Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0204c_(-)_241976_243214
DateTue Jul 23 14:50:26 BST 2019
Unique Job IDcdb52a5bd69b9f74
SequenceVSHDAPARNL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:41.694 Y:38.503 Z:59.938
Model (left) based on template c4ky0B_
Top template information
PDB header:transport protein, membrane protein
Chain: B: PDB Molecule:proton/glutamate symporter, sdf family;
PDBTitle: crystal structure of a substrate-free glutamate transporter homologue2 from thermococcus kodakarensis
Confidence and coverage
Confidence: 69.2% Coverage: 50%
205 residues ( 50% of your sequence) have been modelled with 69.2% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4ky0B_
69.2 19
PDB header:transport protein, membrane protein
Chain: B: PDB Molecule:proton/glutamate symporter, sdf family;
PDBTitle: crystal structure of a substrate-free glutamate transporter homologue2 from thermococcus kodakarensis
2c6gctA_
63.4 13
PDB header:membrane protein
Chain: A: PDB Molecule:neutral amino acid transporter b(0);
PDBTitle: cryo-em structure of the human neutral amino acid transporter asct2
3c5nf2A_
51.9 16
PDB header:cell adhesion
Chain: A: PDB Molecule:minor fimbrium subunit mfa1;
PDBTitle: the fimbrial shaft protein mfa1 from porphyromonas gingivalis
4c2c2xB_
51.1 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:methylenetetrahydrofolate dehydrogenase-
PDBTitle: three dimensional structure of bifunctional methylenetetrahydrofolate2 dehydrogenase-cyclohydrolase from mycobacterium tuberculosis
5c4a5oB_
49.6 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:bifunctional protein fold;
PDBTitle: crystal structure of pseudomonas aeruginosa n5, n10-2 methylenetetrahydrofolate dehydrogenase-cyclohydrolase (fold)
6c5zf1A_
49.3 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:5,10-methylenetetrahydrofolate dehydrogenase;
PDBTitle: molecular structure of a novel 5,10-methylenetetrahydrofolate2 dehydrogenase from the silkworm, bombyx mori
7c4cjxA_
48.4 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:c-1-tetrahydrofolate synthase, cytoplasmic, putative;
PDBTitle: the crystal structure of trypanosoma brucei n5, n10-2 methylenetetrahydrofolate dehydrogenase-cyclohydrolase (fold)3 complexed with nadp cofactor and inhibitor
8c3p2oA_
48.0 24
PDB header:oxidoreductase, hydrolase
Chain: A: PDB Molecule:bifunctional protein fold;
PDBTitle: crystal structure of fold bifunctional protein from campylobacter2 jejuni
9c3p2oB_
47.6 24
PDB header:oxidoreductase, hydrolase
Chain: B: PDB Molecule:bifunctional protein fold;
PDBTitle: crystal structure of fold bifunctional protein from campylobacter2 jejuni
10c3l07B_
47.6 24
PDB header:oxidoreductase,hydrolase
Chain: B: PDB Molecule:bifunctional protein fold;
PDBTitle: methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate2 cyclohydrolase, putative bifunctional protein fold from francisella3 tularensis.
11c1b0aA_
47.2 24
PDB header:oxidoreductase,hydrolase
Chain: A: PDB Molecule:protein (fold bifunctional protein);
PDBTitle: 5,10, methylene-tetrahydropholate2 dehydrogenase/cyclohydrolase from e coli.
