Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0201c_(-)_237892_238395
DateTue Jul 23 14:50:25 BST 2019
Unique Job IDa5a3b86cf76f6eef
SequenceVTLAAEPHPA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:26.854 Y:27.461 Z:30.024
Model (left) based on template c1y9qA_
Top template information
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, hth_3 family;
PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae
Confidence and coverage
Confidence: 95.8% Coverage: 35%
58 residues ( 35% of your sequence) have been modelled with 95.8% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1y9qA_



95.8 22
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, hth_3 family;
PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae
2c2xcjB_



95.3 25
PDB header:viral protein
Chain: B: PDB Molecule:c protein;
PDBTitle: crystal structure of p2 c, the immunity repressor of2 temperate e. coli phage p2
3c3trbA_



94.5 20
PDB header:dna binding protein
Chain: A: PDB Molecule:virulence-associated protein i;
PDBTitle: structure of an addiction module antidote protein of a higa (higa)2 family from coxiella burnetii
4c3cecA_



94.4 22
PDB header:transcription
Chain: A: PDB Molecule:putative antidote protein of plasmid maintenance system;
PDBTitle: crystal structure of a putative antidote protein of plasmid2 maintenance system (npun_f2943) from nostoc punctiforme pcc 73102 at3 1.60 a resolution
5c4mcxE_



94.4 27
PDB header:toxin
Chain: E: PDB Molecule:antidote protein;
PDBTitle: p. vulgaris higba structure, crystal form 2
6c6f8sA_



94.1 18
PDB header:toxin
Chain: A: PDB Molecule:xre family transcriptional regulator;
PDBTitle: toxin-antitoxin complex grata
7d1y9qa1



94.0 22
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Probable transcriptional regulator VC1968, N-terminal domain
8d1x57a1



93.5 21
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:EDF1-like
9d1adra_



93.4 6
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
10c3vk0B_



93.2 20
PDB header:dna binding protein
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of hypothetical transcription factor nhtf from2 neisseria
11c3dnvB_



93.1 14
PDB header:transcription/dna
Chain: B: PDB Molecule:hth-type transcriptional regulator hipb;
PDBTitle: mdt protein
12c6b9rD_



93.1 16
PDB header:oxidoreductase
Chain: D: PDB Molecule:hydroxyethylphosphonate dioxygenase;
PDBTitle: streptomyces albus hepd with substrate 2-hydroxyethylphosphonate (2-2 hep) and fe(ii) bound
13c2o38A_



93.0 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: putative xre family transcriptional regulator
14d2o38a1



93.0 16
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:NE1354
15c5j9iH_



92.9 12
PDB header:antitoxin
Chain: H: PDB Molecule:antitoxin iga-2;
PDBTitle: crystal structure of the higa2 antitoxin c-terminal domain
16c2jvlA_



92.8 23
PDB header:transcription
Chain: A: PDB Molecule:trmbf1;
PDBTitle: nmr structure of the c-terminal domain of mbf1 of trichoderma reesei
17d1rioa_



92.8 15
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
18d1y7ya1



92.3 13
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
19d2b5aa1



92.3 13
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
20c2kpjA_



92.3 20
PDB header:transcription regulator
Chain: A: PDB Molecule:sos-response transcriptional repressor, lexa;
PDBTitle: solution structure of protein sos-response transcriptional2 repressor, lexa from eubacterium rectale. northeast3 structural genomics consortium target err9a
21d2icta1



not modelled 91.8 16
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
22c3clcC_



not modelled 91.6 6
PDB header:transcription regulator/dna
Chain: C: PDB Molecule:regulatory protein;
PDBTitle: crystal structure of the restriction-modification controller protein2 c.esp1396i tetramer in complex with its natural 35 base-pair operator
23d2a6ca1



not modelled 91.5 24
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:NE1354
24c3f52A_



not modelled 91.3 17
PDB header:transcription activator
Chain: A: PDB Molecule:clp gene regulator (clgr);
PDBTitle: crystal structure of the clp gene regulator clgr from c. glutamicum
25c2ebyA_



not modelled 91.3 16
PDB header:transcription
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ybaq;
PDBTitle: crystal structure of a hypothetical protein from e. coli
26c3omtA_



not modelled 91.0 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: putative antitoxin component, chu_2935 protein, from xre family from2 prevotella buccae.
27d2r1jl1



not modelled 90.7 6
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
28c2ewtA_



not modelled 90.7 11
PDB header:dna binding protein
Chain: A: PDB Molecule:putative dna-binding protein;
PDBTitle: crystal structure of the dna-binding domain of bldd
29c3eusB_



