Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD0207c_(-)_247384_248112
DateTue Jul 23 14:50:26 BST 2019
Unique Job IDd8c1ec196315dff8
SequenceMSLTEDVTSQ ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:42.230 Y:40.548 Z:40.286
Model (left) based on template c2qipA_
Top template information
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein of unknown function vpa0982;
PDBTitle: crystal structure of a protein of unknown function vpa0982 from vibrio2 parahaemolyticus rimd 2210633
Confidence and coverage
Confidence: 99.9% Coverage: 60%
145 residues ( 60% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2qipA_
99.9 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein of unknown function vpa0982;
PDBTitle: crystal structure of a protein of unknown function vpa0982 from vibrio2 parahaemolyticus rimd 2210633
2c5yaaD_
99.6 17
PDB header:hydrolase
Chain: D: PDB Molecule:meiosis regulator and mrna stability factor 1;
PDBTitle: crystal structure of marf1 nyn domain from mus musculus
3d2jgra1
96.6 17
Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:Diacylglycerol kinase-like
4c2bonB_
96.2 17
PDB header:transferase
Chain: B: PDB Molecule:lipid kinase;
PDBTitle: structure of an escherichia coli lipid kinase (yegs)
5d2bona1
96.0 17
Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:Diacylglycerol kinase-like
6d2p1ra1
95.9 17
Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:Diacylglycerol kinase-like
7d2qv7a1
95.7 18
Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:Diacylglycerol kinase-like
8c2qv7A_
94.7 13
PDB header:transferase
Chain: A: PDB Molecule:diacylglycerol kinase dgkb;
PDBTitle: crystal structure of diacylglycerol kinase dgkb in complex with adp2 and mg
9c3s40C_
93.5 8
PDB header:transferase
Chain: C: PDB Molecule:diacylglycerol kinase;
PDBTitle: the crystal structure of a diacylglycerol kinases from bacillus2 anthracis str. sterne
10d1tfra2
93.4 26
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
11c4rxuA_
92.8 18
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic sugar-binding protein;
PDBTitle: crystal structure of carbohydrate transporter solute binding protein2 caur_1924 from chloroflexus aurantiacus, target efi-511158, in3 complex with d-glucose
12c3uugB_
92.7 23
PDB header:sugar binding protein
Chain: B: PDB Molecule:multiple sugar-binding periplasmic receptor chve;
PDBTitle: crystal structure of the periplasmic sugar binding protein chve
13c5ocpA_
91.8 11
PDB header:sugar binding protein
Chain: A: PDB Molecule:periplasmic binding protein/laci transcriptional regulator;
PDBTitle: the periplasmic binding protein component of the arabinose abc2 transporter from shewanella sp. ana-3 bound to alpha and beta-l-3 arabinofuranose
14c4kzkA_
91.6 13
PDB header:sugar binding protein
Chain: A: PDB Molecule:l-arabinose abc transporter, periplasmic l-arabinose-
PDBTitle: the structure of the periplasmic l-arabinose binding protein from2 burkholderia thailandensis
15c4wwhA_
91.2 21
PDB header:transport protein
Chain: A: PDB Molecule:abc transporter;
PDBTitle: crystal structure of an abc transporter solute binding protein2 (ipr025997) from mycobacterium smegmatis (msmeg_1704, target efi-3 510967) with bound d-galactose
16c4werA_
91.1 16
PDB header:transferase
Chain: A: PDB Molecule:diacylglycerol kinase catalytic domain protein;
PDBTitle: crystal structure of diacylglycerol kinase catalytic domain protein2 from enterococcus faecalis v583
17c4y9tA_
90.7 18
PDB header:solute-binding protein
Chain: A: PDB Molecule:abc transporter, solute binding protein;