12c6apeA_
47.0 24
PDB header:oxidoreductase, hydrolase
Chain: A: PDB Molecule:bifunctional protein fold;
PDBTitle: crystal structure of bifunctional protein fold from helicobacter2 pylori
13c4b4uB_
46.5 18
PDB header:oxidoreductase
Chain: B: PDB Molecule:bifunctional protein fold;
PDBTitle: crystal structure of acinetobacter baumannii n5,2 n10-methylenetetrahydrofolate dehydrogenase-cyclohydrolase (fold)3 complexed with nadp cofactor
14c4a26B_
46.2 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative c-1-tetrahydrofolate synthase, cytoplasmic;
PDBTitle: the crystal structure of leishmania major n5,n10-2 methylenetetrahydrofolate dehydrogenase/cyclohydrolase
15c5tc4A_
46.0 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:bifunctional methylenetetrahydrofolate
PDBTitle: crystal structure of human mitochondrial methylenetetrahydrofolate2 dehydrogenase-cyclohydrolase (mthfd2) in complex with ly345899 and3 cofactors
16d1l3ac_
45.1 16
Fold:ssDNA-binding transcriptional regulator domain
Superfamily:ssDNA-binding transcriptional regulator domain
Family:Plant transcriptional regulator PBF-2
17c2lnhC_
41.5 28
PDB header:signaling protein/protein binding
Chain: C: PDB Molecule:secreted effector protein espf(u);
PDBTitle: enterohaemorrhagic e. coli (ehec) exploits a tryptophan switch to2 hijack host f-actin assembly
18d1b0aa1
41.2 24
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Aminoacid dehydrogenase-like, C-terminal domain
19c5nhsB_
40.5 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:bifunctional protein fold;
PDBTitle: the crystal structure of xanthomonas albilineans n5, n10-2 methylenetetrahydrofolate dehydrogenase-cyclohydrolase (fold)
20d1a4ia1
38.5 25
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Aminoacid dehydrogenase-like, C-terminal domain
21c1a4iB_
not modelled 38.4 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:methylenetetrahydrofolate dehydrogenase /
PDBTitle: human tetrahydrofolate dehydrogenase / cyclohydrolase
22c3nglA_
not modelled 34.5 29
PDB header:oxidoreductase, hydrolase
Chain: A: PDB Molecule:bifunctional protein fold;
PDBTitle: crystal structure of bifunctional 5,10-methylenetetrahydrofolate2 dehydrogenase / cyclohydrolase from thermoplasma acidophilum
23c4djiA_
not modelled 29.9 4
PDB header:transport protein
Chain: A: PDB Molecule:probable glutamate/gamma-aminobutyrate antiporter;
PDBTitle: structure of glutamate-gaba antiporter gadc
24c5mdxt_
not modelled 24.2 24
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: cryo-em structure of the psii supercomplex from arabidopsis thaliana
25c5mdxT_
not modelled 24.2 24
PDB header:photosynthesis
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: cryo-em structure of the psii supercomplex from arabidopsis thaliana
26c3jcut_
not modelled 24.0 24
PDB header:membrane protein
Chain: T: PDB Molecule:photosystem ii reaction center protein tc;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
27c3jcuT_
not modelled 24.0 24
PDB header:membrane protein
Chain: T: PDB Molecule:photosystem ii reaction center protein tc;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
28c5xnmT_
not modelled 16.0 30
PDB header:membrane protein
Chain: T: PDB Molecule:photosystem ii reaction center protein t;
PDBTitle: structure of unstacked c2s2m2-type psii-lhcii supercomplex from pisum2 sativum
29c2rddB_
not modelled 13.8 14
PDB header:membrane protein/transport protein
Chain: B: PDB Molecule:upf0092 membrane protein yajc;
PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix.
30c5lc5d_
not modelled 13.3 17
PDB header:oxidoreductase
Chain: D: PDB Molecule:nadh dehydrogenase [ubiquinone] iron-sulfur protein 2,
PDBTitle: structure of mammalian respiratory complex i, class2
31c5ldwd_
not modelled 13.3 17
PDB header:oxidoreductase
Chain: D: PDB Molecule:nadh dehydrogenase [ubiquinone] iron-sulfur protein 2,
PDBTitle: structure of mammalian respiratory complex i, class1
32c5ldxd_
not modelled 13.3 17
PDB header:oxidoreductase
Chain: D: PDB Molecule:nadh dehydrogenase [ubiquinone] iron-sulfur protein 2,
PDBTitle: structure of mammalian respiratory complex i, class3.