not modelled 90.5 9
PDB header:dna binding protein
Chain: B: PDB Molecule:dna-binding protein;
PDBTitle: the crystal structure of the dna binding protein from silicibacter2 pomeroyi
30c2ppxA_



not modelled 90.2 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein atu1735;
PDBTitle: crystal structure of a hth xre-family like protein from agrobacterium2 tumefaciens
31d2ppxa1



not modelled 90.2 14
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
32c5d50I_



not modelled 90.2 12
PDB header:dna binding protein
Chain: I: PDB Molecule:repressor;
PDBTitle: crystal structure of rep-ant complex from salmonella-temperate phage
33d2ofya1



not modelled 90.0 21
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
34c3zhiA_



not modelled 89.9 14
PDB header:transcription
Chain: A: PDB Molecule:ci;
PDBTitle: n-terminal domain of the ci repressor from bacteriophage tp901-1
35d1b0na2



not modelled 89.8 16
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
36c3f6wE_



not modelled 89.7 10
PDB header:dna binding protein
Chain: E: PDB Molecule:xre-family like protein;
PDBTitle: xre-family like protein from pseudomonas syringae pv. tomato str.2 dc3000
37d1utxa_



not modelled 89.6 18
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:SinR domain-like
38c2mezA_



not modelled 89.5 14
PDB header:rna binding protein
Chain: A: PDB Molecule:multiprotein bridging factor (mbp-like);
PDBTitle: flexible anchoring of archaeal mbf1 on ribosomes suggests role as2 recruitment factor
39c5woqA_



not modelled 89.1 15
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator clgr;
PDBTitle: crystal structure of an xre family protein transcriptional regulator2 from mycobacterium smegmatis
40c3bs3A_



not modelled 88.9 13
PDB header:dna binding protein
Chain: A: PDB Molecule:putative dna-binding protein;
PDBTitle: crystal structure of a putative dna-binding protein from bacteroides2 fragilis
41c5jaaB_



not modelled 88.6 12
PDB header:toxin
Chain: B: PDB Molecule:antitoxin iga-2;
PDBTitle: crystal structure of the higba2 toxin-antitoxin complex
42c3bdnB_



not modelled 88.6 17
PDB header:transcription/dna
Chain: B: PDB Molecule:lambda repressor;
PDBTitle: crystal structure of the lambda repressor
43c5d4zF_



not modelled 88.5 10
PDB header:dna binding protein
Chain: F: PDB Molecule:repressor;
PDBTitle: crystal structure of repressor from salmonella-temperate phage
44c3fmyA_



not modelled 88.0 18
PDB header:dna binding protein
Chain: A: PDB Molecule:hth-type transcriptional regulator mqsa
PDBTitle: structure of the c-terminal domain of the e. coli protein2 mqsa (ygit/b3021)
45d1lmb3_



not modelled 87.1 15
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
46c1b0nA_



not modelled 86.0 17
PDB header:transcription regulator
Chain: A: PDB Molecule:protein (sinr protein);
PDBTitle: sinr protein/sini protein complex
47d1sq8a_



not modelled 86.0 17
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
48c3op9A_



not modelled 85.7 21
PDB header:transcription regulator
Chain: A: PDB Molecule:pli0006 protein;
PDBTitle: crystal structure of transcriptional regulator from listeria innocua
49c3b7hA_



not modelled 84.0 17
PDB header:structural protein
Chain: A: PDB Molecule:prophage lp1 protein 11;
PDBTitle: crystal structure of the prophage lp1 protein 11
50c3gn5B_



not modelled 84.0 20
PDB header:dna binding protein
Chain: B: PDB Molecule:hth-type transcriptional regulator mqsa (ygit/b3021);
PDBTitle: structure of the e. coli protein mqsa (ygit/b3021)
51c2mqkA_



not modelled 83.8 8
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent target dna activator b;
PDBTitle: solution structure of n terminal domain of the mub aaa+ atpase
52c3pxpA_



not modelled 83.6 20
PDB header:transcription regulator
Chain: A: PDB Molecule:helix-turn-helix domain protein;
PDBTitle: crystal structure of a pas and dna binding domain containing protein2 (caur_2278) from chloroflexus aurantiacus j-10-fl at 2.30 a3 resolution
53c5uk3J_



not modelled 83.4 24
PDB header:lyase
Chain: J: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of cyanase from t. urticae
54d1r69a_



not modelled 83.0 19
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
55c4pu4C_