PDBTitle: crystal structure of an abc transporter solute binding protein2 (ipr025997) from agrobacterium vitis s4 (avi_5305, target efi-511224)3 with bound alpha-d-glucosamine
18c3vzdB_
90.6 18
PDB header:transferase/inhibitor
Chain: B: PDB Molecule:sphingosine kinase 1;
PDBTitle: crystal structure of sphingosine kinase 1 with inhibitor and adp
19c3d8tB_
90.1 18
PDB header:lyase
Chain: B: PDB Molecule:uroporphyrinogen-iii synthase;
PDBTitle: thermus thermophilus uroporphyrinogen iii synthase
20c6dspB_
89.6 18
PDB header:signaling protein
Chain: B: PDB Molecule:autoinducer 2-binding protein lsrb;
PDBTitle: lsrb from clostridium saccharobutylicum in complex with ai-2
21c2dc1A_
not modelled 89.1 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:l-aspartate dehydrogenase;
PDBTitle: crystal structure of l-aspartate dehydrogenase from2 hyperthermophilic archaeon archaeoglobus fulgidus
22c6hyhA_
not modelled 88.8 13
PDB header:sugar binding protein
Chain: A: PDB Molecule:periplasmic binding protein/laci transcriptional regulator;
PDBTitle: crystal structure of msmeg_1712 from mycobacterium smegmatis in2 complex with beta-d-fucofuranose
23c3brsA_
not modelled 88.5 14
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic binding protein/laci transcriptional regulator;
PDBTitle: crystal structure of sugar transporter from clostridium2 phytofermentans
24c4es6A_
not modelled 87.9 12
PDB header:lyase
Chain: A: PDB Molecule:uroporphyrinogen-iii synthase;
PDBTitle: crystal structure of hemd (pa5259) from pseudomonas aeruginosa (pao1)2 at 2.22 a resolution
25c2ihnA_
not modelled 87.4 27
PDB header:hydrolase/dna
Chain: A: PDB Molecule:ribonuclease h;
PDBTitle: co-crystal of bacteriophage t4 rnase h with a fork dna2 substrate
26c5ulbA_
not modelled 86.8 11
PDB header:sugar binding protein
Chain: A: PDB Molecule:putative sugar abc transporter;
PDBTitle: crystal structure of sugar abc transporter from yersinia2 enterocolitica subsp. enterocolitica 8081
27c3mw8A_
not modelled 86.8 11
PDB header:lyase
Chain: A: PDB Molecule:uroporphyrinogen-iii synthase;
PDBTitle: crystal structure of an uroporphyrinogen-iii synthase (sama_3255) from2 shewanella amazonensis sb2b at 1.65 a resolution
28d2d59a1
not modelled 86.6 15
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
29d1cmwa2
not modelled 86.1 22
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
30d1jr2a_
not modelled 84.8 13
Fold:HemD-like
Superfamily:HemD-like
Family:HemD-like
31c1jr2A_
not modelled 84.8 13
PDB header:lyase
Chain: A: PDB Molecule:uroporphyrinogen-iii synthase;
PDBTitle: structure of uroporphyrinogen iii synthase
32c4n03A_
not modelled 84.6 19
PDB header:transport protein
Chain: A: PDB Molecule:abc-type branched-chain amino acid transport systems
PDBTitle: fatty acid abc transporter substrate-binding protein from2 thermomonospora curvata
33c3g1wB_
not modelled 83.4 11
PDB header:transport protein
Chain: B: PDB Molecule:sugar abc transporter;
PDBTitle: crystal structure of sugar abc transporter (sugar-binding protein)2 from bacillus halodurans
34d1wd7a_
not modelled 83.4 17
Fold:HemD-like
Superfamily:HemD-like
Family:HemD-like
35c4ry0A_
not modelled 82.9 14
PDB header:transport protein
Chain: A: PDB Molecule:probable ribose abc transporter, substrate-binding protein;
PDBTitle: crystal structure of ribose transporter solute binding protein2 rhe_pf00037 from rhizobium etli cfn 42, target efi-511357, in complex3 with d-ribose
36c4irxA_
not modelled 82.2 17
PDB header:transport protein
Chain: A: PDB Molecule:sugar abc transporter, periplasmic sugar-binding protein;
PDBTitle: crystal structure of caulobacter myo-inositol binding protein bound to2 myo-inositol
37c2vk2A_
