Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0205_(-)_243384_244487
DateTue Jul 23 14:50:26 BST 2019
Unique Job ID46d05e8c1434932b
SequenceMSASLDDASV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:21.220 Y:24.413 Z:21.676
Model (left) based on template c3x0uB_
Top template information
PDB header:toxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of pirb
Confidence and coverage
Confidence: 42.6% Coverage: 8%
31 residues ( 8% of your sequence) have been modelled with 42.6% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3x0uB_



42.6 19
PDB header:toxin
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of pirb
2c3zljC_



36.1 35
PDB header:dna binding protein/dna
Chain: C: PDB Molecule:dna mismatch repair protein muts;
PDBTitle: crystal structure of full-length e.coli dna mismatch repair protein2 muts d835r mutant in complex with gt mismatched dna
3c3zljD_



35.5 35
PDB header:dna binding protein/dna
Chain: D: PDB Molecule:dna mismatch repair protein muts;
PDBTitle: crystal structure of full-length e.coli dna mismatch repair protein2 muts d835r mutant in complex with gt mismatched dna
4d1ppjc2



14.6 15
Fold:Heme-binding four-helical bundle
Superfamily:Transmembrane di-heme cytochromes
Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
5c2kncA_



11.8 14
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
6d1kkxa_



11.5 12
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:ARID-like
Family:ARID domain
7c6caaA_



11.5 19
PDB header:transport protein
Chain: A: PDB Molecule:electrogenic sodium bicarbonate cotransporter 1;
PDBTitle: cryoem structure of human slc4a4 sodium-coupled acid-base transporter2 nbce1
8c6cb6A_



10.8 18
PDB header:viral protein
Chain: A: PDB Molecule:protein a6;
PDBTitle: crystal structure of vaccinia virus a6 n-terminus (space group c2)
9c6hwhR_



10.2 26
PDB header:electron transport
Chain: R: PDB Molecule:msmeg_4693;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
10d1bccc3



9.1 14
Fold:Heme-binding four-helical bundle
Superfamily:Transmembrane di-heme cytochromes
Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
11c6adqI_



8.6 26
PDB header:electron transport
Chain: I: PDB Molecule:cytochrome c oxidase subunit ctaj;
PDBTitle: respiratory complex ciii2civ2sod2 from mycobacterium smegmatis
12c3cwbC_



8.1 13
PDB header:oxidoreductase
Chain: C: PDB Molecule:cytochrome b;
PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d
13c3j8bF_



7.9 42
PDB header:translation
Chain: F: PDB Molecule:eukaryotic translation initiation factor 3 subunit f;
PDBTitle: model of the human eif3 pci-mpn octamer docked into the 43s-hcv ires2 em map
14c3j8cF_



7.9 42
PDB header:translation
Chain: F: PDB Molecule:eukaryotic translation initiation factor 3 subunit f;
PDBTitle: model of the human eif3 pci-mpn octamer docked into the 43s em map
15c3j7kF_



7.9 42
PDB header:translation
Chain: F: PDB Molecule:eukaryotic translation initiation factor 3 subunit f;
PDBTitle: model of the human eif3 pci-mpn octamer docked into the 43s em map
16c3j7jF_



7.9 42
PDB header:translation
Chain: F: PDB Molecule:eukaryotic translation initiation factor 3 subunit f;
PDBTitle: model of the human eif3 pci-mpn octamer docked into the 43s-hcv ires2 em map
17c5sv9B_



7.3 9
PDB header:transport protein
Chain: B: PDB Molecule:bor1p boron transporter;
PDBTitle: structure of the slc4 transporter bor1p in an inward-facing2 conformation
18c6hu9t_



7.3 32
PDB header:oxidoreductase/electron transport
Chain: T: PDB Molecule:cytochrome b-c1 complex subunit 9;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
19c4j72B_



7.1 18
PDB header:transferase
Chain: B: PDB Molecule:phospho-n-acetylmuramoyl-pentapeptide-transferase;
PDBTitle: crystal structure of polyprenyl-phosphate n-acetyl hexosamine 1-2 phosphate transferase
20c2l8sA_



6.5 23
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-1;
PDBTitle: solution nmr structure of transmembrane and cytosolic regions of2 integrin alpha1 in detergent micelles
21d3cx5c2



not modelled 6.1 17
Fold:Heme-binding four-helical bundle
Superfamily:Transmembrane di-heme cytochromes
Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
22c4p6vB_



not modelled 6.1 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:na(+)-translocating nadh-quinone reductase subunit b;
PDBTitle: crystal structure of the na+-translocating nadh: ubiquinone2 oxidoreductase from vibrio cholerae
23c2ww9B_



not modelled 5.8 26
PDB header:ribosome
Chain: B: PDB Molecule:protein transport protein sss1;
PDBTitle: cryo-em structure of the active yeast ssh1 complex bound to the yeast2 80s ribosome
24c2qjkM_



not modelled 5.7 13
PDB header:electron transport
Chain: M: PDB Molecule:cytochrome b;
PDBTitle: crystal structure analysis of mutant rhodobacter2 sphaeroides bc1 with stigmatellin and antimycin
25c6o7xa_



not modelled 5.5 13
PDB header:membrane protein
Chain: A: PDB Molecule:vacuolar atp synthase catalytic subunit a;
PDBTitle: saccharomyces cerevisiae v-atpase stv1-v1vo state 3
26c2lcyA_



not modelled 5.5 44
PDB header:viral protein
Chain: A: PDB Molecule:virion spike glycoprotein;
PDBTitle: nmr structure of the complete internal fusion loop from ebolavirus gp22 at ph 5.5
27c5d92B_



not modelled 5.5 8
PDB header:membrane protein
Chain: B: PDB Molecule:af2299 protein,phosphatidylinositol synthase;
PDBTitle: structure of a phosphatidylinositolphosphate (pip) synthase from2 renibacterium salmoninarum
28c2oarA_



not modelled 5.4 11
PDB header:membrane protein
Chain: A: PDB Molecule:large-conductance mechanosensitive channel;
PDBTitle: mechanosensitive channel of large conductance (mscl)
29d2e74a1



not modelled 5.2 15
Fold:Heme-binding four-helical bundle
Superfamily:Transmembrane di-heme cytochromes
Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below