not modelled 82.8 16
PDB header:toxin/antitoxin/dna
Chain: C: PDB Molecule:toxin-antitoxin system antidote transcriptional repressor
PDBTitle: shewanella oneidensis mr-1 toxin antitoxin system hipa, hipb and its2 operator dna complex (space group p21)
56c3kxaD_



not modelled 82.7 16
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of ngo0477 from neisseria gonorrhoeae
57c4ybaA_



not modelled 82.7 11
PDB header:gene regulation
Chain: A: PDB Molecule:regulatory protein c;
PDBTitle: the structure of the c.kpn2i controller protein
58c2bnoA_



not modelled 81.7 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:epoxidase;
PDBTitle: the structure of hydroxypropylphosphonic acid epoxidase from s.2 wedmorenis.
59c3ivpD_



not modelled 81.2 17
PDB header:dna binding protein
Chain: D: PDB Molecule:putative transposon-related dna-binding protein;
PDBTitle: the structure of a possible transposon-related dna-binding protein2 from clostridium difficile 630.
60c3mlfC_



not modelled 79.7 15
PDB header:transcription regulator
Chain: C: PDB Molecule:transcriptional regulator;
PDBTitle: putative transcriptional regulator from staphylococcus aureus.
61c6b9tH_



not modelled 79.2 15
PDB header:oxidoreductase
Chain: H: PDB Molecule:methylphosphonate synthase;
PDBTitle: crystal structure of mpns with substrate 2-hydroxyethylphosphonate (2-2 hep) and fe(ii) bound
62d2croa_



not modelled 78.7 14
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
63c4ghjA_



not modelled 78.6 17
PDB header:transcription
Chain: A: PDB Molecule:probable transcriptional regulator;
PDBTitle: 1.75 angstrom crystal structure of transcriptional regulator ftom2 vibrio vulnificus.
64d1llib_



not modelled 78.2 22
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
65c3lisB_



not modelled 78.0 21
PDB header:transcription
Chain: B: PDB Molecule:csp231i c protein;
PDBTitle: crystal structure of the restriction-modification controller protein2 c.csp231i (monoclinic form)
66c6fkgC_



not modelled 76.7 19
PDB header:toxin
Chain: C: PDB Molecule:rv1990c (mbca);
PDBTitle: crystal structure of the m.tuberculosis mbct-mbca toxin-antitoxin2 complex.
67c2ef8A_



not modelled 72.8 15
PDB header:transcription regulator
Chain: A: PDB Molecule:putative transcription factor;
PDBTitle: crystal structure of c.ecot38is
68c5j2yA_



not modelled 72.5 17
PDB header:gene regulation/dna
Chain: A: PDB Molecule:regulatory protein;
PDBTitle: molecular insight into the regulatory mechanism of the quorum-sensing2 repressor rsal in pseudomonas aeruginosa
69c4o8bA_



not modelled 69.8 12
PDB header:dna binding protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of transcriptional regulator bswr
70c3t76A_



not modelled 68.1 13
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator vanug;
PDBTitle: crystal structure of transcriptional regulator vanug, form ii
71c2fjrB_



not modelled 63.3 9
PDB header:transcription regulator
Chain: B: PDB Molecule:repressor protein ci;
PDBTitle: crystal structure of bacteriophage 186
72c4d10H_



not modelled 59.8 17
PDB header:signaling protein
Chain: H: PDB Molecule:cop9 signalosome complex subunit 8;
PDBTitle: crystal structure of the cop9 signalosome
73d1zs4a1



not modelled 49.0 25
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Bacteriophage CII protein
74c3qyxD_



not modelled 45.5 28
PDB header:transcription/dna
Chain: D: PDB Molecule:esx-1 secretion-associated regulator espr;
PDBTitle: crystal structure of mycobacterium tuberculosis espr in complex with a2 small dna fragment
75c2ebiA_



not modelled 38.2 10
PDB header:dna binding protein
Chain: A: PDB Molecule:dna binding protein gt-1;
PDBTitle: arabidopsis gt-1 dna-binding domain with t133d phosphomimetic mutation
76c2ksnA_



not modelled 37.2 38
PDB header:signaling protein
Chain: A: PDB Molecule:ubiquitin domain-containing protein 2;
PDBTitle: solution structure of the n-terminal domain of dc-ubp/ubtd2
77c4itqA_



not modelled 31.3 17
PDB header:gene regulation, structural protein/dna
Chain: A: PDB Molecule:putative uncharacterized protein sco1480;
PDBTitle: crystal structure of hypothetical protein sco1480 bound to dna
78d1x41a1



not modelled 24.5 22
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
79c2vgeA_



not modelled 20.9 26
PDB header:transcription
Chain: A: PDB Molecule:rela-associated inhibitor;
PDBTitle: crystal structure of the c-terminal region of human iaspp
80d2a0ba_