not modelled 82.2 11
PDB header:transport protein
Chain: A: PDB Molecule:abc transporter periplasmic-binding protein ytfq;
PDBTitle: crystal structure of a galactofuranose binding protein
38c5bq3A_
not modelled 82.1 23
PDB header:transport protein
Chain: A: PDB Molecule:rhamnose abc transporter, rhamnose-binding protein;
PDBTitle: crystal structure of a sugar abc transporter (actodo_00688) from2 actinomyces odontolyticus atcc 17982 at 2.60 a resolution
39c3lopA_
not modelled 82.0 13
PDB header:substrate binding protein
Chain: A: PDB Molecule:substrate binding periplasmic protein;
PDBTitle: crystal structure of substrate-binding periplasmic protein2 (pbp) from ralstonia solanacearum
40c5hsgA_
not modelled 81.9 17
PDB header:transport protein
Chain: A: PDB Molecule:putative abc transporter, nucleotide binding/atpase
PDBTitle: crystal structure of an abc transporter solute binding protein from2 klebsiella pneumoniae (kpn_01730, target efi-511059), apo open3 structure
41c1cmwA_
not modelled 81.7 19
PDB header:transferase
Chain: A: PDB Molecule:protein (dna polymerase i);
PDBTitle: crystal structure of taq dna-polymerase shows a new orientation for2 the structure-specific nuclease domain
42d1guda_
not modelled 81.0 12
Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
43c4m88A_
not modelled 80.1 9
PDB header:transport protein
Chain: A: PDB Molecule:extracellular ligand-binding receptor;
PDBTitle: crystal structure of extracellular ligand-binding receptor from2 verminephrobacter eiseniae ef01-2
44d3dhxa1
not modelled 79.9 20
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:NIL domain-like
45d2qrra1
not modelled 79.7 20
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:NIL domain-like
46d2liva_
not modelled 79.2 15
Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
47c4yleA_
not modelled 78.9 12
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic binding protein/laci transcriptional regulator;
PDBTitle: crystal structure of an abc transpoter solute binding protein2 (ipr025997) from burkholderia multivorans (bmul_1631, target efi-3 511115) with an unknown ligand modelled as alpha-d-erythrofuranose
48c4yhsA_
not modelled 78.7 12
PDB header:solute-binding protein
Chain: A: PDB Molecule:monosaccharide abc transporter substrate-binding protein,
PDBTitle: crystal structure of an abc transporter solute binding protein2 (ipr025997) from bradyrhizobium sp. btai1 (bbta_2440, target efi-3 511490) with bound bis-tris
49c5dkvD_
not modelled 78.2 18
PDB header:sugar binding protein
Chain: D: PDB Molecule:abc transporter substrate binding protein (ribose);
PDBTitle: crystal structure of an abc transporter solute binding protein from2 agrobacterium vitis(avis_5339, target efi-511225) bound with alpha-d-3 tagatopyranose
50c3n0wA_
not modelled 77.6 12
PDB header:transport protein
Chain: A: PDB Molecule:abc branched chain amino acid family transporter,
PDBTitle: crystal structure of a branched chain amino acid abc transporter2 periplasmic ligand-binding protein (bxe_c0949) from burkholderia3 xenovorans lb400 at 1.88 a resolution
51d1xo1a2
not modelled 77.4 31
Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
52c3re1B_
not modelled 76.8 15
PDB header:lyase
Chain: B: PDB Molecule:uroporphyrinogen-iii synthetase;
PDBTitle: crystal structure of uroporphyrinogen iii synthase from pseudomonas2 syringae pv. tomato dc3000
53c4ry8D_
not modelled 76.6 11
PDB header:transport protein
Chain: D: PDB Molecule:periplasmic binding protein;
PDBTitle: crystal structure of 5-methylthioribose transporter solute binding2 protein tlet_1677 from thermotoga lettingae tmo target efi-511109 in3 complex with 5-methylthioribose