33c6hwhb_
not modelled 11.2 19
PDB header:electron transport
Chain: B: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
34c4a54B_
not modelled 11.0 31
PDB header:rna binding protein/hydrolase
Chain: B: PDB Molecule:mrna decapping complex subunit 2;
PDBTitle: structural basis of the dcp1:dcp2 mrna decapping complex activation2 by edc3 and scd6
35c6hwhX_
not modelled 11.0 8
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
36c3u02C_
not modelled 10.1 16
PDB header:transcription
Chain: C: PDB Molecule:putative transcription-associated protein tfiis;
PDBTitle: crystal structure of the trna modifier tias from pyrococcus furiosus,2 northeast structural genomics consortium target pfr225
37d1ydha_
not modelled 9.3 44
Fold:MCP/YpsA-like
Superfamily:MCP/YpsA-like
Family:MoCo carrier protein-like
38c2q4dB_
not modelled 9.2 44
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:lysine decarboxylase-like protein at5g11950;
PDBTitle: ensemble refinement of the crystal structure of a lysine2 decarboxylase-like protein from arabidopsis thaliana gene at5g11950
39c5zbjA_
not modelled 9.0 56
PDB header:hydrolase
Chain: A: PDB Molecule:putative cytokinin riboside 5'-monophosphate
PDBTitle: crystal strcuture of type-i log from pseudomonas aeruginosa pao1
40d1t35a_
not modelled 8.7 44
Fold:MCP/YpsA-like
Superfamily:MCP/YpsA-like
Family:MoCo carrier protein-like
41c2l2iB_
not modelled 8.6 45
PDB header:transcription
Chain: B: PDB Molecule:krueppel-like factor 1;
PDBTitle: nmr structure of the complex between the tfb1 subunit of tfiih and the2 activation domain of eklf
42c5itsD_
not modelled 8.5 56
PDB header:hydrolase
Chain: D: PDB Molecule:cytokinin riboside 5'-monophosphate phosphoribohydrolase;
PDBTitle: crystal strcuture of log from corynebacterium glutamicum
43c2q4oA_
not modelled 8.4 44
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein at2g37210/t2n18.3;
PDBTitle: ensemble refinement of the crystal structure of a lysine2 decarboxylase-like protein from arabidopsis thaliana gene at2g37210
44d2q4oa1
not modelled 8.4 44
Fold:MCP/YpsA-like
Superfamily:MCP/YpsA-like
Family:MoCo carrier protein-like
45c5aezA_
not modelled 8.4 15
PDB header:membrane protein
Chain: A: PDB Molecule:mep2;
PDBTitle: crystal structure of candida albicans mep2
46c6cfwI_
not modelled 7.5 9
PDB header:membrane protein
Chain: I: PDB Molecule:mbh subunit;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
47c3aygA_
not modelled 7.5 7
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitric oxide reductase;
PDBTitle: crystal structure of nitric oxide reductase complex with hqno
48d2r6gf1
not modelled 7.4 23
Fold:MalF N-terminal region-like
Superfamily:MalF N-terminal region-like
Family:MalF N-terminal region-like
49d2nwwa1
not modelled 7.4 18
Fold:Proton glutamate symport protein
Superfamily:Proton glutamate symport protein
Family:Proton glutamate symport protein
50d1m6ya1
not modelled 7.4 14
Fold:SAM domain-like
Superfamily:Putative methyltransferase TM0872, insert domain
Family:Putative methyltransferase TM0872, insert domain
51c6gwsD_
not modelled 7.4 35
PDB header:replication
Chain: D: PDB Molecule:pcna-associated factor;
PDBTitle: crystal structure of human pcna in complex with three p15 peptides
52c6gwsE_
not modelled 7.4 35
PDB header:replication
Chain: E: PDB Molecule:pcna-associated factor;
PDBTitle: crystal structure of human pcna in complex with three p15 peptides
53c5xpdA_
not modelled 7.3 13
PDB header:transport protein
Chain: A: PDB Molecule:sugar transporter;
PDBTitle: sugar transporter of atsweet13 in inward-facing state with a substrate2 analog
54c4mt1A_
not modelled 7.2 9
PDB header:membrane protein, tranport protein
Chain: A: PDB Molecule:drug efflux protein;
PDBTitle: crystal structure of the neisseria gonorrhoeae mtrd inner membrane2 multidrug efflux pump
55c5twvG_
not modelled 7.2 21
PDB header:transport protein
Chain: G: PDB Molecule:atp-sensitive inward rectifier potassium channel 11;
PDBTitle: cryo-em structure of the pancreatic atp-sensitive k+ channel2 sur1/kir6.2 in the presence of atp and glibenclamide
56c5ajtA_
not modelled 7.1 33
PDB header:hydrolase
Chain: A: PDB Molecule:phosphoribohydrolase lonely guy;
PDBTitle: crystal structure of ligand-free phosphoribohydrolase lonely guy from2 claviceps purpurea
57d2g7la2
not modelled 7.0 28
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
58d1wg8a1
not modelled 7.0 6
Fold:SAM domain-like
Superfamily:Putative methyltransferase TM0872, insert domain
Family:Putative methyltransferase TM0872, insert domain
59c6nbxG_
not modelled 6.4 14
PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-quinone oxidoreductase subunit j;
PDBTitle: t.elongatus ndh (data-set 2)
60c5a63D_
not modelled 6.3 22
PDB header:hydrolase
Chain: D: PDB Molecule:gamma-secretase subunit pen-2;
PDBTitle: cryo-em structure of the human gamma-secretase complex at 3.4 angstrom2 resolution.