not modelled 20.6 17
Fold:Four-helical up-and-down bundle
Superfamily:Histidine-containing phosphotransfer domain, HPT domain
Family:Aerobic respiration control sensor protein, ArcB
81c2elkA_



not modelled 20.5 22
PDB header:transcription
Chain: A: PDB Molecule:spcc24b10.08c protein;
PDBTitle: solution structure of the sant domain of fission yeast2 spcc24b10.08c protein
82c2hu9B_



not modelled 20.3 24
PDB header:metal transport
Chain: B: PDB Molecule:mercuric transport protein periplasmic component;
PDBTitle: x-ray structure of the archaeoglobus fulgidus copz n-2 terminal domain
83d2cqqa1



not modelled 20.1 47
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Myb/SANT domain
84c2kwhA_



not modelled 19.9 78
PDB header:transport protein
Chain: A: PDB Molecule:rala-binding protein 1;
PDBTitle: ral binding domain of rlip76 (ralbp1)
85c3myfB_



not modelled 19.5 32
PDB header:transferase
Chain: B: PDB Molecule:sensor protein;
PDBTitle: the crystal structure of the hpt domain from the hpt sensor hybrid2 histidine kinase from shewanella to 1.80a
86c2ym0B_



not modelled 19.2 16
PDB header:cell invasion
Chain: B: PDB Molecule:cell invasion protein sipd;
PDBTitle: truncated sipd from salmonella typhimurium
87c3iqtA_



not modelled 17.3 12
PDB header:transferase
Chain: A: PDB Molecule:signal transduction histidine-protein kinase bara;
PDBTitle: structure of the hpt domain of sensor protein bara from escherichia2 coli cft073.
88c3nzzA_



not modelled 16.6 16
PDB header:cell invasion
Chain: A: PDB Molecule:cell invasion protein sipd;
PDBTitle: crystal structure of the salmonella type iii secretion system tip2 protein sipd
89c1zgwA_



not modelled 16.1 9
PDB header:transcription regulator/dna
Chain: A: PDB Molecule:ada polyprotein;
PDBTitle: nmr structure of e. coli ada protein in complex with dna
90d1sr2a_



not modelled 16.0 17
Fold:Four-helical up-and-down bundle
Superfamily:Histidine-containing phosphotransfer domain, HPT domain
Family:Sensor-like histidine kinase YojN, C-terminal domain
91c1x41A_



not modelled 15.5 20
PDB header:transcription
Chain: A: PDB Molecule:transcriptional adaptor 2-like, isoform b;
PDBTitle: solution structure of the myb-like dna binding domain of2 human transcriptional adaptor 2-like, isoform b
92d2gnxa2



not modelled 15.2 32
Fold:Gelsolin-like
Superfamily:FLJ32549 C-terminal domain-like
Family:FLJ32549 C-terminal domain-like
93c3l32B_



not modelled 14.3 28
PDB header:viral protein
Chain: B: PDB Molecule:phosphoprotein;
PDBTitle: structure of the dimerisation domain of the rabies virus2 phosphoprotein
94c4zp0A_



not modelled 13.6 14
PDB header:transport protein
Chain: A: PDB Molecule:multidrug transporter mdfa;
PDBTitle: crystal structure of e. coli multidrug transporter mdfa in complex2 with deoxycholate
95c4eefI_



not modelled 12.3 33
PDB header:immune system/inhibitor
Chain: I: PDB Molecule:f-hb80.4, designed hemagglutinin binding protein;
PDBTitle: crystal structure of the designed inhibitor protein f-hb80.4 in2 complex with the 1918 influenza virus hemagglutinin.
96d1wn0a1



not modelled 11.7 17
Fold:Four-helical up-and-down bundle
Superfamily:Histidine-containing phosphotransfer domain, HPT domain
Family:Phosphorelay protein-like
97c3hugJ_



not modelled 11.5 22
PDB header:transcription/membrane protein
Chain: J: PDB Molecule:probable conserved membrane protein;
PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl
98c2mpnA_



not modelled 11.3 20
PDB header:membrane protein
Chain: A: PDB Molecule:inner membrane protein ygap;
PDBTitle: 3d nmr structure of the transmembrane domain of the full-length inner2 membrane protein ygap from escherichia coli
99c2mpnB_



not modelled 11.3 20
PDB header:membrane protein
Chain: B: PDB Molecule:inner membrane protein ygap;
PDBTitle: 3d nmr structure of the transmembrane domain of the full-length inner2 membrane protein ygap from escherichia coli

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