54d2dria_
not modelled 76.0 14
Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
55c4z0nA_
not modelled 75.7 11
PDB header:transcription
Chain: A: PDB Molecule:periplasmic binding protein/laci transcriptional regulator;
PDBTitle: crystal structure of a periplasmic solute binding protein (ipr025997)2 from streptobacillus moniliformis dsm-12112 (smon_0317, target efi-3 511281) with bound d-galactose
56d8abpa_
not modelled 75.3 17
Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
57c6gq0A_
not modelled 74.1 11
PDB header:sugar binding protein
Chain: A: PDB Molecule:putative sugar binding protein;
PDBTitle: crystal structure of ganp, a glucose-galactose binding protein from2 geobacillus stearothermophilus
58c3ma0A_
not modelled 73.8 17
PDB header:sugar binding protein
Chain: A: PDB Molecule:d-xylose-binding periplasmic protein;
PDBTitle: closed liganded crystal structure of xylose binding protein from2 escherichia coli
59c2qbuA_
not modelled 73.1 9
PDB header:transferase
Chain: A: PDB Molecule:precorrin-2 methyltransferase;
PDBTitle: crystal structure of methanothermobacter thermautotrophicus cbil
60c4rs3A_
not modelled 72.9 11
PDB header:transport protein
Chain: A: PDB Molecule:abc transporter, carbohydrate uptake transporter-2 (cut2)
PDBTitle: crystal structure of carbohydrate transporter a0qyb3 from2 mycobacterium smegmatis str. mc2 155, target efi-510969, in complex3 with xylitol
61d1a9xb2
not modelled 72.7 14
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
62d1usga_
not modelled 72.4 13
Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
63c4jc0B_
not modelled 71.8 13
PDB header:transferase
Chain: B: PDB Molecule:ribosomal protein s12 methylthiotransferase rimo;
PDBTitle: crystal structure of thermotoga maritima holo rimo in complex with2 pentasulfide, northeast structural genomics consortium target vr77
64c4ry9A_
not modelled 71.4 14
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic binding protein/laci transcriptional regulator;
PDBTitle: crystal structure of carbohydrate transporter solute binding protein2 veis_2079 from verminephrobacter eiseniae ef01-2, target efi-511009,3 a complex with d-talitol
65c3l6uA_
not modelled 71.1 11
PDB header:transport protein
Chain: A: PDB Molecule:abc-type sugar transport system periplasmic component;
PDBTitle: crystal structure of abc-type sugar transport system, periplasmic2 component from exiguobacterium sibiricum
66c4xfkA_
not modelled 70.7 13
PDB header:transport protein
Chain: A: PDB Molecule:putative branched chain amino acid abc transporter,
PDBTitle: crystal structure of leucine-, isoleucine-, valine-, threonine-, and2 alanine-binding protein from brucella ovis
67c3kwpA_
not modelled 70.5 14
PDB header:transferase
Chain: A: PDB Molecule:predicted methyltransferase;
PDBTitle: crystal structure of putative methyltransferase from lactobacillus2 brevis
68c4ggmX_
not modelled 70.2 19
PDB header:hydrolase
Chain: X: PDB Molecule:udp-2,3-diacylglucosamine pyrophosphatase lpxi;
PDBTitle: structure of lpxi
69d1s4da_
not modelled 70.1 20
Fold:Tetrapyrrole methylase
Superfamily:Tetrapyrrole methylase
Family:Tetrapyrrole methylase
70c4wzzA_
not modelled 70.0 17
PDB header:transport protein
Chain: A: PDB Molecule:putative sugar abc transporter, substrate-binding protein;
PDBTitle: crystal structure of an abc transporter solute binding protein2 (ipr025997) from clostridium phytofermentas (cphy_0583, target efi-3 511148) with bound l-rhamnose
71c3brqA_
not modelled 69.2 10
PDB header:transcription regulator
Chain: A: PDB Molecule:hth-type transcriptional regulator ascg;
