTitle: crystal structure of a t3ss complex from aeromonas hydrophila
90c3cvgC_
not modelled 8.5 14
PDB header:metal binding protein
Chain: C: PDB Molecule:putative metal binding protein;
PDBTitle: crystal structure of a periplasmic putative metal binding protein
91c2ml6A_
not modelled 7.8 27
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: nmr structure of protein zp_02069618.1 from bacteroides uniformis atcc2 8492
92c4jzaB_
not modelled 7.0 5
PDB header:hydrolase
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a legionella phosphoinositide phosphatase:2 insights into lipid metabolism in pathogen host interaction
93c2lxcB_
not modelled 5.7 15
PDB header:protein binding/protein binding
Chain: B: PDB Molecule:small glutamine-rich tetratricopeptide repeat-containing
PDBTitle: solution structure of the complex between the sgt2 homodimerization2 domain and the get5 ubl domain
94c5ts4A_
not modelled 5.7 5
PDB header:de novo protein
Chain: A: PDB Molecule:denovo ntf2;
PDBTitle: crystal structure of a de novo designed protein with curved beta-sheet
95c5uyvA_
not modelled 5.3 18
PDB header:metal transport
Chain: A: PDB Molecule:periplasmic chelated iron-binding protein yfea;
PDBTitle: yfea ancillary sites that do not co-load with site 2
96c3r2cJ_
not modelled 5.2 6
PDB header:transcription/rna
Chain: J: PDB Molecule:30s ribosomal protein s10;
PDBTitle: crystal structure of antitermination factors nusb and nuse in complex2 with boxa rna
97d2rcda1
not modelled 5.1 18
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BxeB1374-like

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below