61d1ikpa2
not modelled 6.3 29
Fold:ADP-ribosylation
Superfamily:ADP-ribosylation
Family:ADP-ribosylating toxins
62c4d2gD_
not modelled 6.1 35
PDB header:transcription
Chain: D: PDB Molecule:p15;
PDBTitle: crystal structure of human pcna in complex with p15 peptide
63c4d2gE_
not modelled 6.1 35
PDB header:transcription
Chain: E: PDB Molecule:p15;
PDBTitle: crystal structure of human pcna in complex with p15 peptide
64c1vjqB_
not modelled 6.1 26
PDB header:structural genomics, de novo protein
Chain: B: PDB Molecule:designed protein;
PDBTitle: designed protein based on backbone conformation of2 procarboxypeptidase-a (1aye) with sidechains chosen for maximal3 predicted stability.
65d1h6pa_
not modelled 6.1 21
Fold:Telomeric repeat binding factor (TRF) dimerisation domain
Superfamily:Telomeric repeat binding factor (TRF) dimerisation domain
Family:Telomeric repeat binding factor (TRF) dimerisation domain
66c5l6nI_
not modelled 5.9 42
PDB header:hydrolase
Chain: I: PDB Molecule:thrombin inhibitor madanin 1;
PDBTitle: disulfated madanin-thrombin complex
67c2rflB_
not modelled 5.9 18
PDB header:hydrolase, isomerase
Chain: B: PDB Molecule:putative phosphohistidine phosphatase sixa;
PDBTitle: crystal structure of the putative phosphohistidine phosphatase sixa2 from agrobacterium tumefaciens
68c2mfrA_
not modelled 5.7 21
PDB header:transferase
Chain: A: PDB Molecule:insulin receptor;
PDBTitle: solution structure of the transmembrane domain of the insulin receptor2 in micelles
69d1nmla1
not modelled 5.7 23
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Di-heme cytochrome c peroxidase
70c6c6lO_
not modelled 5.6 24
PDB header:membrane protein
Chain: O: PDB Molecule:v-type proton atpase subunit f;
PDBTitle: yeast vacuolar atpase vo in lipid nanodisc
71c5wq3A_
not modelled 5.6 33
PDB header:hydrolase
Chain: A: PDB Molecule:cytokinin riboside 5'-monophosphate phosphoribohydrolase;
PDBTitle: crystal strcuture of type-ii log from corynebacterium glutamicum
72d1x7da_
not modelled 5.5 14
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Ornithine cyclodeaminase-like
73c3syaA_
not modelled 5.5 19
PDB header:metal transport
Chain: A: PDB Molecule:g protein-activated inward rectifier potassium channel 2;
PDBTitle: crystal structure of the g protein-gated inward rectifier k+ channel2 girk2 (kir3.2) in complex with sodium and pip2
74c5lnko_
not modelled 5.5 13
PDB header:oxidoreductase
Chain: O: PDB Molecule:
PDBTitle: entire ovine respiratory complex i
75c2c9kA_
not modelled 5.5 19
PDB header:toxin
Chain: A: PDB Molecule:pesticidal crystal protein cry4aa;
PDBTitle: structure of the functional form of the mosquito-larvicidal2 cry4aa toxin from bacillus thuringiensis at 2.8 a3 resolution
76c2i5nH_
not modelled 5.5 24
PDB header:photosynthesis
Chain: H: PDB Molecule:reaction center protein h chain;
PDBTitle: 1.96 a x-ray structure of photosynthetic reaction center from2 rhodopseudomonas viridis:crystals grown by microfluidic technique
77d2vkva2
not modelled 5.3 19
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
78d1pw4a_
not modelled 5.2 12
Fold:MFS general substrate transporter
Superfamily:MFS general substrate transporter
Family:Glycerol-3-phosphate transporter
79d1o5ha_
not modelled 5.2 44
Fold:Methenyltetrahydrofolate cyclohydrolase-like
Superfamily:Methenyltetrahydrofolate cyclohydrolase-like
Family:Methenyltetrahydrofolate cyclohydrolase-like

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below