PDBTitle: crystal structure of the escherichia coli transcriptional repressor2 ascg
72d2qswa1
not modelled 68.7 14
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:NIL domain-like
73c2rjoA_
not modelled 67.8 17
PDB header:signaling protein
Chain: A: PDB Molecule:twin-arginine translocation pathway signal protein;
PDBTitle: crystal structure of twin-arginine translocation pathway signal2 protein from burkholderia phytofirmans
74c3bblA_
not modelled 67.8 14
PDB header:regulatory protein
Chain: A: PDB Molecule:regulatory protein of laci family;
PDBTitle: crystal structure of a regulatory protein of laci family from2 chloroflexus aggregans
75c3pfnB_
not modelled 67.5 14
PDB header:transferase
Chain: B: PDB Molecule:nad kinase;
PDBTitle: crystal structure of human nad kinase
76c4wt7B_
not modelled 67.2 14
PDB header:transport protein
Chain: B: PDB Molecule:abc transporter substrate binding protein (ribose);
PDBTitle: crystal structure of an abc transporter solute binding protein2 (ipr025997) from agrobacterium vitis (avi_5165, target efi-511223)3 with bound allitol
77c5t6oA_
not modelled 67.0 22
PDB header:biosynthetic protein
Chain: A: PDB Molecule:poly-beta-hydroxybuterate polymerase;
PDBTitle: structure of the catalytic domain of the class i polyhydroxybutyrate2 synthase from cupriavidus necator
78c3eafA_
not modelled 66.9 11
PDB header:transport protein
Chain: A: PDB Molecule:abc transporter, substrate binding protein;
PDBTitle: crystal structure of abc transporter, substrate binding protein2 aeropyrum pernix
79c2iksA_
not modelled 66.5 13
PDB header:transcription
Chain: A: PDB Molecule:dna-binding transcriptional dual regulator;
PDBTitle: crystal structure of n-terminal truncated dna-binding transcriptional2 dual regulator from escherichia coli k12
80c4wutA_
not modelled 66.4 14
PDB header:transport protein
Chain: A: PDB Molecule:abc transporter substrate binding protein (ribose);
PDBTitle: crystal structure of an abc transporter solute binding protein2 (ipr025997) from agrobacterium vitis (avi_5133, target efi-511220)3 with bound d-fucose
81c3zddA_
not modelled 65.8 23
PDB header:hydrolase/dna
Chain: A: PDB Molecule:protein xni;
PDBTitle: structure of e. coli exoix in complex with the palindromic 5ov62 oligonucleotide and potassium
82c6nmiE_
not modelled 65.8 8
PDB header:transcription
Chain: E: PDB Molecule:general transcription factor iih subunit 2, p44;
PDBTitle: cryo-em structure of the human tfiih core complex
83c3dbiA_
not modelled 65.6 10
PDB header:transcription regulator
Chain: A: PDB Molecule:sugar-binding transcriptional regulator, laci family;
PDBTitle: crystal structure of sugar-binding transcriptional regulator (laci2 family) from escherichia coli complexed with phosphate
84c3o74A_
not modelled 65.4 17
PDB header:transcription
Chain: A: PDB Molecule:fructose transport system repressor frur;
PDBTitle: crystal structure of cra transcriptional dual regulator from2 pseudomonas putida
85c4joqA_
not modelled 64.8 17
PDB header:transport protein
Chain: A: PDB Molecule:abc ribose transporter, periplasmic solute-binding protein;
PDBTitle: putative ribose abc transporter, periplasmic solute-binding protein2 from rhodobacter sphaeroides
86c4rxmA_
not modelled 64.8 10
PDB header:transport protein
Chain: A: PDB Molecule:possible sugar abc superfamily atp binding cassette
PDBTitle: crystal structure of periplasmic abc transporter solute binding2 protein a7jw62 from mannheimia haemolytica phl213, target efi-511105,3 in complex with myo-inositol
87c2x7xA_
not modelled 64.5 19
PDB header:transferase
Chain: A: PDB Molecule:sensor protein;
PDBTitle: fructose binding periplasmic domain of hybrid two component system2 bt1754
88c4evrA_
not modelled 63.9 15
PDB header:transport protein
Chain: A: PDB Molecule:putative abc transporter subunit, substrate-binding
PDBTitle: crystal structure of abc transporter from r. palustris - solute2 binding protein (rpa0668) in complex with benzoate
89c4ru0B_
not modelled 63.7 18
PDB header:transport protein
Chain: B: PDB Molecule:putative branched-chain amino acid abc transporter,
PDBTitle: the crystal structure of abc transporter permease from pseudomonas2 fluorescens group
90c4yv7A_
not modelled 63.2 14
PDB header:solute-binding protein
Chain: A: PDB Molecule:periplasmic binding protein/laci transcriptional regulator;
PDBTitle: crystal structure of an abc transporter solute binding protein2 (ipr025997) from mycobacterium smegmatis (msmei_3018, target efi-3 511327) with bound glycerol
91c4pe6B_
not modelled 62.9 19
PDB header:solute-binding protein
Chain: B: PDB Molecule:putative abc transporter;
PDBTitle: crystal structure of abc transporter solute binding protein from2 thermobispora bispora dsm 43833
92c3rotA_
not modelled 62.5 11
PDB header:transport protein
Chain: A: PDB Molecule:abc sugar transporter, periplasmic sugar binding protein;
PDBTitle: crystal structure of abc sugar transporter (periplasmic sugar binding2 protein) from legionella pneumophila
93c2duwA_
not modelled 62.3 13
PDB header:ligand binding protein
Chain: A: PDB Molecule:putative coa-binding protein;
PDBTitle: solution structure of putative coa-binding protein of2 klebsiella pneumoniae
94c3ksmA_
not modelled 62.1 14
PDB header:transport protein
Chain: A: PDB Molecule:abc-type sugar transport system, periplasmic component;
PDBTitle: crystal structure of abc-type sugar transport system, periplasmic2 component from hahella chejuensis
95c4ys6A_
not modelled 61.8 18
PDB header:solute-binding protein
Chain: A: PDB Molecule:putative solute-binding component of abc transporter;
PDBTitle: crystal structure of an abc transporter solute binding protein2 (ipr025997) from clostridium phytofermentans (cphy_1585, target efi-3 511156) with bound beta-d-glucose
96c1pjtB_
not modelled 60.7 18
PDB header:transferase/oxidoreductase/lyase
Chain: B: PDB Molecule:siroheme synthase;
PDBTitle: the structure of the ser128ala point-mutant variant of cysg, the2 multifunctional methyltransferase/dehydrogenase/ferrochelatase for3 siroheme synthesis
97c4kq9A_
not modelled 60.2 15
PDB header:transport protein
Chain: A: PDB Molecule:ribose abc transporter, substrate binding protein;
PDBTitle: crystal structure of periplasmic ribose abc transporter from2 conexibacter woesei dsm 14684
98c3bd0D_
not modelled 60.2 15
PDB header:peptide binding protein
Chain: D: PDB Molecule:protein memo1;
PDBTitle: crystal structure of memo, form ii
99d1wyza1
not modelled 59.8 19
Fold:Tetrapyrrole methylase
Superfamily:Tetrapyrrole methylase
Family:Tetrapyrrole methylase
100c4yo7A_
not modelled 59.2 13
PDB header:solute binding protein
Chain: A: PDB Molecule:sugar abc transporter (sugar-binding protein);
PDBTitle: crystal structure of an abc transporter solute binding protein2 (ipr025997) from bacillus halodurans c-125 (bh2323, target efi-3 511484) with bound myo-inositol
101d1qo0a_
not modelled 59.2 12
Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
102d1u0ta_
not modelled 59.1 19
Fold:NAD kinase/diacylglycerol kinase-like
Superfamily:NAD kinase/diacylglycerol kinase-like
Family:NAD kinase-like
103c2dwcB_
not modelled 58.6 17
PDB header:transferase
Chain: B: PDB Molecule:433aa long hypothetical phosphoribosylglycinamide formyl
PDBTitle: crystal structure of probable phosphoribosylglycinamide formyl2 transferase from pyrococcus horikoshii ot3 complexed with adp
104c2l82A_
not modelled 58.5 25
PDB header:de novo protein
Chain: A: PDB Molecule:designed protein or32;
PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or32
105d1iuka_
not modelled 57.3 13
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
106c1d4cB_
not modelled 56.4 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:flavocytochrome c fumarate reductase;
PDBTitle: crystal structure of the uncomplexed form of the flavocytochrome c2 fumarate reductase of shewanella putrefaciens strain mr-1
107c3fxaA_
not modelled 56.4 15
PDB header:sugar binding protein
Chain: A: PDB Molecule:sis domain protein;
PDBTitle: crystal structure of a putative sugar-phosphate isomerase2 (lmof2365_0531) from listeria monocytogenes str. 4b f2365 at 1.60 a3 resolution
108c4pz0A_
not modelled 55.9 15
PDB header:sugar binding protein
Chain: A: PDB Molecule:sugar abc transporter, sugar-binding protein;
PDBTitle: the crystal structure of a solute binding protein from bacillus2 anthracis str. ames in complex with quorum-sensing signal3 autoinducer-2 (ai-2)
109c3gv0A_
not modelled 55.8 7
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, laci family;
PDBTitle: crystal structure of laci family transcription regulator from2 agrobacterium tumefaciens
110c3om1A_
not modelled 55.6 8
PDB header:membrane protein
Chain: A: PDB Molecule:glutamate receptor gluk5 (ka2);
PDBTitle: crystal structure of the gluk5 (ka2) atd dimer at 1.7 angstrom2 resolution
111c5xavB_
not modelled 55.5 19
PDB header:biosynthetic protein
Chain: B: PDB Molecule:intracellular polyhydroxyalkanoate synthase;
PDBTitle: structure of phac from chromobacterium sp. usm2
112d1tlfa_
not modelled 54.7 11
Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
113c4ribA_
not modelled 54.7 15
PDB header:hydrolase/dna
Chain: A: PDB Molecule:fanconi-associated nuclease 1;
PDBTitle: fan1 nuclease bound to 5' phosphorylated p(dt) single flap dna
114c5h06C_
not modelled 54.1 12
PDB header:hydrolase
Chain: C: PDB Molecule:amyp;
PDBTitle: crystal structure of amyp in complex with maltose
115c3o1hB_
not modelled 53.9 11
PDB header:signaling protein
Chain: B: PDB Molecule:periplasmic protein tort;
PDBTitle: crystal structure of the tors sensor domain - tort complex in the2 presence of tmao
116c4o5aA_
not modelled 53.1 12
PDB header:transcription regulator
Chain: A: PDB Molecule:laci family transcription regulator;
PDBTitle: the crystal structure of a laci family transcriptional regulator from2 bifidobacterium animalis subsp. lactis dsm 10140
117c5braA_
not modelled 53.0 13
PDB header:solute-binding protein
Chain: A: PDB Molecule:putative periplasmic binding protein with substrate ribose;
PDBTitle: crystal structure of a putative periplasmic solute binding protein2 (ipr025997) from ochrobactrum anthropi atcc49188 (oant_2843, target3 efi-511085)
118c3g68A_
not modelled 52.6 6
PDB header:isomerase
Chain: A: PDB Molecule:putative phosphosugar isomerase;
PDBTitle: crystal structure of a putative phosphosugar isomerase (cd3275) from2 clostridium difficile 630 at 1.80 a resolution
119c2xecD_
not modelled 52.5 16
PDB header:isomerase
Chain: D: PDB Molecule:putative maleate isomerase;
PDBTitle: nocardia farcinica maleate cis-trans isomerase bound to2 tris
120c5oqj6_
not modelled 52.1 10
PDB header:transcription
Chain: 6: PDB Molecule:suppressor of stem-loop protein 1;
PDBTitle: structure of yeast transcription pre-initiation complex with tfiih

Binding site prediction 

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